Array 1 1120-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVM01000027.1 Corynebacterium diphtheriae bv. gravis strain 72 Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1119 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 1058 29 100.0 32 ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 997 29 100.0 32 ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 936 29 100.0 32 ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 875 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 813 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 751 29 100.0 32 ............................. TTCCGTTGCTCCAGGGGCAAGATTCTTAGTCT 690 29 100.0 32 ............................. GCCCGCAGGTCAGACCACCGTAGTGTCCGGCC 629 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 568 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 507 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 446 29 100.0 32 ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 385 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 324 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 263 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 202 29 100.0 32 ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 141 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 80 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CGTCTTCGAGGATTCGACGGGTTTCCATTGTGCGTCTTCTCCGCACACGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 152870-152452 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVM01000021.1 Corynebacterium diphtheriae bv. gravis strain 72 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 152869 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 152807 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 152743 36 100.0 28 .................................... GCAAAAAATTTAGCAACTGTTAGACGAT 152679 36 100.0 28 .................................... TTCTATGGTACGTGGAAGCCGCTCGCGC 152615 36 100.0 28 .................................... GTGGACGCCGACACCACCAAAGCCCGCA 152551 36 100.0 28 .................................... CAGCACTCGCTCAAGGCTCAGGCAGCGT 152487 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 96.4 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : AGGCGCTCTTGTTGACTACGTGGCCACCATCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATC # Right flank : AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //