Array 1 118931-119508 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPOE01000008.1 Salmonella enterica strain CFSAN064278 CFSAN064278_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================== ================== 118931 32 81.2 31 ..G....A.....G..C........G.....A CTGTGGGTTAGCATCAACCGACAGCGTCTGT 118994 31 87.5 31 ......T..................-.AC... TTGTGGATTGCGCTCGAGCGTCAGCAACTCC C [119021] 119057 32 96.9 28 ...............A................ TTGATTATCTGATACCGACAGCACCTGT 119117 32 100.0 28 ................................ TTGGTTACCTGCTACCAACAGCCTCCGT 119177 32 100.0 28 ................................ TTGGTTACCTGCTACCGACAGCATCTGT 119237 32 100.0 28 ................................ TTGGTTACCTGCTACCGACAGCGTCTGT 119297 32 96.9 28 .......................A........ TTGGTTACCTGATACCGTCAGCACCACC 119357 32 96.9 28 ..............T................. TTGGTTATCTTCGACAGTAAGCACCTCC 119417 32 96.9 28 .......A........................ TTGGTTATCTTCGACAGTAAGCACCTCC 119477 32 90.6 0 .......A.....G..T............... | ========== ====== ====== ====== ================================ =============================== ================== 10 32 94.7 29 AGTCCTGCCGGCAACGGCGGCAGGCTGGTCAG # Left flank : TCTGGTGCAGAGCAAGTGTGACCCGATCCTGGCAGCTTGCTGTTGCCTCTGTTGCCATGGCAAAGGTTTTTGCTCTCAGCGCCTCATCTTCAGCCAGTTGTACCAGCCAGGACGATATCTGTGCCTTAAACCCCGCGTCCTTCATGAAGTTTTCCGTCTCACTCAGTCTGTCCAGGAAGAGGCTGAAGGCAGCAGCGTTATCTTCCTGTCCGAACATATGCCATCTGTCTGCAGGAGCCGGTTCGCCCTCCCGGGCAGGCACCAGCCAGCCAGCGGCCGCCAGGTGCAGTGCCCGGGCTTCCCGGGGGGCTGAGGCTCCCGCCATATCGAATAGTATCCTGGGGCCTGAATAGCCTGGCGCGCTGGTGATCTCCCGCAGCGCCTGCAGAGTGCGTTCAGACAGAGGATTGCCTTCCAGATTTACGCTTGCCTCTGAAGACAGACCCGTGATGCTTTCCGGCAGGCGGGTCAGTTGGTTATTGCGGGCATACAACCGTTGT # Right flank : GATAATTATTATGAGGAATAACCAATGTTGTTATATGCGCTGGTAAACGGTCTGGTAAGGCGGTAAGGCCTGACTCTCCCACATTAAGCTCTCGACTGCCGTTATTCAGGCAGGTACATATTCTCTGTACCGTCGCAGCACGACCGCGTAACTCTTCTGCTGGCGCAGCCCCCTTCCATTCTGACCAGACAGCATCATACTCTGCTGGTGTCTGTGGAGCCGCCGGAGCCGGAAGGGGGGATACCTGGAGTGTCCCGGATGCCCCTTCCGCATGTTCTGTACATTCCTCTCCCTGTTCTATGTCCATGGTGAAGCGATATGTTTCATTGTGCCCCTGGCAATTCACGGAATAGTTCCCGGCGTCATCAAGGGTGACCGACAATATCTCCTGGTTGTCTGCATCCAGGATACAGAAGTGGCTTTCCCCGTGGCGGCCGGAGTGAATGCTTTCCTCGTATCCGGCATACGCGAGCATCCTGAGCTGTTCAAATCTGCTGACC # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCCTGCCGGCAACGGCGGCAGGCTGGTCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 216599-214128 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPOE01000001.1 Salmonella enterica strain CFSAN064278 CFSAN064278_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216598 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 216537 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 216476 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 216415 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 216354 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 216293 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 216232 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 216171 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 216110 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 216049 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 215988 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 215927 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 215866 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 215805 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 215744 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 215683 29 96.6 32 ...G......................... GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 215622 29 96.6 32 ....G........................ CATGGTCTGTACCGCCTGCATTTCTGCATTGT 215561 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 215500 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 215439 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 215378 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 215317 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 215256 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 215195 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 215134 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 215073 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 215012 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 214950 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 214889 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 214828 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATATC 214767 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 214706 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 214645 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 214584 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 214523 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 214462 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 214401 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 214340 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 214279 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 214218 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 214157 29 100.0 0 ............................. | A [214130] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGATTTGTGTTTCTGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTCCCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCACCGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236081-233144 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPOE01000001.1 Salmonella enterica strain CFSAN064278 CFSAN064278_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 236080 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 236019 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 235958 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 235897 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 235836 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 235775 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 235714 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 235653 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 235592 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 235531 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 235470 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 235409 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 235348 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 235287 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 235226 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 235165 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 235104 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 235043 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 234982 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 234921 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 234818 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 234757 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 234696 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 234635 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 234574 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 234513 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 234452 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 234391 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 234330 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 234269 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 234208 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 234147 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 234086 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 234025 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 233964 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 233903 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 233842 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 233781 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 233720 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 233659 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 233598 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 233537 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 233476 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGGGCTGTCATT 233415 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 233354 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 233293 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 233232 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 233171 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 48 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCATCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGGGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //