Array 1 6-816 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATOH01000021.1 Serratia marcescens MC6001 S_marcescensMC6001-1.0-21.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 ............................ TTGGGGTGACGGCTACGCCGGGACGCGCTGAC 66 28 100.0 32 ............................ GTGCAGACAGCACTGGCACGATCACGTTAACC 126 28 100.0 32 ............................ ATCATGGAAAGCCTTTATTCTAAAAAGAAATA 186 28 100.0 32 ............................ TCGGCCTGTTCCCACGTCAGCAACCATGTGAA 246 28 100.0 32 ............................ TAAGCAGCAAAATAAACCTCAACAGTCGAATG 306 28 100.0 32 ............................ GATGGATACCATTGCCAATCAGGTGGCCAGCA 366 28 100.0 32 ............................ TGGCGAACGTGGACTATTACGGCGACGCCGCT 426 28 100.0 32 ............................ ACAAAACCTATTTCAGCCGGACGCTGCGCGAA 486 28 100.0 32 ............................ ATCGGCCGAGCGGGCGTGAAAACGGTAGGAAC 546 28 100.0 32 ............................ GATAAGGATAAGGCTCGACGCCGTGCAGCCGC 606 28 100.0 32 ............................ ATTACTGAACACCCACCAGCGGAGCAGTCAAA 666 28 100.0 32 ............................ TTCGCTTCCAGCTCTGCCAGTAGTTCGAGAAC 726 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 786 28 96.4 0 ....................A....... | A,A,G [806,809,812] ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGATAG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9298-10404 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATOH01000021.1 Serratia marcescens MC6001 S_marcescensMC6001-1.0-21.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9298 28 100.0 32 ............................ ATACAGTCGGAGATCAACCCGGCGGCGAACGG 9358 28 100.0 32 ............................ ATAACTGACGCTTAGCGGGTCAGTCTTCCACC 9418 28 100.0 32 ............................ TCAGTGTTGCCGGTGCCGCTTGCTGCCGCCAG 9478 28 100.0 32 ............................ TGATGGCTCAAGCAATGAGCATAAAGGTTGGC 9538 28 100.0 32 ............................ ATGATCGGCCCGCTGCCCAAGCGCATGCGCGC 9598 28 100.0 32 ............................ ATAGCGCAGTCCTTCACGCGATTAGCGTATGC 9658 28 100.0 32 ............................ GTATGCACTGTGGACTCCAGGTCATCGAGGCT 9718 28 100.0 32 ............................ AGAAAGGCATTCCGCCCTGGAAGATTCACCAC 9778 28 100.0 32 ............................ ATTCGGACGCGCTGCTGAGCGCCCAGGCGAGA 9838 28 100.0 32 ............................ AATAGGTTGGCTCGTAAAAGTGAATCGTGTCC 9898 28 100.0 32 ............................ CGGGTGCGTGGGCGCCCATCATTAGCTAAAAC 9958 28 100.0 32 ............................ TGGCACCGATTGGCAGGATATTACCGGCACGT 10018 28 100.0 32 ............................ ACGAGCATGGATAGTCGGGTGCGCGTGTTCGT 10078 28 96.4 32 ..........................G. GCCCCGCCAGCGCCAGCAGTGCCGGATGACTA 10138 28 100.0 32 ............................ TGGCTAATGACCCAACTTACAGCACGGCAAGC 10198 28 100.0 32 ............................ AGGGAAATCCAGGCCGATGAGGAAACGCGCAC 10258 28 100.0 32 ............................ ACGGAGGTGGCCGGCAGCTTGATGGAGAAGAT 10318 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 10378 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2011-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE375678.1 Serratia marcescens MC6001 Contig283, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2010 28 100.0 32 ............................ ACGATGCCGTCGGTGTTCGCCGAAACGACGCT 1950 28 100.0 32 ............................ TGTGCGCAGATCCCTAACTGGATTTATGACGG 1890 28 100.0 32 ............................ GGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGC 1830 28 100.0 32 ............................ GTCCCCCTGCCAGGCACTCATGAGTCGACAGC 1770 28 100.0 32 ............................ AAAATCAGCCCAGATTGTTGCATATCAGGCAC 1710 28 100.0 32 ............................ TGCCAGCGTCACGGCGGGCTTCGACCTGTGCG 1650 28 100.0 32 ............................ AACGAGGGTAAATTCGTCGCCAAAATGAAGCA 1590 28 100.0 32 ............................ TTTCACTGCGCCGCCCTTCACGCCCCGGATGG 1530 28 100.0 32 ............................ TATGGCTATCTCAACGATCCAAACTTCTTGCC 1470 28 100.0 32 ............................ AGAAAGCCGGAGAGCTGGCCGACGATCAGGAC 1410 28 100.0 32 ............................ ACTCTATGCGGCAAACCTCACCGACCCGCATG 1350 28 100.0 32 ............................ TTTGCTCCAGGCAGCTCCAGGTGCATGCGTCA 1290 28 100.0 32 ............................ ACAGATGCGTTATATGGGAACCCGTTCGCGGT 1230 28 100.0 32 ............................ TGATTCACAGCGGGCAAAATGCTGTCGGGTGC 1170 28 100.0 32 ............................ GCGAACAAATAACCTACGTTTCCAGGATTGAT 1110 28 100.0 32 ............................ AGTTATCGATTGCCGAGCGCGCCGCCTTTGGT 1050 28 100.0 32 ............................ CCACTGAGCAAAGCGTGGGTCATTGACGTAAT 990 28 100.0 32 ............................ TTCACAATCTTTCCTTTCTCGTCGCGGTGATA 930 28 100.0 32 ............................ TGCCGTATCGATGTCGGTCAGCACCACCCGCC 870 28 100.0 32 ............................ TGTCCGAGGGTATCGATTGCACCCGAGAGGGA 810 28 100.0 32 ............................ TTACTGGCCTTCTCCAGTCTTTGAGCCTTTTC 750 28 100.0 32 ............................ AGCGCGTCGCGGACGTGATGACCAAAGGTTTC 690 28 100.0 33 ............................ ATGCTCATTTTCGCGGGCAAACGGCGCAAATCG 629 28 100.0 32 ............................ GATCAGCGGTAGGGATGAAATCGCCCGTTCCG 569 28 100.0 32 ............................ AGTAAGTGGCTTTGGTAGGTGGTGCGATTAAC 509 28 100.0 32 ............................ GACGTCGGCGCGGATTTCGGCATGGAGGCGCC 449 28 100.0 32 ............................ ATCAGGGGCATGCAACATGGCAGAGGATAAAC 389 28 100.0 32 ............................ ATAGTTACCCCTTGCCGAGTTAGAAAATGACC 329 28 92.9 31 .......................GA... TGTTTTTTTTCTCAAACCCCTGAGCGGCTTT 270 28 100.0 32 ............................ TGGAACGCAGTAGTGCGGGGGTCAAATACGAT 210 28 100.0 32 ............................ GGACTTCAGCCTGTGCTAAGAGCGTGACGAGC 150 28 100.0 32 ............................ TCCTGAGGTGTTTGACCGCGTCTTCGGATTTG 90 28 100.0 32 ............................ TACGCCACCGCCTGCAGCGGCTCCTGCCGATA 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGATACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAGTCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCATCAGTGGTGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGGTTGCCGAACCCTTTTTTGAGTGATACTTTTAATTTATTGATTTTAAATCATATTTTTAATCGCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : ATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5-392 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATOH01000052.1 Serratia marcescens MC6001 S_marcescensMC6001-1.0-54.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 ............................ TGTATCGAACATCGTCAATGTGACGGTAAATA 65 28 100.0 32 ............................ GAAACTTCGCCATTCCATCCGGCGCCGTCGGT 125 28 100.0 32 ............................ AATGATAATTTCTGCCGTGCCGGCATCCTCTG 185 28 100.0 32 ............................ AGGGAATCGGTTGATATCGCGCTGGTACGCCA 245 28 100.0 32 ............................ AGCGACCGGGAACCCGTTCGCGATCGAAACCC 305 28 100.0 32 ............................ ATAGGGATCGTGGCGCGCGTCACCAGCTGATA 365 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATAG # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //