Array 1 40488-40040 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEU01000019.1 Gilliamella sp. Lep-s21 NODE_19_length_43358_cov_174.198808, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40487 28 100.0 32 ............................ ACACTTCAAAGTCGTCATCAGTCGGTAATGTG 40427 28 100.0 32 ............................ AACGGCATGCCTGTACTTGTCGCTTATCACTT 40367 28 100.0 32 ............................ TCACGCAGGCGGATTTTGCATAACCGTTCCAA 40307 28 100.0 32 ............................ TTTCTCTCGTAAAGTTTTTAATGCACGATAGA 40247 28 100.0 32 ............................ TTTTAGGCTATGCGCGTATGCAATAACCATAC 40187 28 100.0 32 ............................ TGAAAAATTAATAATCACAAAAATAACCAAAA 40127 28 100.0 32 ............................ CTGTTAACGCTTCACCTGCTTTTACTAAAACA 40067 28 96.4 0 ..................A......... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACCGCCGAGTAGGCGGTTTAGAAA # Left flank : TTTAAGTTTGCGATTTTCTGCCTCAAGCTCTTTTAAGCGTTTGATATCTGAGCTTTCCATTCCGCCGTATTTTTCTCGCCATTTATAGAAAGTTGAATTACCCATGCCATATTTACGGCAAAGCTCTTTAACGGCAATACCTGCTTCTGCTTCTTTTAATATCGATACAATTTGGTGTTCAGTCATTTTTTTCATAATTAAATCCCCTTTACTTTTATCATAGAGAATTTTCTACTTTTTTGCTGTACTATTTTAGGGGGGTGGTGTTACATAATATTGATTATCTAAATTGAAAGCTCTCGTTATATAAATAGTTTATAAAGGTGCGCTCAGATTTGATCATTCCTATTTTGAATTCAAAATTCTACAAAACCCTTTTTTTTGCTTGCTTGTTAATATATTGAAAAATATATATTAATTTTAATTCTAGAAAAAAGGGTTATTTTTTGAAAAATAACTAAAATTTATTTAAAACAAAAGGCTATGTCTGATATAATCTA # Right flank : TTAACGCACTCTATTTTGTGCCGCTAATTCATTAATAGCCGCTTCTGCCAAAAAATTACTCCGATCTTTATAAAAAGAGTTCGGTGCTTTAACTGCGTTATCTATTCTATCGATAAGAATATCGGGTAATGTGATATTAATTCTTTTTTGTTTACCAACAAATGATGACAAATCAACATCAATAATGACCCATGTATCGCAATGAGCATACTCATCGTTATTTTTATACGAAACATGATCGTTGTGAATATCTTTGACATCATAATCGCCTGATTCAATCATATCTTGAACAGTTAACAAAATAGCTTCAGTCGCCATTGCTGGGATATCGCTTTCTTTGTCGGCGGCAGAATAACAACTATATTTTTCATTACATAACGCAGGCACGACAATGCCGTAAGCTGTATTGCTATCGTTCGGTGTTTCAATGCCAAGAGTAAAAAACATAATACCTCCAAAGGTGGCGGGCTATAAAAGCCCCGCCGATTTTTTGATTGATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGAGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 41164-40236 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEU01000008.1 Gilliamella sp. Lep-s21 NODE_8_length_107362_cov_203.141214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 41163 28 100.0 32 ............................ CATGATTTGGGGCAATGAACCCTTTGTCAACG 41103 28 100.0 32 ............................ AATTGAGACCTGACTCCGATGCTCCAATTTGA 41043 28 96.4 32 .......A.................... ATGTCATTACCGAAATTACGTAAGTATTCGAT 40983 28 100.0 32 ............................ ATTTTACCGCCATTAAATATTATTGAAAGGGT 40923 28 100.0 32 ............................ AATGTATCCATCGATACCGCCACTTTGATTTA 40863 28 100.0 32 ............................ ATGGGAGTCTCACCCTCGTCGAATGTTACGAC 40803 28 100.0 32 ............................ TGAATGTCAAGGTGTTTATAAAAATTTTATTT 40743 28 100.0 32 ............................ TGTTGATGCTTGAGTTAGCAAAACTTCAAATC 40683 28 100.0 32 ............................ GATTTGTGATTGTTACATGCTGAACATTGCTT 40623 28 100.0 32 ............................ ACGTTGGCAACCGTATGCACAAAGTTATATTG 40563 28 100.0 32 ............................ ATCGCGCACCGTTGTACATTCTTGCTTCAGAG 40503 28 96.4 32 .........T.................. GTGCTGTGAGTTGATGCTAGGTAATTGTGATA 40443 28 100.0 32 ............................ TGCAGAGTGTTTTGCAACCCATTCATTTGTAT 40383 28 100.0 32 ............................ TACCCAATGACGATAACACCAAGCTCGTGTAA 40323 28 100.0 32 ............................ TGTTGATAGGGCACCATAACCAACACCGCCTA 40263 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 CTTCAATGCCGTGTAGGCAGTTTAGAAA # Left flank : AAAGCAGATATACAGCAAAAATCATCGATTAGTGATTATGCTTTATTGATGCCTATCACTGTAGTACCGACGACGATAAAAGGCTATTTACGTTTTAGCCGTGTCAATCCTAAAGGTCAGAGTGCGTTAAGGCGTGCCGAAAAAAGATTAACAGCACAAGGTAAATGGACACCTGAAGTGAAAAATAAAATGATTGAAAAGTGGGGAAGTGTTCATTTGCAATACCCACATCTTCATTTGAATAGTAAAAGTACAGGGCAAAAATTTATTTTGTGGATAAAGCAAGAAAAATGCCTAGAGCCAGTGCAAGGCACATTTAATAGCTATGGATTAAGCCAAACAGCCACTGTTCCTGATTTTTAAATTTCTAACCCTTTTTTTGGGGATGATTTTAACATATTGATTATTATTGATATTAAAATAGACTCAAAAAAAGGGTAGAAATTGGGTAAAGTGCAGTATGCTCTTTTACAATAAGGCTCTATTGAGATAAAATTCTA # Right flank : TTGTTCAGATTTAAATAGCATCATTGTTGTAACTTCAATAATCATTAAGTCCCACAATATAACCCTTTCAATGTGGTTTAACCGTATTATAAAAGTGAATAAATCGCTTAAACTTTTGTTTTCTTTTTTTGAATATTTGTTGATTATGCTAGATTTCAATTAAAGTCTGTATCGCTTTTTTTGGCTTTTTTAATCTTGAAACGGTATAGAATCCTGAATATTTTTTACAAAAATATAACCTAAAAAGTAAACAGTTCAACTTTAGCTAAATCAGTGATGGTTAGCTTTGTTTATGATATCAGCGCCATATCTCTTGTATGTGATATGGCGTTAGTTTGCTTTTTTATGGATATTTATTATCGTAGTGTCTTAAATTACTGTAAAAAAGAAATAATTACTACACATTATTAGTATAATAAGATCACTATTCAGCCCCAATTTGCGTACTCACTTTTATCTCTCTGTTATCGGTAATTTCTAAATTCGATAGCACCGCTAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26793-28441 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEU01000020.1 Gilliamella sp. Lep-s21 NODE_20_length_42742_cov_155.802096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26793 28 100.0 32 ............................ CAGCTAACATATTAACGGTTGGTATTGGCTCT 26853 28 100.0 32 ............................ ACTGTCCTCAAGGTCTCAATCACATGCTCGAC 26913 28 100.0 32 ............................ TAGTACATGTTTTTTATCAGTGATACAGTTGA 26973 28 100.0 32 ............................ TGCATCACTAACACAGCCAAATAACGAGCCTC 27033 28 100.0 32 ............................ ATGATTAACTCACCAGAAACGAGCTTTTCTTT 27093 28 100.0 32 ............................ TATAAGGGGGTGGGAGCACGCTCCCACTTAAA 27153 28 100.0 32 ............................ GACAAACAAAGCAGTTGAGCGGTGGAGCAAAC 27213 28 100.0 32 ............................ TAATTAGTGGCTTTTTTATGTAAATTAATTGT 27273 28 100.0 32 ............................ ATTTCATGCTTGATTTTTGCCGTATTCGCTCC 27333 28 100.0 32 ............................ ATATTTCAAATCAATTGAACTTGCAGCGGGAC 27393 28 100.0 32 ............................ AAGAAAGAGGGGTAATTGATGAGAATAACGTC 27453 28 100.0 32 ............................ GTAATTAAAATAGCTTTCTCAATTGCTTTATT 27513 28 100.0 32 ............................ GCATGTGGGCAACATTAACGGATATATCGAAA 27573 28 100.0 32 ............................ TGATTTCGCACTAAAATTATTTGGAAGAAGAT 27633 28 100.0 32 ............................ TCGCCGGTCCAATAATCAAGACCAATAGGATC 27693 28 100.0 33 ............................ TTACTGGCATTAGAATTGCTATTGCTTCTTGAT 27754 28 100.0 32 ............................ TGAACCGCCGAATACGTCAACTATTGTCCAAC 27814 28 100.0 32 ............................ AATAAAAGACCCAGACAACATTAATTGGACCG 27874 28 100.0 32 ............................ CTCGACATCTTGAGCATTAAAAACATAATACG 27934 28 100.0 32 ............................ ATATAAGGGTAGGCGTTATAAATTGGGTGCTA 27994 28 100.0 32 ............................ ATTTCCGCTTTAATCTGCTTTGCCACCATTTG 28054 28 100.0 32 ............................ GCGGCACGTCGGCGAGTGTTACGCTGTGTATA 28114 28 100.0 32 ............................ CACAGGATGAAAAAAGAGATTTTCTAAATCAT 28174 28 100.0 32 ............................ AAACCATTTTTATTTATTTTTTTAATATTACT 28234 28 100.0 32 ............................ TATCAACAACGTGCCCACCAGCAACACGTTGC 28294 28 100.0 32 ............................ AGTCTGATTATAAAAAAGCAGTACAAAATAAT 28354 28 100.0 32 ............................ GCAACAAATAGCTCATTTAATTCTACGCTATT 28414 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : AACAAAGAACCAAGTACATACTGTTTAAAATCCCAACCATCGACCGCACCACGGACTTCGTCGGCAATTTTCCATATTTGGCGTTGTAGTTGATCGCGTTGTTGCGTTTCGGTAATTGATTTAGCGTTATTAGATGTCATATTTTTCAAAATTCCTAAATAAAAATAGGTGCTGCCTAATTAGAAGGTAACTAATTTTTACTTCCATATTAGCCATTTTATAGCTACCTGTTATAGGTGTTATAGCATAGCTGATTTGTTGTTATTTTTCCATCTGGGGCGTTTATTAAAAACTCAGCCAATGGGTATTTTAAATTTTAAACTTGGGAAATATTAAGAAATAACAAAGCAACAAAATCTAAAAACAAAAACCCTTTTTTTAGCTGTATTTTAAAAGTTAATAAAATCAATAGATTAAATTTATCTCTAAAAAAAGGGTTTTTAAAAACTAAATACCTATTTGCCTTTTTACATACTATATTGATAGTATATTAGCTTCTA # Right flank : AAAAGGAAATCGTAGATCGATCCTTGTTAAAATATTAGACAGTATCTACCTATAACAGATAAGTGCCCTATCGGGCGTTAATTTTGTTTTTTATGTTTATTACTGCAATTTTTTAAATTACTGTAAAAAATGCGAGGGATTTCTATAGGTTTTAAATCCTGTTGTTATTATTTTAAAAAATGTTTTTATGTTATGAATTTCCATAATCAACGAGCTTTCCTGTTTTTTCATCACGCACACACCATTGCAAACGGTGATCCTCGCCAAAATATTAGACAGTGCCCACCTCTATCATTTTTTCGTTTTGGTAATATTGTTGTTCATATTGCTGCGGTGATACCTAGCCATTGGCTGAATGACGGCGTATCCGATTATAATAGATTTCAATATATTCAAATAGTGCTTTATTAGCCTGCTTCCTCGTTTTGTAGTAACAGTCATGAATAATATGTGTTTTGAGTGTATGAAAAAAACTCTCAACAACCGCATTATCAAAGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15427-15814 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTEU01000007.1 Gilliamella sp. Lep-s21 NODE_7_length_142011_cov_175.606809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15427 28 100.0 32 ............................ AAATGACGCCTGTTATTGGTTGGTTACTGATT 15487 28 100.0 32 ............................ ATTGATTGCCATTTGCTCGTGATTTCCACGAA 15547 28 100.0 32 ............................ AATGCACGACATCGAGGATTGGTCTGAAAAAA 15607 28 100.0 32 ............................ AACATCAACAAAAAATAAACCAAGTTCGTTCA 15667 28 100.0 32 ............................ TGCGAGCAAAACCGCCTTTTTAGTACCATAAA 15727 28 100.0 32 ............................ GACAGCGTCATAGATGAATTTGACACCAATAT 15787 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTTACCGCCGCATAGGCGGTTTAGAAA # Left flank : TTATTATTTAATGGTGGTTGCATTAGTTGGATTAGTGACAGGTTTAAAAATGAAAGAAACCGCCAATAAACCGCTTCGAGGCGCAACACCTGCCGCATCGGATCGCTCAGAAGCCAAAGAGATTTTATCGGATCACTTTGATTCAATAGAGCAAAAAGTGGAAGATATCCAACAACAGATCGATACCTTACAAAAACAGCGTCAAGATTTGGTCGATCAGCATCCTAAATTAGATTGATCTTTTATTTTTGGGTTTTGTATGTTTTGTTTTAAAACATACAAAACTAAAGTTTAATAAAATCAATACGCTACCTGAGTGTTCTTTAACGGTAAAATTAGCACATCATAAAAATAACCAAAACGCTGCCAACCCTTTTTTTTATTGATAAATTAAAACAAATAAAAACAAAGCATTATAGAATAGCTACAAAAAAGGGTTTTTGAAAACAGAAATCCTATTTGCCTTTTGCTAAACAAGGTTTATAGTATATCGGCTTCTA # Right flank : ATTCAGGCATCATTATTTAACAGTATAACGTTCATTTCTGTATAACTGCTTATTGAGTCTTAACTCGCTAAACAAGGACGATGAATATGTGTAATTGTGGCACAATGTAAAAAACAAAAGAGTTTGACAGTTAACTGTGAAAAAATTATTTGCACATTAACTTACTATGATATTGTCGACGATACTGTGTTGGTGTTCGCTCTGTCTTTTTTTTAAAAATCCGACAAAAATAATTACTATCTTTAAACCCCGATGCTAGAGCAATTTCTTTTATATTTAGATCATAATCCTTTAATAGCGATTTTGCATATTCTAAGCGAATATGATTTAGATATTCATTTAGCCCTATTTTTCCCTCGCTTTGAAATAGATGTGATAAGTAATTGGGTGAAATGTAAAACATATTATGATGCGGCGTGTGATAATTATTGTTTAAATTAATTGATAATTAACCACGCCGTTGATTTCTATATTTGAAAGTGAATTACAACTTTACGGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGCATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //