Array 1 895-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATN01000045.1 Mycoplasma gallisepticum strain K6222B Contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 894 36 100.0 30 .................................... TCACATCAAAAGCGCGGCAAGTGCTATTGA 828 36 100.0 30 .................................... TCGGTTATTGAGATCTTGAAACACAAGGAA 762 36 100.0 30 .................................... ATAAAACATCGGACAAATACGACATTGATA 696 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCTATTACGC 630 36 100.0 30 .................................... TTGTCTTGACATTTTGGTTTAGTATGATAG 564 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCAATCACCC 498 36 100.0 30 .................................... TAGAATCTTTGTTAAATAGGGGTCGCGTTT 432 36 100.0 30 .................................... AAAAACCCATCAAGTTTGTAGTAGTCAGTG 366 36 100.0 30 .................................... ACCAAAAATGATGTTTATACAACCTAGTTT 300 36 100.0 30 .................................... TTTGTTTTTATCTTGATTCAAAAGACATCA 234 36 100.0 30 .................................... TCTAATACCCCATTTGAATTTGAAAATACA 168 36 100.0 30 .................................... AAGTTACCGTATAACGATATAACTTACGTT 102 36 100.0 30 .................................... AAGCGGCATATCAAATTACGAACGGTGTAG 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-634 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATN01000049.1 Mycoplasma gallisepticum strain K6222B Contig_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1 36 100.0 30 .................................... AAGCGGCATATCAAATTACGAACGGTGTAG 67 36 100.0 32 .................................... GATCCAAGAAAAGATGAAATCTTAAGATACTT 135 36 100.0 30 .................................... ATGTTGAAAAACTTGAAAAACAAGAGATAA 201 36 100.0 32 .................................... GATCCAAGAAAAGATGAAATCTTAAGATACTT 269 36 100.0 30 .................................... ATCAAATTTATGCTAACATAAGTTCAACTT 335 36 100.0 30 .................................... AAAACTTAATATTACGACTTAAATCGTCTC 401 36 100.0 30 .................................... CTGATTCCGGTTGGTAAACTTAACGAACTA 467 36 100.0 30 .................................... ACAGTGTCAAACGACAAACACACCAAAGTT 533 36 100.0 30 .................................... CATCAACAACAGTATCAACACTTTCAAGTC 599 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 10 36 100.0 31 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : | # Right flank : TCACATCAAAAGCGCGGCAAGTGCTATTGAGTTTTAGCACTGTACAATACTTGTGTAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 51470-52167 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATN01000050.1 Mycoplasma gallisepticum strain K6222B Contig_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 51470 36 100.0 30 .................................... CCTCAAATTAAAAAAGATATTTTAAAAAGT 51536 36 100.0 30 .................................... AAAGCGTTTGGCGAATCAATCGAATACTTA 51602 36 100.0 30 .................................... TCAAACGAAAAAATACTTTTGGCGACAACA 51668 36 100.0 30 .................................... AACACCGTTAGTGTTTTGTGGTTTGTTAAT 51734 36 100.0 30 .................................... ACACCCTAAATATCAAACTCGAACAAGTTG 51800 36 100.0 30 .................................... TGTTTTGTGTAGCTATTGATGTCGTAAAGA 51866 36 100.0 30 .................................... AAAACAGAATGTAAATCAAATTCAACGTTA 51932 36 100.0 30 .................................... GATTAATATATCAAAAACAAAGTTAGGTTA 51998 36 100.0 30 .................................... ATGTTGAAAAACTTGAAAAACAAGAGATAA 52064 36 100.0 32 .................................... GATCCAAGAAAAGATGAAATCTTAAGATACTT 52132 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 11 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGCCGTGATATTATCTCGTTAGATACTTCTTACTCTAAAATTCTGAAATCAATAATCAAGATTTCAGAAGATTATATAGATCATGAATTTATCTATTCATATCTGGAGTTATTACATTGATCAAAAGAAATTAAAACAATTATCCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTGAGTAATTTAACTCAAACTACTAATCTAATTATTATGAAAAATGATATTATCTATGATCTTGAAAAACATTTTGAGTTTTTTGAGACATACTGCTTGATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATGAAGAGTTTAAGACCACAATGTCTTTTCATCAGCTAGAAATAATTAAAAAGGAATTAAAAAAGCACATTAATTAGCTTATTTTACTTGACAATGAG # Right flank : TCACATCAAAAGCGCGGCAAGTGCTATTGAGTTTTAGCACTGTACAATACTTGTGTAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 38839-38671 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATN01000063.1 Mycoplasma gallisepticum strain K6222B Contig_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 38838 36 100.0 30 .................................... TCGGATTATTTCTATTACTTATTCTTAAAT 38772 36 100.0 30 .................................... TCTTCACGTAAATCAAAGTTACCAGAATAC 38706 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : | # Right flank : AAAAACAAGTATTTTTTACAAACGAAAAAGTTTTATCATTAAACATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTATTACTTAATCTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGGTAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAGAATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTATCTTGTAGATCCTTGATCGCATAAGATAAGTTGGCAACCTCAATTAGATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACCGTGTTGTTAATACTTGCTTGGTTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATTCCACCAAAATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 461-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATN01000064.1 Mycoplasma gallisepticum strain K6222B Contig_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 460 34 94.4 30 --.................................. ATTTTAAAGATAAATCTGCGCTTGAAGTTG 396 36 100.0 30 .................................... TATACAACTTAGTTTATGACGTTTATATAA 330 36 100.0 30 .................................... TACAAACTCCAATTTACAAAACTGTAACGT 264 36 100.0 30 .................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 198 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 132 36 100.0 30 .................................... TGTCTTTAGAGACAACGGATGTGGAAACAT 66 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.2 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : | # Right flank : CCAATAAATCAAAAAATTCAAGAATTAAATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 3367-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATN01000065.1 Mycoplasma gallisepticum strain K6222B Contig_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3366 36 100.0 30 .................................... AAGCGGCATATCAAATTACGAACGGTGTAG 3300 36 100.0 30 .................................... CCAATTTACAAAACTCTGCGAGTGCTCAAT 3234 36 100.0 30 .................................... CAATCTCAACTTTAGATCAAAAACTGTTAA 3168 36 100.0 30 .................................... GATTAATATTTCAAAAACCAAACTAGGTCA 3102 36 100.0 30 .................................... AAATGGAAAACGAACAACAAGATAAACAAG 3036 36 100.0 30 .................................... TAGAGTTTTTCAAAAATGCTTACATGAATA 2970 36 100.0 30 .................................... ATTGATTGAAAATGTAAGGTTCGTTGTTCT 2904 36 100.0 30 .................................... GTGCGGCGAGGAATTTTAGGCCGACCACGC 2838 36 100.0 30 .................................... AATACTATGACAACTTACATTATAACACTT 2772 36 100.0 30 .................................... ACATAAACTTCGTTGTTCATGTAGGCGTTT 2706 36 100.0 30 .................................... TTGAAATTTGGATGTTTGGGAATTTACATG 2640 36 100.0 30 .................................... GGGAATTTGCACGGCGAAAATCGGCTAATG 2574 36 100.0 30 .................................... AAAAATTTGGTTTTGGGTATTCTGATAATC 2508 36 100.0 31 .................................... AATTTAATCATTCAAGGTTAGTCGTTTGGGG 2441 36 100.0 30 .................................... GTTAATACCGCACTAAATAGTACTGCTAAT 2375 36 100.0 30 .................................... AACAACTTCTTATCCAACCGCAAGCTTCTT 2309 36 100.0 30 .................................... TTAACCAACAAGACTATTTAGGTCTTTTAA 2243 36 100.0 30 .................................... AAAACTTAACTAATTTAACACAAAAAGTTG 2177 36 100.0 30 .................................... ATCTTATTGTTGTTAGCGTTTATTTGACCT 2111 36 100.0 30 .................................... GTAACAGTTTATAAGCAAATCGGGGTAGTG 2045 36 100.0 30 .................................... TCCACCACCCCACTGTCCTACACTATTACC 1979 36 100.0 30 .................................... AATGAAGAGTACAAAAGAATTGTTGATTTG 1913 36 100.0 30 .................................... ACGTAAATAACAAGAACATAGCGGTTTTTA 1847 36 100.0 30 .................................... AATTTAACCATTCAAGATTAGTCGTTTGCG 1781 36 100.0 30 .................................... ATTAATATTTTTATCAGTGATATTAGCTTC 1715 36 100.0 29 .................................... CCAAAAAGTTGAACAAAATAAAACTAGTG 1650 36 100.0 30 .................................... TCATTAAATGTCGATCAAAAAATAAGTACA 1584 36 100.0 30 .................................... AAATAAGACTTTTTTTGAACTTGAAGATTT 1518 36 100.0 30 .................................... TCAAAATCTTGTTTAATACGTTCTACGTTT 1452 36 100.0 30 .................................... TGTTTTTAGAGAACATGGTTGTGGTAGCAT 1386 36 100.0 30 .................................... ATCTCTCTAAAAAGTTGACGATCCATCACC 1320 36 100.0 30 .................................... AAAACTCGATCTAATTTTGAATGTTTTGTC 1254 36 100.0 30 .................................... GTGACTTGTCGTTAATGATGGTGTTGTAGT 1188 36 100.0 30 .................................... AAGATGGGTGGTTTGTGTAGATAAGTACGG 1122 36 100.0 30 .................................... ACTTTAAAGATAAAACAGCTTTAGAAGTCG 1056 36 100.0 30 .................................... AAAAAGAAGGTTACAGATTTAAAAAACATG 990 36 100.0 30 .................................... TAGGCTATTGAGATTTAGAAACACAAGGAA 924 36 100.0 30 .................................... TTAGCAAAAACGAAATAACTCAAAACGATC 858 36 100.0 30 .................................... TTAACATTTCAAAAACAAAATTAGGCTATT 792 36 100.0 30 .................................... TAAATAATGTAATTATATCACGTTTGTCAA 726 36 100.0 30 .................................... TTTTGTCTTGACATTTTTGTTTAATATGAT 660 36 100.0 30 .................................... ATTTTTTAAACCCTGTTAAATACATTAATA 594 36 100.0 30 .................................... TATTTTTTTGCAGGTTTATATAAACTATTG 528 36 100.0 30 .................................... TCCCATTCTATTTTAACGTTTGAAAATGAA 462 36 100.0 30 .................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 396 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 330 36 100.0 30 .................................... TACAAACTCCAATTTACAAAACTGTAACGT 264 36 100.0 30 .................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 198 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 132 36 100.0 30 .................................... TCGGATTATTTCTATTACTTATTCTTAAAT 66 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 51 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : | # Right flank : CATTTTAAAGATAAATCTGCGCTTGAAGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-234 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATN01000066.1 Mycoplasma gallisepticum strain K6222B Contig_66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... TACAAACTCCAATTTACAAAACTGTAACGT 67 36 100.0 30 .................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 133 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 199 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 33 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : | # Right flank : T # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //