Array 1 77788-79348 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134263.1 Staphylococcus delphini strain NCTC12225 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 77788 36 100.0 37 .................................... CTTCTTCACTTTCTAAAGATGTAATTCTGACATTATC 77861 36 100.0 35 .................................... TGTGCATTGTTTAAATCAGTTATTTCTTGTACTCC 77932 36 100.0 39 .................................... TATTTTGTTCCTGCAAAAAGTGTTTCAAATAATAGCTCA 78007 36 100.0 38 .................................... GCTTCATTCTCGAATTAATACGTTGCCAGTTCATGTTT 78081 36 100.0 36 .................................... CTCTAATGTGGTCAAATAAGATTAATACTTTCATTT 78153 36 100.0 36 .................................... CACATCTTCTAATTTATTTGATTTTGCATTTCCAAT 78225 36 100.0 37 .................................... ACCATAATGTTTTGATTACCGTTCGCAATCGAATTGT 78298 36 100.0 37 .................................... ATTTTTATCTAGTGGTTATAAGTTGGTATTAGGTAAG 78371 36 100.0 36 .................................... TATCAATTCCTTTTCATTTGTTTTATTTGTTATCTT 78443 36 100.0 35 .................................... CCTGTTTCGTTCGCAATAATTTTGAGGTCACGACT 78514 36 100.0 36 .................................... TCATCAAAGTAATTAGCTAGCTCGGTGATAACTTCC 78586 36 100.0 37 .................................... ATCATTTTCATCAATTCCTTTTCTTTATTATAGTTTA 78659 36 100.0 37 .................................... ACGCAATTCGTCCATCACTTCTTCCGCCTGTGATTTT 78732 36 100.0 37 .................................... AATATTTAAATCCATGAAATGTACTACATAACGTGGG 78805 36 100.0 37 .................................... CTCGGTACTTTTTCAACCTAAAATGAATGCTGACGTT 78878 36 97.2 36 ............G....................... GATAATCCCGTTTTAATTTATCCTCGATATAATCGG A [78889] 78951 36 94.4 36 ............G........A.............. TGAAAACCTTTTATAACATCTGTCATTTCTTCCAAA A [78962] 79024 36 97.2 35 .....................A.............. ATTTATTACCGTCAATTTCTATTGCATATTTTTCT 79095 36 94.4 35 ..............T......A.............. GAGTGGCTTGATGAATTAGATGCATACCATTTTCA 79166 36 91.7 37 ............G.........A.........A... TTTTTCTTAATCTTCATCATCGTTCCTCCTTGTTTTT 79239 36 94.4 37 ......................A.........A... TTTCAGCATCATGAGAATATTCTTTTTCACTCGAATC 79312 36 69.4 0 .....T..T..A....G..T..A.....G.TTAT.. | T [79333] ========== ====== ====== ====== ==================================== ======================================= ================== 22 36 97.2 37 AATCGAATAGATACCCCGACATTAGGGGACGAGAAC # Left flank : ATATGAATGAAGTCGGATGTGTCGCGTACAGTAAAAAGATGGGAGTATGGTAGCTTTGGCAATTGAATAGGCTGCGGAAATATGTTAACTGTAAAAATACATTGCACATTCCGATGAGCTTTTTGAGTACGAAGAAGTTAAGAATAAAAAAATTGAAGTGTGCACAGCTACAGCATATTCGACCAGAAGTTAAAGATTAAAGAGAAGGTGGCAGTATACAAAGGAAAAGTGGGAAATATACGATAATTACCATGAACAAGAATTGGCTTAAATGAAAACGTTCAAAAAGTGTAGAAGAGGATAATCTTGTGGATACGGTATGAATTGGGAAAAATTTATTGTATAATATCGATGATGTGTTTTGAAAATTTTTTAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATTAGGATATTTTTAATGTTAAAGTTGTCTTAATTTCAGACGCGGTTAAATGATAGATATTCACGCTATTAAGGGATTTCTATAGCTGACT # Right flank : CCATTTATAGTATTTATAAAGTGCTTTTAAGGAGAGGTTACGATATATGGAGCGTTGAAAAATGACATAACAACATAGAAAGATGAATGCAACGTTTTAAAAATTACAAATAATTCACAATTCTATTGTTGGAAACAAAGAAATGTTGTAAAATTTAATTAACATTTTAAGCGATAAAATGGAGTCTTATACATCTTGATGAATTTTTGTATTTATTGCATATTTTTTAGTCATAGCCATTTAAAGTATATGCATTAGTGGTTTTGATTGGAATTTTGAAGAAATAATAAGCAGATTAAAGGTGTTGAGATTGGATATACTACTATATTGATATAATGACTCACTGAATCGTATTCTTGCTTTTATCTAGGGGGTGTAAAGATGAAGGATATCATTTATGTTGAGAATCATCATTTTGTCAGTGTAAAAGGGGAAAGTATCAAGTTTAAAAATATTATAGATAAAACAGAGCGATATTTTTTATTAGATGATGTCGAAGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGAATAGATACCCCGACATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 758884-760100 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134263.1 Staphylococcus delphini strain NCTC12225 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 758884 36 100.0 29 .................................... CGTATGGCAGAAGAGATGGAAGGCGGTAT 758949 36 100.0 29 .................................... CCAAATTTGCCCCCTGAAATTGAGGTTAC 759014 36 100.0 30 .................................... TTCATGTGTTAGATTTTGTGGTTGAGGGCA 759080 36 100.0 29 .................................... ACGTTTATTATCTGAACGCCGTTTTTGCT 759145 36 100.0 29 .................................... TGCCATTTTGTCTGTCGCGCATAACCGCA 759210 36 100.0 30 .................................... ACCTTGGAAGTATCAACTTTAAGAACACCA 759276 36 100.0 30 .................................... AATATACAGATGAAAAGTATAATGAAGCGA 759342 36 100.0 30 .................................... CATGACTGTACTAGAAATGAAAGAGTTTTT 759408 36 100.0 29 .................................... GCAGTTGGAGCTTTAATGATTGCTGAGCC 759473 36 100.0 30 .................................... TGTTTTTCTATACTCAGCATTGAGCACAGT 759539 36 100.0 29 .................................... TTATTTTTGGAGATAATCCATTAATGCGC 759604 36 100.0 30 .................................... TGCAAAATGGTTACAAGGTTTGATGTGGGG 759670 36 100.0 30 .................................... GAAAAGTTGGCAAACGACTTAATAAAATCA 759736 36 100.0 30 .................................... TAACGCTTTGAAATATAAGAGAAACACAAA 759802 36 100.0 30 .................................... ATATCATACTGCTTAGCTTCTCACGCGTGC 759868 36 100.0 29 .................................... CCTAACATCAAACACATTACCTTTAACAA 759933 36 100.0 29 .................................... CATTAAGATGGATAATATTCTTTCTATTC 759998 36 94.4 30 AG.................................. AAGTAAGTTCGAATTCGCAACGAGTAATGC 760064 36 86.1 0 .......................TG..T.TA..... | C [760096] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.0 30 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : ATTATTTCCGGAGTCTCACTTGGGTATTCGCGATATTAAAGTATTTATGCAACTATTAAAGAAGTATCATTTCACAACAATTGTTTTCACCAATCATCCTTCTATCATCATTAATGAAGAAAACATATTTCTTTGTAAAATTAATAAAGAGTGTCATGACATTGAAAAAATAAAAGAAGAACTATCGTTATTTATTCCAGAAGAGATGGTGAGACATCAATTGACTAACATGATTGCTTATCACGAGTTTTTAGGTGAAAATCTTTCTGAGTTTGAACGTTATTTTAAGTTTATAAATCATTACAATTAAGTTATACTAAACACAATATAAATGGTTCGAGGATTGAAATACAAAACGATCAATGAGTAAGTTATAGCTATGTGACTTACTTCGTGATTAAGTTGAATTCCTATATCATTTGAGCATAATGATTTGCTTCTTTTATGTGTGCTAAGCCTCAATTTGATACAGAATCGAGTTGAGATTTTTGGAATTTGAG # Right flank : CCTATTAAAAATCAAATATGAACTACATTTACGTCTCTCACTATGCTTTTACCTCAAATTAAAGTTATAGTGGGGGCTTTTTTTATTTTTTTGAAATTACCCCCCACCGCTTCCTATTCCTCCTCCATGTTATAATAACTACAAATGCTCATAAAAACAGAAAGAAAGTAGGGGAAATGTATGGAAGCAATTATTGCACGACAACCGTTCCAATTAGGTGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGGTACCAACACCCGGGGCACATGATATTTTAGTCAAGGTCCATGTGACTGGGGTGAATCCGGTTGATACGAAAATGCGTCAAGCGCCATTAAATGTTGATGCGCGTGTACTTGGCTTTGATGCGGCAGGTGTCGTTGAAGCAGTCGGTGATGCGGTTACGGATTTTAAAGCGGGTGACCGTGTGTACTATTCAGGTTCGAACCAACGAGATGGCTCCAATCAGACGTATCAGCTCGTGAATGAAAATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //