Array 1 1152006-1149520 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKR01000001.1 Listeria monocytogenes strain FSL L7-0131 NODE_1_length_1461064_cov_79.051507, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1152005 29 100.0 36 ............................. AAAACTTCGGCTTCGTCTTTTGTAAGCCCCATTGCT 1151940 29 100.0 36 ............................. CACAGTTGGTATGATGCTAATCTGTCTAAAGATTGC 1151875 29 100.0 35 ............................. GGAACTAAATTCATTTGATCTTTGATTGCTTCTTT 1151811 29 100.0 37 ............................. CTTGTTGATAATGTAAAAATGATACAAGTGTCATGTC 1151745 29 100.0 35 ............................. AGGACTACCGATTATCGGTCGGTTGCTTTGCCTAC 1151681 29 100.0 36 ............................. AAATTTTCCTCGTCGAATATATCCATCGCCCATATA 1151616 29 100.0 37 ............................. CCTGAAACATAACAATACTGATCTAGAATTTTAGAGT 1151550 29 100.0 34 ............................. ACTTTTTTCGAATTCTAAAGGTTTACCATGTAAA 1151487 29 100.0 36 ............................. ACGTTTCGATTTTTCGTAAAAGTCTTCCTGTTTTTC 1151422 29 100.0 35 ............................. TAACATGGAGCCACGGCAAACCTATCACTGCCGAA 1151358 29 100.0 37 ............................. ATGAATGGAGAGAAAAAGTAAAAGTTATTTTGAGGAA 1151292 29 100.0 35 ............................. TTATTAAACCGCGCGTTTTTTTCCATTCCGTTAAA 1151228 29 100.0 34 ............................. AATGTAGCACGAATGATTTTTTTGTATTCTTCAT 1151165 29 100.0 36 ............................. CCATTAATGCGTGCAGCATTGTTTAATCCGGAATTG 1151100 29 100.0 36 ............................. TCATTTGCAGTCCTGATGAGGATAACGGTATATCAA 1151035 29 100.0 36 ............................. GATATTATATTGTGCGAAAATATCGGCAGTTGATTC 1150970 29 100.0 35 ............................. AGTAATGAGTAGCGATTAAATTCTAACGCCTATTC 1150906 29 100.0 37 ............................. GAACACGCGCCAGAAAAATGGGCCAAATTCATCGAGT 1150840 29 100.0 34 ............................. ATGGTTGTTGATGATCTTTGGGACGATGGTTTTA 1150777 29 100.0 37 ............................. TCAATCTGCACTTTGCACTTTTGCGTGTCGTTATAAA 1150711 29 100.0 35 ............................. TGCACAAAACCTTGATTATAAGTTGAAGATGTTCT 1150647 29 100.0 36 ............................. TTTGACTTGAAGAAGTAAAGTACCTCCTGCTTTACT 1150582 29 100.0 34 ............................. TACATCGAAATAAAGTTCTTTGCTGTCCGGCTCG 1150519 29 100.0 37 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTT 1150453 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 1150388 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 1150323 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 1150259 29 100.0 36 ............................. CTGATGTAGCTTATTTTTAACTGTTCGGTGAAATAA 1150194 29 100.0 37 ............................. AAATACTTGCAAGTTTATCTTGATGCTTCTGACTATC 1150128 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 1150064 29 100.0 34 ............................. ATCGCAATATCATTCCCTAAAATCATTTCTATTG 1150001 29 96.6 36 .........................G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 1149936 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 1149870 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 1149805 29 100.0 35 ............................. CAGTTTACTTCAATGGATGAAGCGCACGAATACAC 1149741 29 100.0 34 ............................. TTGGATGAAGATGAAGTGATAAATGATGGAGAAG 1149678 29 100.0 34 ............................. ATGTTAAAACTACTGGTAGACCATTGGAGAAACG 1149615 29 100.0 37 ............................. ACGCCAGAAGCTGGTGATAGGAGAGCGCGAGATATTC 1149549 29 93.1 0 .......................C....C | A [1149524] ========== ====== ====== ====== ============================= ===================================== ================== 39 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGCCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGTTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCTGCCCCCGCGAAAAACAATCCCCACATAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTTGCAAACAGCGTCTGCACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1169586-1168906 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKR01000001.1 Listeria monocytogenes strain FSL L7-0131 NODE_1_length_1461064_cov_79.051507, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1169585 29 100.0 36 ............................. AATACTTTTCGACTAACTCAACATTTTCGTCAAATA 1169520 29 100.0 36 ............................. AAGATTGGATCTTTATCTGTTGAAAATATCGATCGC 1169455 29 96.6 36 ..............A.............. TTGCATATTTAAAGACTTGTGCTGTTTTGATTTTAA 1169390 29 96.6 36 ..............A.............. AATCATAATTAGCGACCTCCTAAAAGCTTGTTAATG 1169325 29 96.6 36 ..............A.............. ATACTTCAAATTCGTTTCTTAATATCGAAATTTGTT 1169260 29 96.6 38 ..............A.............. GCGCTTGTAGTTGAAACCGATAGAAGACAAGCACTTAA 1169193 29 100.0 35 ............................. TGTTGAGTGCTTCAACCAAGTACAACGCACGATAA 1169129 29 100.0 36 ............................. TGAAACTATCCGTTTCTTTGGTCTTCACTTGCCCCG 1169064 29 100.0 36 ............................. TGTCGATCTTGCGCAGTTAAGGTAAATGCTGGTTCT 1168999 29 86.2 36 A......A......A..........G... TCGTAATCTCCTTGTTCTCTTGTATTGTCTATACCG 1168934 29 79.3 0 T.....A........CA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 95.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGGCGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTTGTGATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGATCGACAGAAAGGGGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTTTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //