Array 1 1-318 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZMV01000117.1 Micromonospora wenchangensis strain CCTCC AA 2012002 contig117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1 22 56.8 36 ---------------..................G... GCCCGGTACATCGCCGCGTCCGCCCGCAGCAGGGTG 59 37 100.0 38 ..................................... AGTCACGGGGCGGGGCTTTGCGTAGACACGATTGCGGC 134 37 83.8 38 ....T...T..A.....A.T.............C... GGATTGACGCTCGCTGTGGTTGCTGTCGACTGGGAGAT 209 37 83.8 36 ..............T....T............ACG.A TGGATGTGGGTGCCGGTGCCCATCCGGCCGGTCGAG 282 37 81.1 0 T...........TC.A.A.T.............C... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 81.1 37 GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGAAAC # Left flank : | # Right flank : CGTGAGGATGGTCGTCGGGTTGAGGTGAACTCCATCCAGGGCAGCGCTCGGCGGTCGCGCCGGCGAGGATGGGCACAAGACCCGGCGGTACGAGAGCGACGGGCAGACCCGGTTGCGCCCGGCCGATGTGCCGGGCGAGGATTGAGTGTTCGCCGCCCCGACCGTTACAGGCTGCGTCTATTGCTTTGTTTCGTTGGACTGGCCCCGCTTGAATAGCGGGCGTCGTAATGATTTCCGTGGGGGGCTGATCGTGTCTGGTAAGGGCATTCTTTGGGCGCATAGTCCGGCTGAAAGCTCTGGCCGGTGGCATTCTCTGGCAGAGCATCTTCGTGGCACGGCAGGGTTGGCGCGACGCTTTGCTGCTCCGTTTGGTGGTGGTGAGGTGGCCTATTGGCTTGGTGCGTTGCATGATGTGGGCAAGGCGTCTTGTTCCTGGCAGGACAAACTTTCTTCGGTTGCGTCCACTGGTGGGGTAGTGGGCATCGACCACAAGTCTCTGG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.05, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCTCCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3-272 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZMV01000030.1 Micromonospora wenchangensis strain CCTCC AA 2012002 contig030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 ............................ CGCCTGCACCAGCAGACCATGACCGAGCGTCGT 64 28 100.0 33 ............................ GATGGCGATGCAGCTCGCCGACTACAGCCGGGG 125 26 92.9 32 ..............--............ GGTTCTGTCCGCTGATGAAGGCCGGAGGCGTT 183 28 100.0 33 ............................ CACCGGTGATGCGTACGTGCGGGACGGCGAACA 244 28 92.9 0 ...............C.A.......... | T [269] ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.2 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TGC # Right flank : CACCTCGGACAGCAGCGCCGGCCGCAGGTGGTCCTGTTCCCCGCCCTCCGCCAGAACTACCGGATATGTCGGCAGGTACTGACGACGGTTCCGACAAAGTTCTGACAAGGTATCCAACTATCGAGCCGCACCAAGCCGGACAATGACACGACGGTGTCGGCCGGTCGTCAGTCGCACGTTGACGACGTCGCTCAGGGCGAGGCTGGTCGTAGGCGGCAAGTACCGTCTCTGCACGCATCGCCGCTTGCAAGACGATCGGGGGTCAACAGCGATGGTTGTCAGCGATGAGATCAGGGCAGCTCAACGCGTACTCGGTCATCAACTCGCTCAGATGCGTAAGGCTGCCGGTCACACTCAGCATGATTTTGCGCGGCTCGTGCGGTATGGGCGCAGCTCCGTAGCCAACACTGAGACCGGCCACCAACGCCCCGACCGTACGTTCTGGACGCGCTGCGACGAAATCCTGCAAACCGGGGGCGTGCTCGCCACGGAGTACGACA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 31636-31846 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZMV01000070.1 Micromonospora wenchangensis strain CCTCC AA 2012002 contig070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31636 28 96.4 33 ...T........................ GTCGGTCCAGTCGATGCGGCTCGCATTGGCGTA 31697 28 96.4 32 ................G........... GCTGGCGAACAAGGCGTATGACGCGCACATCG G [31712] 31758 28 100.0 33 ............................ GGCCCGGAAGATGCTGCGCGATCTGTCCTTGCC 31819 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCTGTCCGCAGCCCCCGTGCGGCATGATCGTCTCGATCTGCTCATCGAAACGACGTCCCGCCTCCTCGGCGTCGGCCAACTCAAAGGCATGGCCGTGGTAGTCGCGCAGCAGCAGCGTCAACGGGTGATCCTCTCTCCGGTGCCGGTATAGACACGGTGCCACCACGTGGTTCCGCCGTCGCGGGTGAGAAGCTGTCCACCGCCTCGCCCGATGCGCGCTGGCCACGACAGCCATGACCGACAGGACCTGTCCCCACTCCGGCACGAATGCCACTGGACCGCCGGTCAAGCGCCACGAAACAACGGCTGACGCAAGGGCCAGCCGGCCTGGAACCCGACTGGCCCATGAAACGCCGAAGCCGGGTCCGCATTGACTACCATCCGCTGTACGTCAACCGTCGGCCTCAACCACCGGAAGCAGGACCGACCCCACGAACGAGCCGCCAGCCAAAGTGAACAAAAACAGCACAGTTGATCTTTAGCGCCCCAGGTCAAGAAGT # Right flank : CCTGGAGCGGTGGGCCGCACGCACCGCCGCAGCCCGAGAGCTGAGCCGCCCCACCGCTTGATCGCTACGCGGTCACATCTGAGGCGAATCCCGCGACTTCGTCGACCGAGGTCCGGCTGCCTTCAACCTGCGGCCTGGCCGCCAAACTCCACTGTCCCCGGGAGCAGCCCGCACCACCATGGGTTCTGCATGTGTGGGTGACACGTAGACGGGGGCGCTCGCCCAGTGGCTGCGGGCACTGTAGCGTCGCCACGGTCTCAGTTTGATCGACGGTGTCGGCGGTGGCTGGGGCCGCCCATTGTCTGCCTTTGTGTCTGGAGGTTCGATGCCGCTCACCGATGGGCCACGACTTGTCATCGAGGATCTCACGTCGCGGGTGTCGCCGCTCGATGCGCGTGAACGACAGGACCAAGCCGAAATCCTGCGGTGGATACGGTCTGGTTCTCCGTTGTTTCGTACTGTTCCACCTATGACGCCTCCGCAGCATCTGGCGGTGTATT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 152-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZMV01000071.1 Micromonospora wenchangensis strain CCTCC AA 2012002 contig071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 151 28 100.0 33 ............................ CTGGGTCGCCGAGCGGGCCTGCTCGGCCTGCTG 90 28 100.0 33 ............................ AATCTGGGCCATCGCAGCGTTGCGCTGCTCCTG 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : AACCTGCGGTTCGCCCTCCTCTGAGGCATACACGAAGGAGCCGAGGTGACGACTCATCAATTCGCGGTAGCGCTCATGCATCCACATGTCGTGAACCGATAAAAAGTTGTCGGAGTGTCGGACGTTCTCACCCTCACCCGCCTCACCAGAGAAGGCGGCCTCCATGAGCTTGGGACGGATCTCCAGCATGAGAGTGTTCACCACTTCAACCGTACGACCAGCCAGCTCGGGTAAGCGCTCCATCAAGCCTCCAGAGGTTCGTCCCACTTCGAGTTCTTACAACATGAAGGGACGACGACTCAAGGAAACAACCGGTCCGCGACCTCCATGACGAACCCCCTTCACACCGATGCCACAGCCGGACCCGCATTGAGTACCATGCCCTGCAAGTCCACCGCAGGGACTTCAAGCAGCGGAAGCAGGACCGATCACTGGTCGGGCTGTCAGCCAAAGGGAACGAAAGCAGCGCAGTTGATCTTTAATGCCCCAGGTCAAGAAGT # Right flank : CC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 1858-1402 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZMV01000071.1 Micromonospora wenchangensis strain CCTCC AA 2012002 contig071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1857 28 100.0 34 ............................ GCGGACCACCCCCGTCGTCATGGACGCATGGGCG 1795 28 100.0 33 ............................ GCCACCTCCGGCGGGCGCGCGATCTCGATTTTC 1734 28 100.0 33 ............................ CTCTACGGCCAACACCGTATCGGGTGGCCAGCG 1673 28 100.0 33 ............................ TCCGTCCGGGTTGTTGTCCGCCAGGCCGTTGAG 1612 28 100.0 33 ............................ GTCCGGACCCGTGCCCCTGCTGGCCCTGCTGAC 1551 28 96.4 33 .........A.................. CGCGCTGCCGGCGTCGGTGCCCAGCTGCTGGAT 1490 28 92.9 33 .C............T............. TCCTGCCCCCGGCCCGGAGCGCCACCGCCCGAT 1429 28 96.4 0 ..............T............. | ========== ====== ====== ====== ============================ ================================== ================== 8 28 98.2 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : ACCCTGGACGGCAACTGGCTACTACTCACCCGCAAAGCCGGAACACTCCACAAACACCGACCCTCCTGGTGGAACAACTACGGCCTCGACGACGTCCTATGAAGCACCCTCGGTGACCCCACGCGGCGGCACCGTGCCACACCAGCACCCGCGAAGGATCCACCCGTTGAGGCCGCTGAGCGACCACCACGACACGGCGGGGCCGACGGTCGGCAGTACGGCAAGCAAGACGAAGCTGCCCACCGCCTCCTCCGATGTGTGCTGGCCACGGCGGCCGCTGGACCGCTCTCAAACGCCACGAAGCAAAAGGCTCGCCCACGGGCCGGCCGGCCTGGAAACCGGCTGGCCTGTGAGACGCCGATGCCGGGTCCGCATTGACTACCATCCGCAGTACGTCAACCGTCGGCCCCAACCAGCGGAAGCAGGACCGACCCCATGAACGAGCCGTCAGCCAAAGTGAACGAAAACAGCACAGTTGATCTTTAGCGCCCCAGGTCAAG # Right flank : CGCCTACTACGCCCCGATCAAGGCGTCCATGGACTGCTCCCCGCGCATGCTCTTCGGGGTTGGAGCTCACCGAGGTATGTCGAGATGACGCAACACCTCTTGCGCTAGTGCATGATTTCCGGCGGCGATGAACTGCTGCCTTCGATCCATTGCCTTGGCGATGTCTGGGAGGGATTGCAGGTGGTAGTCGAGGGGAACCGGCTGGCCGTCCAGGTCGATGACAGCTCCGCCGGCTGCATGGAGAATGTAGTGGCCCGGTGCCAGGTCCCAAATAGCGAAACCCTTGGCGAACTCCAGCACACCTTCGGTGAACCCAGCGGCCACATGACATAGACTCACTGAACCAAAGTCGACCCCGATCCTTCCGCGACTCTTGCCGTGCTCGTCTGGCTCATCAAGGGCGCTCATCAGCCGCTTTTGAGAAGCCAAGGGAACCAGTCGCTCACCCGGCTTCATGAGAAAGTTCGTGAGAAGAGACTCCGATAGGCGTTTGTGCGGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 4894-4419 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZMV01000071.1 Micromonospora wenchangensis strain CCTCC AA 2012002 contig071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================= ================== 4893 28 100.0 33 ............................ GATCCCGATGACGTACCTGTGGGACAACCACGA 4832 28 96.4 32 ...........................G CTGATCGGAGTCCCGTACGTCTGGGCCTCTGC 4771 28 96.4 33 .................T.......... CGAACTGCCGGAGCTGCCACCCCTGGGCTACCA 4710 28 100.0 33 ............................ ACACATCCACATCACCGGGTCGGTGCGGTGGAC 4649 28 96.4 35 .....................A...... GGTACGCCCCCCCCGACCGGCCGCGTCCCGTGGCC 4586 28 82.1 22 .....................ACC.C.A ACCCCAGATGCACGAGCCTGCG Deletion [4537] 4536 28 67.9 61 .C.T..G..A....T......CG.C..T GTCGTCCCGTGATTGGTTAACGGCCTGCGCTGCGGCCTCGTCGGTGCGGCTACTGCTCGTC C [4519] 4446 28 60.7 0 G....G..A.....T..T..T.G.GCGT | ========== ====== ====== ====== ============================ ============================================================= ================== 8 28 87.5 36 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GCAGGCGGTCAGGCAGCCCATTCGGGCTTGACAAGCAATGCCTGACCGGCGGCGGGTGAAGCCTCCAGCGGAATCTGCTCCGTGGTGCGTCGCAATCCGGCCTGGCACCCGAGGGCTCCCGGCCCTTCGTCGATGTCGGTATTTCGACGTTCCGCTCCCCGCGCGCGCAGGGGTGATCCGCCGATCGTGAGGTGCATCCCGCCCTCTTCAGCCTGCTCCCCGCGCACGCGGGGGTGAGCACGCTCTTCCGACGTGTGCTGGCCACGGCGGCCGCTGGACCGCTCTCAAACGCCACGAAACAAGCGCTCGCTCACGGGGCCGGCCGGCCTGGAAACCGACTGGCGCGTGAGACGCCGGCGCCGCGTCCGCATTGACTACCATCCGCTGTACGTCAACCGTCGGCCTCAACCAGCGGAAGCAGGACCGCCCCCATGAACAAGCCGTCAGCCAAAGTGAACGAAAACAGCACAGTTGATCTTTAGCGCCCCAGGTCAAGAAGC # Right flank : TGGCCGGTGGTGACGTATTCGACGACTGCGGTCCGGGCGGCGGCTGGAGCCACTCGCGCGATCTCGGCAGAGATTTCCACCAGGCCGGCGTCTGGCGACTCGTACACGGTGATGGGTGTGTCGGGTTGCCGCTCGGCGGCATAGCTGCCGTCAGGCAGCCAGCGCACCGCCGCCCGGTCGGCATCGATGTCGATGTCGATGCGGAGGGCGGGTTGGTCGTGGGTACCGATGGTGAGGGTCTGTCCGCAGCCCCCGTGCGGCATGATCGTCTCGATCTGCTCATCGAAGCGACGTCCCGCGTCCTCGGCGTCGGCCAGCTCGAAGGTGTGGCCGTGGTAGTCGCGTAGCAGCAGCGTCAACGGGTGATCCTCTCTCCGGTGCCGGTATAGACACGGTGCCACCACGTGGTTCCGCCGTCGCGGGTGACCCACACTCTCAGGCGGCTACCCTGCGGCAGGATGGCGGGAAGTATCTTGTCGCAGGTCCAGGGGTAGGTCTGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:0, 6:0.25, 7:-0.31, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 4 6106-5895 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZMV01000071.1 Micromonospora wenchangensis strain CCTCC AA 2012002 contig071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6105 28 100.0 33 ............................ CCCGCCCGGCGTCCAGACCGCGCAGTACTGGGC 6044 28 100.0 33 ............................ GGCGGCGTGTTCATCCACCCACGCCTTCGTCCA 5983 28 100.0 33 ............................ GCGGGCACCGTCGCCGGCACCCTCGATCCACTG 5922 28 92.9 0 .....T................G..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 98.2 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : ACTCCTGCGCCGGACACACCACACAGGTGCGCTCACACCACTCGGGCAGCGGACCATCCACCCACCCATGCTATGACCAGGAAGGGCACCAACAGTGACCACTCTCGCCGCGCCACGACACCCACTCGTACGCCACGCCCTCACCGACGCCCGCACCTGGTGCCCCGGGCAGACCATCGACGAACGACCAGCCCTCGTCCACAAACCACCCTCACCACCGACAACCCCAGCACCAAGACGCTCGACGCGATCCAACGCCAAGCCACCACCGCCCTCGAACTCCTCGGCACCAGATCACGCAGCTCCGTCTCTTCATCCAACAGACCATGGTCAACATCGATGAAAGAAGCGGCGGCTCACGACGCCACCGCCGAGGTGTGCGTTGGCTACCATGCTGTGTGGCACCCGGCTGCGGCCTCTACCAGCAGAAGCAGAACGGGCTGTCAGCCAAAGTGAACGAAAACCACGTAGTTGATCTTTAGCGCCCCAGGTCAAGAAGT # Right flank : CCTTCGATGAGATGAGTCGGGTGTGACGGGTAGAGCTGCTCAAAGTGCGTTGGGTTGCATGCGCTGCATGTCCGTTTAGGCGGGCGTGTCCGGCCGTTGAACTGCCACCCGGCTGCCTAGACTCTCGCCCGGTGGCCGAACTCGCGGACGGTGTCGGGACATGAGGGCCGGTCATAGCGCTGGGGGCTGGGGTCTATGAATCATGCCAAGCTGGTCCGGGACAAGATTCCGGAGATCGTCCGCGAGCGGGGGGCGGAGCCGGTAACCAGGATCGCTGGCCCTGACGAATACCGTGGCTTGTTGCGGGACAAGCTGGTCGAAGAGGTCGATGAGTTCTTGGACTCGGAGGACCCCCATGAGTTGGCAGACATTCTGGAAGTTCTGCTGGCACTGGCGATTGATCTTGGTGTTGATCGAGACCAGTTGGAGAGGTTGCGTACGGCCAAGGTGTCCGAGCGTGGAGGGTTCTCCCGTCGGATCGTGTGGTTGGGTAATGCGCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //