Array 1 4264-5298 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKVP01000195.1 Acinetobacter ursingii strain TUM15487 sequence195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 4264 26 100.0 35 .......................... ATCTACAGCAGCACCTAAATCCTTTGTTGCATTGC 4325 26 100.0 34 .......................... ATCACAAAAGCAAAGAATTGATGCGAGATGATGC 4385 26 100.0 34 .......................... TTTTTCCAAAGGAAAGCTGTTGATCCGCAATGGC 4445 26 100.0 34 .......................... TGAGTATTACGAAAGCCTAGAAATGCAAGGAGGC 4505 26 100.0 34 .......................... AATTCCAGCAATCGGAGCAGCCAAACCTTGAAGC 4565 26 100.0 34 .......................... AGTTTGACCGCCATTAAAATATTCATGAATCCGC 4625 26 100.0 34 .......................... ATGTATCTGGCACATGCCGTATCGAATAGTTCGC 4685 26 100.0 34 .......................... TGTGGAGTATCCCTCTGATATTGCAAAATGTTGC 4745 26 100.0 34 .......................... AGAACGTCTCAGTCATTGAAGATCATCAACACGC 4805 26 100.0 34 .......................... TTTTGATTGGCGTGATCTGCCAAATGGTTCTGGC 4865 26 100.0 34 .......................... TTCTGGAATCAGCAAAAGCTTTCCACCTTCAGGC 4925 26 100.0 34 .......................... ACACTGTTCTGGATTTTCTTCACACTTAGAAGGC 4985 26 100.0 22 .......................... AAGAAGAATGGGATGCGGCTGT Deletion [5033] 5033 26 100.0 34 .......................... TGAAAATAGCGATTGGCGTGATACGCCTGACGGT 5093 26 100.0 34 .......................... AAAGTATCGATCGCATTGCTAATTCAGAACGTGT 5153 26 92.3 34 .............A....T....... GCAACGAACAGTTAGAGAGCAAATGCTCACGGGC 5213 26 92.3 34 ..................T......G ATTGGAAATGGACAAGTTTCAAAAGTGGCGCGAT 5273 26 76.9 0 .................AT...TTTT | ========== ====== ====== ====== ========================== =================================== ================== 18 26 97.9 33 TTCCTATCGCATAGATAGCTTAGAAA # Left flank : TAAAAATTCAGCTTTTTCGCTTGGTAAAAGTTTTGCATCCAAAATCTCGGCATCTGCGGCCCATTCTAGAGAAAGCGTTTGTAAAACTAGCGCAGAGCTTTCTGCAAAATAATCTTCGGTTCCCTGACCTAAATGAGCATCGTATTGACGTAATGCAGTCACTCCAAAACGAATAAAATCACGAATTGTTGTTAAGTTTTCTGCGGCTTCCTGTAATTGTTCAGGATTAATGGTCGGTCGCTCCACTCAGGGGTCTCCAAAAGATGATGATGCAAAACGGCTTATGATACCTTGTTTTGTCTTGCTTTTTAATGCCTAAAACGAGTGGATTCAATTTTAAATCAAGTTGACTTATTGCTCTTTTTAAATCAATATTTTTCTTACTCTTTAATAATATAATAAAATCATACGCTTATGATTTAACTTATTTTTAAAGCATAATATCAAATTATTAAACTAACTCATTGTTATTAAATGATTTATTAATAAGAGTTTATAGC # Right flank : CGAGACTCCAAACATTTTGTTTTTAATTGCTGCATCGCTAAAGGATCCATCGGTGCAGTCATCATGGCCCGATAAGCCAAACATTCCTGCGTTTCACCTGTTGCTTGAGATTTGGCATTCAAGCTATGACATCCCATCAGTCCCAAAGAGAAAATACATCCTAGAATAAATTTGATGAACATTGGATTTTCTATAACTTAGTATTTGCCGATATCAACTCAAATTTTAAAACGCAAAACAGCAAATAGAAACCTTTGAATAGACTTGTTTCATAAAGTCCTTTCATTTTGCCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCTATCGCATAGATAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched TTCCTATCGCATAGATAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5506-136 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKVP01000133.1 Acinetobacter ursingii strain TUM15487 sequence133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 5505 30 100.0 30 .............................. TGAGCCTGTGCTTCTGCAAGCTTGAATTTC 5445 30 96.7 30 .............................A AAGCAGAACCTAGTTTTTTTCAGGGTGCAA 5385 30 96.7 30 .............................G ATCAACTGGATTAATCAAAAGATTTTCGAT 5325 30 100.0 30 .............................. GCTGCTCGTGAAAAGTATGAAGCCGAACAA 5265 30 100.0 30 .............................. CCCCCTTGAGCGCTTGCTCTTTCTCTAATG 5205 30 93.3 30 ............................CG CACGAATCAATGTGCCAGATAATCCCGTAA 5145 30 93.3 30 ............................AG ATGATGTAACACCACTCATAGTTGAATACC 5085 30 100.0 30 .............................. GTAAGCATTCGCCAGCTTTATGTCATAATT 5025 30 93.3 30 ............................GA GCTGATCAATATCGTAATCTAAGGCAAGGA 4965 30 96.7 30 ............................G. AACGCCGAAGCAGATGCGCCAGTGAATGGC 4905 30 93.3 30 ............................AG TTAAATCCAGTTGTTAAGCTTTCATTCACG 4845 30 93.3 30 ............................AC TTGGATGGTACGAGGGGGGAGTGTCCCAAG 4785 30 100.0 30 .............................. TATTCGCTAGTTTTTACTTCTTTTTTAGGT 4725 30 93.3 30 ............................AG ACGCGATCAGAAATTCGATGATGTTTTTCC 4665 30 100.0 30 .............................. TCATTGATCAAAAAATCTCGGCATATTGAT 4605 30 93.3 30 ............................AC ATAAGTGGGCATGGAAATCAAAAACAGATT 4545 30 100.0 30 .............................. GAATCCGTTTGCTCTGGCAACAGATTCAGT 4485 30 93.3 30 ............................CG AAAAACCAAAAGCCACACGTGCACACTGAA 4425 30 96.7 30 ............................C. TATGCAGCAGATATTGAGCCACCGCTGAAA 4365 30 96.7 30 ............................A. CACGCCACCCTATCTCTTATTACAACCAAT 4305 30 93.3 30 ............................AG ATTTGGCAGTTGGTGACAATGCTGATCTTG 4245 30 100.0 30 .............................. CAAGAAAGTCATGATTGCCTTGGTTCTCTT 4185 30 96.7 30 ............................A. TGGTTCGTATCAAGTGGCACAACAAAATAT 4125 30 96.7 30 ............................A. TTGATTGAGGGTGGTTATTGGTCTGATCTG 4065 30 96.7 30 .............................C ACGCGGGAATCTTTCAATGCCTGTTTGTTC 4005 30 96.7 30 ............................A. ATAAAAATAAAAAGTCCGAAGATGAAATGA 3945 30 96.7 30 ............................C. CAGCAGGAGGATTATAAGCAGGATTTAAAC 3885 30 96.7 30 ............................G. GATCCTATGGTTTTTAAAGACGGAACAATG 3825 30 96.7 30 ............................G. TGTCATCGCGAGTGATGAATTCGCGGAAAG 3765 30 100.0 30 .............................. TCCAAGACCTAAGTGATATGACTTAACATA 3705 30 100.0 30 .............................. TGAAGTGTATGTGTTGAACATGCTAAGTAA 3645 30 93.3 30 ............................AG TTGCCGATGCAGCGCCACGGTTTCCAGTTG 3585 30 96.7 30 .............................A TTCCATCCACGCTTTGCAGGAATCACATCA 3525 30 96.7 30 .............................C AAGCTCAGTTGAGTAACCATCCCATTCATT 3465 30 96.7 30 .............................G AACCCAAGCTAATCGTTGCGGTAATAGCAT 3405 30 96.7 30 .............................G ATAGTGATTGCCTGGTTGCTCAGTCGGCAG 3345 30 93.3 30 ............................GC AACCACATTAACGCAATCTTTGATGGGTTT 3285 30 96.7 30 ............................A. ACTTCACAAGTAGCGGCTTCAAAGCCTCAA 3225 30 100.0 30 .............................. AAATGGGGCGTTGTCATTTCTGGAGTAATG 3165 30 93.3 30 ............................GC CCAAGAAAGCGATCGTATCAAGATACTTGC 3105 30 93.3 30 ............................AG ACAGAACTGGCACTTCACCAAGCTGTCAAT 3045 30 100.0 30 .............................. ACTACGGCCTTGCACCGCACGTGCACACAA 2985 30 96.7 30 .............................C AACGCTTTTTCAAACGTATTCGCATAGCCA 2925 30 96.7 30 ............................C. GAAAAATGAGAGATTGGAGGCTATACAATC 2865 30 96.7 30 ............................A. GCTGATTTCAAACTGGACGATTGAGCAGCT 2805 30 96.7 30 ............................G. ACCAAAATAAGCTAGGTGTGCTTACAGATG 2745 30 93.3 30 ............................AG AATATTGCGCGTATATAAATGCATTGAGTG 2685 30 100.0 30 .............................. ATAAGTCATTTATAAGGGGGATTAGATTAT 2625 30 96.7 30 .............................A TGAATGGGCATAGTGATGATGGTTTTGAAA 2565 30 96.7 30 .............................C ATAAATATGCAATAGAAATTCATCTTTGAA 2505 30 96.7 30 ............................A. TCAATCACAGCCAAGCTCATCTAATCCAAC 2445 30 93.3 30 ............................AG AAGAATTACTTACAGAACCTTTATTTTTAG 2385 30 93.3 30 ............................AG ATCGGCAACCTGTATTCAGTAAAAGCAGAA 2325 30 96.7 30 .............................C TGGACACGTGTAGAGGTCGAGTACAAAGCT 2265 30 100.0 30 .............................. TCCAAGACCTAAGTGATATGACTTAACATA 2205 30 100.0 30 .............................. TGAAGTGTATGTGTTGAACATGCTAAGTAA 2145 30 93.3 30 ............................AG TTGCCGATGCAGCGCCACGGTTTCCAGTTG 2085 30 96.7 30 .............................A TTCCATCCACGCTTTGCAGGAATCACATCA 2025 30 96.7 30 .............................C AAGCTCAGTTGAGTAACCATCCCATTCATT 1965 30 96.7 30 .............................G AACCCAAGCTAATCGTTGCGGTAATAGCAT 1905 30 96.7 30 .............................G ATAGTGATTGCCTGGTTGCTCAGTCGGCAG 1845 30 93.3 30 ............................GC AACCACATTAACGCAATCTTTGATGGGTTT 1785 30 96.7 30 ............................A. ACTTCACAAGTAGCGGCTTCAAAGCCTCAA 1725 30 100.0 30 .............................. AAATGGGGCGTTGTCATTTCTGGAGTAATG 1665 30 93.3 30 ............................GC CCAAGAAAGCGATCGTATCAAGATACTTGC 1605 30 93.3 30 ............................AG ACAGAACTGGCACTTCACCAAGCTGTCAAT 1545 30 100.0 30 .............................. ACTACGGCCTTGCACCGCACGTGCACACAA 1485 30 96.7 30 .............................C AACGCTTTTTCAAACGTATTCGCATAGCCA 1425 30 96.7 30 ............................C. GAAAAATGAGAGATTGGAGGCTATACAATC 1365 30 96.7 30 ............................A. GCTGATTTCAAACTGGACGATTGAGCAGCT 1305 30 96.7 30 ............................G. ACCAAAATAAGCTAGGTGTGCTTACAGATG 1245 30 93.3 30 ............................AG AATATTGCGCGTATATAAATGCATTGAGTG 1185 30 100.0 30 .............................. ATAAGTCATTTATAAGGGGGATTAGATTAT 1125 30 96.7 30 .............................A TGAATGGGCATAGTGATGATGGTTTTGAAA 1065 30 96.7 30 .............................C GGGGATATTTACCGCCCATAACTTTTCCAT 1005 30 96.7 30 .............................G TTTATGGCAAGCGTTGGTTTATTGATAATG 945 30 93.3 30 ............................AA CTCAAAAAACAACTCTTGAGCTTCCCGACT 885 30 93.3 30 ............................AA CTTTGTGAAATAGGATCTCGATTTCTAAAG 825 30 100.0 30 .............................. TACCTGCCCCGCAAGTTTGTTAACTTGGTA 765 30 93.3 30 ............................AC CTAGTCCAGAGAGATGGAAAGAACGTAGTC 705 30 93.3 30 ............................AG GTTGTTCTGTGGGCAGGAAGTCGCAAGACA 645 30 96.7 30 .............................G TGTGAATGCCGCTCTAGTTGTTCTCAGCAA 585 30 93.3 30 ............................AC ACAGCCAAAGGCATGTAGCTTTTTGTTCTG 525 30 100.0 30 .............................. ATACCGTGCGTATTGGGCCACGGAAAGTAA 465 30 96.7 30 .............................C ACACAGACGATATTGTTAATAACTTTCCAA 405 30 96.7 30 ............................G. TCATTGTTGTTGACGTTTCAATCGGCAGAT 345 30 96.7 30 ............................A. TAACTTGACCTATGCGTTTAAAATTAGCAC 285 30 96.7 30 .............................C ACACAGACGATATTGTTAATAACTTTCCAA 225 30 96.7 30 .............................G ATACAGATCAGCCCGACATTGACGATCAAG 165 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ============================== ================== 90 30 96.5 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TAGAGCAACTGAATCTAACTCATTGGTTAGCAAGGCTGCAAGATTATGTACATATCTTATCTGCTCGTAAAGTTCCTGAGGATAAGATCAACGGCTATGCTACTTATTTTAAAGTTAATCCAAAATTGACGGTTGAGCAGCGTGTTGTTCATCAGGCAGAACGCCGTGGAATTTCAATTGAAGAAGCACAGGAACACTTTAAAGCATTGGATCTGATGGAGACCTTTGAACCTTATATCAATATGAAAAGTCAAACCAATGATATGAACTTCCGTTTGATTATTGGAAAAAAACGTGTTGATGAAGCAAATATTGGAAAATTTGGAAGCTATGGATTAAGTCGTACATCTACAGTACCTGAGTTTTAACCCAATATTTTTTACACTCTTTAACAGCTTAATAAAATCAATAAGTTATAACTTTGCTTTAAAACTTTGGGTATTTTATACTTTTTAGGGATAAAGCACTGTTATAACTTTATTTTTTGCTTTATTCTTACT # Right flank : AGTGAAGTTGAAGGTACTCCCCAATGTCTAGACCAAATAATCACGAAATTAAGATAGAATTGGGTTGATAAAGCACAGTATTAACCGAACTATTGTTTAAATAAACCTGTGCAGGGGTATGGTAATCAAGCGACTG # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4546-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKVP01000209.1 Acinetobacter ursingii strain TUM15487 sequence209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4545 30 96.7 30 ............................A. AGATGAAATTAAAAAGTATTTATGTATTTG 4485 30 96.7 30 ............................A. TGTAGAGTTCAGCATTGTGAATGTTGTTGT 4425 30 96.7 30 ............................G. ATGTCGTTCAGAGTAAAAACACCCTTCGTC 4365 30 96.7 30 ............................G. CTACCGCCTGATCCAGCTTTGCACCCCTGT 4305 30 93.3 30 ............................AC CTGAACTCAGTCAAACGCCGTTATCTACCA 4245 30 96.7 30 ............................A. AATGAACTCCATCGTATGGAAAGCCCTGAT 4185 30 100.0 30 .............................. AATCCCCGCGAAACGACAAATATCTAAACG 4125 30 93.3 31 ............................AG ATTCGCTAGAAGTAAACACAATATACTGGCT 4064 30 93.3 30 ............................AA ATATGACGGGGCATTACTCAGTTCATCTTT 4004 30 93.3 30 ............................AA TAGTAAACAAATGTATTGCTATCAAGAGAA 3944 30 100.0 30 .............................. GTTCTTTTTTTGTTTAACTTCGCAGAAGTG 3884 30 100.0 30 .............................. TACGATCAACAACTGGATCAGCCAATTGAA 3824 30 96.7 30 ............................A. TGATCAATGACCATTGACCATTTTCAGGTT 3764 30 93.3 30 ............................GC ATCTGCTGCGGTTGAGTCGTACAAATCAGC 3704 30 100.0 30 .............................. TGACATACTCACCACGTCTTACAATCAGCA 3644 30 93.3 30 ............................AA ACCAATTCGCGCTGAAATGGATATAGCTTA 3584 30 96.7 30 .............................G AATAGCTCGGTTTAATTCTGGTGTTGAGCC 3524 30 93.3 30 ............................GA AGCGACCAGTGTTGCAGCAATGTATTTAGT 3464 30 100.0 30 .............................. CACTCACTGTCTTATTGAATTTCTGGCGAA 3404 30 100.0 30 .............................. TAAATCAGCCAAATAGTTTTGAATCGTGTT 3344 30 96.7 30 .............................G AGTTTTCATAGGCAGTTGCAGCATCATTCA 3284 30 100.0 30 .............................. TGATGTGGTTGCTTGGTTACTCGGGTGAAA 3224 30 96.7 30 ............................A. AGGCATTGGCTTCTTCGATTGCGTGTTTTA 3164 30 93.3 30 ............................AA ATGTCCCCTGCGGATAGTCACGTAGAAACG 3104 30 96.7 30 ............................A. CAAATCGTTTTTGGCCACATCAAAGATCAA 3044 30 93.3 30 ............................AC TTATCGTACATATTCAAGAAGACAGTAAAG 2984 30 93.3 30 ............................GA TACGTGTGATGGTTTATATCGCGCAGACGA 2924 30 100.0 30 .............................. GTGCGAGTGCGCTGCCTGCTTGGGCTTGAC 2864 30 96.7 30 ............................A. CATAAGGCACACCCGCATGCAAGGCTTGGT 2804 30 93.3 30 ............................AA TTGAACAACAAGTTATCAATATTGTTCGCA 2744 30 96.7 30 .............................A TCAATCAGGTATTGTTAATATAGGATTAAT 2684 30 93.3 30 ............................AA TCTTTTTCTTTTCCGCACTTGCTGCACTTT 2624 30 93.3 30 ............................GA TTCGCATGTAACCAAATCCACTAATGCAAA 2564 30 93.3 30 ............................AA GAACAAAGACTTTTTAGGGGTCTGTGAGGA 2504 30 93.3 31 ............................GA TGTTTTTTAGCGCATCTGCAAAGCTGAATTT 2443 30 93.3 30 ............................AA CCAAAGTTTATTAGTATCATTTTACACCTC 2383 30 93.3 30 ............................AC AAAGACGATCATTCACGTATACAGATAGAC 2323 30 100.0 30 .............................. TGAATGATGTTTCAATCTATGCTTTGTTAC 2263 30 96.7 30 ............................A. ATGGCTAAGTGTACTGGGTGATGTATGAAG 2203 30 93.3 30 ............................GA GAAACATAATTGCGGTTGATCCAGAAAAGC 2143 30 96.7 30 .............................A ATAAGCCAATTGGTGGCTGATATGACTGAG 2083 30 93.3 30 ............................AA TATCAAGCATCAATACGGTAAATACATCAA 2023 30 96.7 30 ............................A. TAGTTGGATCAAGCGGAATTTCACAATACA 1963 30 100.0 30 .............................. CATTTCTTTTAATCGTGCCAAATGTTCATC 1903 30 100.0 30 .............................. TTTATATAAAAACAATTTTTCTGTTGAACA 1843 30 96.7 30 ............................A. ATTTTGTCATCACAAAGACGGCCATCTTTT 1783 30 96.7 30 ............................A. TAAGAAATGGCAATAATGATGCTGCACTGG 1723 30 100.0 30 .............................. ATGTTGAAGGCATTATCGCTGTTGATCAAA 1663 30 96.7 30 ..................T........... TAAATTTTAACACACATACAGAAGCGGTCA 1603 30 93.3 30 ............................AA TAAAGACAAGATCATCTACAGATGATTTAG 1543 30 100.0 30 .............................. TAAATGATGTGTCGATCTATGCCTTACTAC 1483 30 93.3 30 ............................AA GAGATTTGCAACGTGAGGCAGGCAAATCAT 1423 30 100.0 30 .............................. CTGAAACTTCTATCCAAGAAATATTTGTAC 1363 30 96.7 30 .............................G CATTTTCAAAAGATGATTTGCTCAAAACTT 1303 30 93.3 30 ............................AG AACCATTTCCGTTGCCGGAACCATTACTTG 1243 30 96.7 30 ............................A. ATGCTTGGTATGTTCATGGAAGCATTTCCA 1183 30 93.3 31 ............................CG AACGACGCTTAATAGAGCGGGGCACACTACT 1122 30 100.0 30 .............................. TGATAACTAAGGGTTTTTCTTTGGAACTGG 1062 30 96.7 30 ............................G. ACAAGAGACTCGCAGCGTATTTTTTAAAAA 1002 30 93.3 30 ............................AA GAAGATGCAAAACGTCGTTTTATTCGCGAA 942 30 96.7 30 .............................G TAGGAAGTTTGAAATGTGGTTCTGTGCCTA 882 30 100.0 30 .............................. ACCGTATTTAAGGAATAAATCATGCCTGAA 822 30 93.3 30 ............................AG AAGTTTTATGAGACTTGAGGCTAATACTTC 762 30 93.3 30 ............................AA CCAACACTAGTATCGTCATAATCATGATTA 702 30 93.3 30 ............................AG TGAAACCAGCCCACTACGCATTTCTTCACG 642 30 96.7 30 ............................C. AATATTTTTTCTATAATTAAATTTTAAGTT 582 30 93.3 30 ............................AG AATCGTCTAGCAATTGACAATCGGTTGGCG 522 30 96.7 30 ..........T................... GCTTTTTACATATTTGTAAACTAGATTTCT 462 30 93.3 30 ............................AA TTTGAAATAACTGTCGGATCTATTTCTAGT 402 30 93.3 30 ............................AA AGTCATCCCCTGCTGATCAAAAACCAACAG 342 30 96.7 30 .............................A AGAAAAACCCTTAGTTATCAAAAGCTTATA 282 30 93.3 30 ............................AG TCTTCACGATCTATCCCGATCGGTTCAATT 222 30 93.3 30 ............................AG AATCGCTTTTACCCACAGAACGCAGATTAT 162 30 93.3 30 ............................GA TCAACTCAACAGAAACATTATCAGGATGCA 102 30 93.3 32 ............................CA TGACCACAAATTCTTTTTACAACTTTTACTTT 40 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ================================ ================== 76 30 95.9 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GCAT # Right flank : ATCCATTAAAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [16.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 45-2174 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKVP01000300.1 Acinetobacter ursingii strain TUM15487 sequence300, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 45 30 86.7 30 ..........G....A............TA TCCATTAAAAATTAAGCCCCTTATAGGGGC 105 30 93.3 30 ..........G..................A AAAGGAGATTGATAAATAGAACCTTCAATC 165 30 93.3 30 ..........G..................A TGATATTGAAAAATGAATTTTAACTATTGT 225 30 90.0 30 ..........G.................TT TTTTATCTTCAATAACCGCCAAAGCCGTAT 285 30 90.0 30 ..........G.................TT TGGCTTATCGCTGGTCATCAAGAATGATTT 345 30 93.3 30 ..........G.................T. TAGTTGTTGTTGTTGTATTACCATTTGAAT 405 30 90.0 30 ..........G.................TT TTCGCGGTTATTTTTTGCTATCGCAAAGTA 465 30 90.0 30 ..........G.................GT GTACCGATTTTTCGAGTCGGCGACATCGGC 525 30 93.3 30 ..........G..................T GTTTGACTTGCTCATTCATTTTCTATCTCG 585 30 93.3 30 ..........G..................T TCACAGTGCCCGTAGCGTCACCAGAAATTG 645 30 96.7 30 ..........G................... TCATAGAATGGCTTTGTTTTTAATCTATGG 705 30 86.7 29 ..........G...........A.....TT TTTAATAACAACAAGATTACTGTTTGGAC C [731] 765 30 93.3 30 ..........G..................T CTGGAAACCGCCTAACGTGTCTTGGAGATC 825 30 90.0 30 ..........G.................TA ATTGTAGTGATTTTGAATTTTGTGATTAAT 885 30 93.3 30 ..........G..................T AAATATCTATGGCTTCATAACCAATATCAT 945 30 90.0 30 ..........G.................TT TTTAACTAAAAACTTAATCTCTTTCGTTTT 1005 30 90.0 30 ..........G.................GA TCTTCTGATTACTTGACTTGTTGTTGTAAG 1065 30 90.0 30 ..........G.................TT TATCGATTTTGCTGCATCACTTAAATGTTG 1125 30 90.0 30 ..........G.................TA AATGAGTTAAAAAGATGGAAACAATCGGTA 1185 30 100.0 30 .............................. TGGCCTCATAAATGCTTGCGCCAGTAGCGT 1245 30 93.3 30 ............................TT TATGCGGAACGATATGATCGACCACCGTAG 1305 30 100.0 30 .............................. TAATTAACGCTGGGCTAGATAATGTTTCAC 1365 30 96.7 30 .............................A TGGATCTAATTCAGCAAGCTCATCATTGTT 1425 30 100.0 30 .............................. ACGTAAAATATCGTCATGCAGTCGATTTCG 1485 30 96.7 30 .............................T TAAGAGCATCGTCGCATAAGTATGGCGTGC 1545 30 100.0 30 .............................. ATGAAGAAGCAGACAATCAACAAGGTATTT 1605 30 96.7 30 .............................A GTAAAGAAGTTGGAGAAAAATTGGTTGAAC 1665 30 100.0 30 .............................. TTCGCATAGTTGGAGGCTGTAAGGTTGGTG 1725 30 93.3 30 ............................TC AATTAACTCCATGACTGCATAGGCACCAAT 1785 30 93.3 30 ............................TC CAACAGACGCGGAATCAACGACAAGTTTAT 1845 30 96.7 30 ............................T. TTTTGCTCAAATTGTCGAACCATTGCACAC 1905 30 93.3 30 ............................TT GCCTTGTCCACCTTTTGAATAAAGCAGATG 1965 30 100.0 30 .............................. ATAATAATATCCCTGAAGTTGAAGACTATA 2025 30 100.0 30 .............................. GCTCTTTTAAAACGGCTTCTACAATTGAAC 2085 30 96.7 30 .............................C TATAACCAAGTGGTATAGGGAGGAAATGAT 2145 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ============================== ================== 36 30 94.1 30 GTTCATGGCGACATACGCCATTTAGAAAAG # Left flank : CATTTTGAAACATGACCACAAATTCTTTTTACAACTTTTACTTTG # Right flank : ACATGTGCTGTATTGTTA # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCATTTAGAAAAG # Alternate repeat : GTTCATGGCGACATACGCCATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 152-1624 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKVP01000321.1 Acinetobacter ursingii strain TUM15487 sequence321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 152 30 100.0 30 .............................. AAAAATCAGGTATGAGAAAAAAGATAATGT 212 30 96.7 30 .............................A TGCGATACGTAAGTTATGAGGATTGAAAGT 272 30 100.0 31 .............................. TTTATTGCAGTGATTAGCCTGCTTTTTTGAT 333 30 100.0 30 .............................. TTTATTGCAGTGATTAGCCTGCTTTTTTGA 393 30 100.0 30 .............................. TTAAATATTGGGTATCAAGATTAAATGGAA 453 30 96.7 30 ............................G. CAATTTTTGTTCCCTGTTGGTCATACGCTG 513 30 93.3 30 ............................AG AACCTGGCGTCGCAGATAAGAAGTTGATCA 573 30 96.7 30 ............................G. ATACGTTATGACCTTGCATGATCTTTGCAG 633 30 96.7 30 .............................A CTCATTCAGATTTAAGGATGACCGAGAAGC 693 30 96.7 30 ............................A. CCTGCACCATCCAATAATAATTGAACAGCA 753 30 96.7 30 ............................G. AATAAAGCTTAGATTTTTAATACTTTATGG 813 30 96.7 30 ............................A. ACGCATTGATTGTTCCCAACCAAAGATATT 873 30 96.7 30 .............................A ACTCCAATTTAACTGGGGGCAATATGTCAA 933 30 96.7 30 .............................G AGTAATGAACAGAAAATCATAGCCCTTATG 993 30 96.7 30 .............................A ATTTATCGCATAAGCGTTTTATGTTCTGTC 1053 30 96.7 30 .............................C ACGTGTACGGTCACGTGGTTGTAGTTCTGC 1113 30 100.0 31 .............................. AAACTGGGTGGTGCCTGATTTTCATTTAGAT 1174 30 93.3 30 ............................AC AGTGGAAGATGATCAAACACAAGACCAAGC 1234 30 93.3 30 ............................GC CTCAATTACTGCCATGCCTTGCTCATCAAG 1294 30 96.7 31 ............................G. GAAAGGGGGCTTGCCCACTTTCACTTTATTT 1355 30 100.0 30 .............................. TATAAAAACTTTGAAATCTATTGTCTGTTT 1415 30 96.7 30 ............................C. ATGCAGGCACGACAGAGGGGGGCATGAATT 1475 30 96.7 30 ............................G. TCAATGCAAAAGTAGACATGGAAATTGTGA 1535 30 96.7 30 .............................A CTTATGCCTGATCCTGAGAAAAAGGAACAG 1595 30 93.3 0 ............................AG | ========== ====== ====== ====== ============================== =============================== ================== 25 30 96.9 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : AACTTTGCTTTTAAATTCAGCATTATGACGTTTACGAACTTTTGTCATTAGATAGACCTCTTTTCTTAAGGGCTATTCTATCTTATTTGCTACGAATTTTTGGTCTAGTTTTCGGGGAGTATTATAGTTGCTTATGATCCTTCCGATCCATG # Right flank : AATCTCGCATTCTAGAAATAAAAGAATATCGTTCATGGCGGCA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16261-13590 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKVP01000057.1 Acinetobacter ursingii strain TUM15487 sequence057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16260 28 100.0 32 ............................ ATAAGGATTTTTAAATGAATATTGAAGAATAT 16200 28 100.0 32 ............................ AATAACTTAAAGCATCTGGTAATTTCATTGAT 16140 28 100.0 32 ............................ TAATCTCTTGCTCAGTTATCATTCAACCTCCC 16080 28 100.0 32 ............................ TTATATTTTCTCTCGACAATAAAAGGAAATAA 16020 28 100.0 33 ............................ ATACCACTCAAAATCATATCCACCTTTTTCAAT 15959 28 100.0 32 ............................ AGATATTAATCACGAAAGGTCAGGGTTTAGAA 15899 28 100.0 32 ............................ TGTACCAGAACCGTCACCATTGCCATCCCCTG 15839 28 100.0 32 ............................ ACGTTAAGACAAATTCAGGAATTTGTAATCAA 15779 28 100.0 32 ............................ TTTTTCTGAGCAGTTCGTATGCTGCGATCAGG 15719 28 100.0 32 ............................ AAATTATTGCAAGGTCATAATGTTTTTGCAGA 15659 28 100.0 32 ............................ CAGTCTTGTTACCGCCATTAAGTTACACCGAA 15599 28 100.0 32 ............................ AGTGCATCTGCTCATACGTCAGTACAGTTCAA 15539 28 100.0 32 ............................ TAACGCCTATAATAATTATTGGTCACTGTTAG 15479 28 100.0 33 ............................ CAAAAATTTGAGGAGTAGCTACTCATGGCACGT 15418 28 100.0 32 ............................ ATATTGGTCATTAATACGATCGACAATTTCGT 15358 28 100.0 33 ............................ ATTTCACGGCAAATAGGGGCGTAGTTCTTCAAT 15297 28 100.0 32 ............................ AATAGAAGCTGGACAGGTGTTTAATGCTTGCA 15237 28 100.0 32 ............................ AAAAAGAGGCTAATTGTTAGCCTCTTCAGAAA 15177 28 100.0 32 ............................ ATTTAGCATCCCTAATGGCAGGGCAATATATT 15117 28 100.0 32 ............................ AATCGTCACGAAATAATACAATCTGATATTTT 15057 28 96.4 32 .......A.................... ACATCATCCAGTGTAGCCAGTTGTTTCTCGTA 14997 28 100.0 32 ............................ ATACTCAGGTGCTTGGCAGAAAAACGATGAAT 14937 28 100.0 32 ............................ ACTAATGCGACGAAATATAACGTTACGCCATA 14877 28 100.0 32 ............................ ATGCGCGACTACACCATTGCCGCGTTCTCTGT 14817 28 100.0 32 ............................ AGTCGAAAAAATCAGAAACTTTTTCAAAAAAA 14757 28 100.0 32 ............................ TAGACCCTAGCCCCTACGGGGGCTAACTTATT 14697 28 100.0 32 ............................ TTTTTATCAGCTTCAGAGATCACGTAGTAAGA 14637 28 100.0 32 ............................ AATAATTCGTGGTGTAACTCCTAGAGAGGCTT 14577 28 100.0 32 ............................ ATGAAAGTGGCATCTTTGTTGTGTACTAAGTA 14517 28 100.0 32 ............................ ACTTCTAAGTACAACTAAAACACCGTAATTAT 14457 28 100.0 32 ............................ TTTATTGTGCGTTTAGATGTGCTGTCATAGAT 14397 28 100.0 32 ............................ TAACACGATTCATTACATGGAGCGTAACCACA 14337 28 100.0 32 ............................ TTTCAAGCTTCGCTTATGGGCATTCCGAGTGA 14277 28 100.0 32 ............................ ATTCTCAACGTCCTCGGCGTATTCGTTTTCGT 14217 28 96.4 32 ..........G................. GAACACGCTGAAAAGCCATGGATCCGCGACAT 14157 28 96.4 32 ..........G................. TGACGATTCTCTTTTTGCTGCTCATTTTGAAT 14097 28 96.4 32 ..........G................. TATACCAACATTTTGAAGATCAACATATTCAG 14037 28 96.4 32 ..........G................. GAAAGCAATGGATAGAATAATTCGTAATTCGT 13977 28 96.4 32 ..........G................. ATTTGGCAATGTTACAGATGAGTTCTGCAAAA 13917 28 96.4 32 ..........G................. AACATACCCAAAAAGTCTTTGATCTTATTGAT 13857 28 96.4 32 ..........G................. AGCAAGCAATAGTGAGCCAACCTTATCTGTTA 13797 28 96.4 32 ..........G................. TATCCCCAAACGAAAGCAAATTCATGCGTATG 13737 28 96.4 32 ..........G................. TTTAAGCTGCTGAATCGCCCACATCTTATTGC 13677 28 96.4 32 ..................T......... GATCCAGAAGGGGTACAACCGATTAAGCCTTT 13617 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.1 32 GTTCATGGCGACATACGCCATTTAGAAA # Left flank : TATTGTTAAATTGCTAAGA # Right flank : TGCAAACGATGTGTAAAAGTTTAAGCGGATTGATTCACGAGACTAGAGTATGGAATCTAGCCGATCATAAAAATGAGTTAAAAAGGAATGATATAAACAAAAACGCACTGCTTCTGGCGAAACAGTGCGTTAAGTTAATAAGATTATGCTGGTAAATCGAACCAGATCATTTCACTATCTTCAAGTGCATGAATCGTAGTTTTCTCATCAAACAATAAAGCATCACCTGCTTTAACAATTTGATTCTCAATCATAATTTGACCTTTAATCACATGCACATAATTGTGCTTTTGAGTTGCAGCAATCTCAAGTGTTTTACCAGCTTCTAACACAGCCGCTTTCACTTCTGCATTTTGGCGAATATGCATAGCAGCATTATCATTTGGTCCTGCAATCAAGTGCCATTGGTTTGGCTGTTCACTCGGATCAAGTTTGATTTGTTGATACGTTGGTTCAGCATCGCGTACATTTGGATGAATCCAGATTTGAAATAGATGCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCATGGCGACATACGCCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //