Array 1 477647-469745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPA010000001.1 Bifidobacterium asteroides strain W8109 NODE_1_length_768839_cov_219.240379, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 477646 29 96.6 32 ............................C CCCTCCTACCCGGGACGCACCTCCGCCAGCTC 477585 29 96.6 32 ............................C CAGCAGGTGTGCTCGGGCACGTTCCCCTCGCG 477524 29 100.0 32 ............................. TCGAGTCGAAGGTGTCATACTTCATTGTTTCT 477463 29 96.6 32 ............................C TCTGTCAAAGACCATGACCTGGCGGGGCGGCA 477402 29 96.6 32 ............................G GATTACCATGCAGTTAATCACCAAAGACATAG 477341 29 96.6 32 ............................C TACAATAATAGCACTACCGCCGGAATGGCGAT 477280 29 96.6 32 ............................G GGCACATGGTGTTTTCCAGATTTTCGGCTATG 477219 29 96.6 32 ............................C CGAAAACCCGGCCTCCGCTGCAAACTGCTTCT 477158 29 96.6 32 ............................C CTATATCAAAGCCTATGACCGGGTTCCGCGAT 477097 29 96.6 33 ............................C CATTATGAGTGATTGGCTGTGGTCCCCGACCAG 477035 29 96.6 32 ............................A GGAGCAGGAGATGGCTGTAAAACATAGAGCTG 476974 29 96.6 32 ............................C TGGCGGCAGGCCGCCATGTGGCAGTACACGGC 476913 29 96.6 32 ............................G TCGGCAAGCGTTTATTGTGGGCGCGAGAAGCC 476852 29 96.6 32 ............................C CGTTCGCCTTTGACCATGCTTTTGACCTGCGG 476791 29 100.0 32 ............................. AATGTCATTTCAATGAACCGTTCATCGATCCC 476730 29 96.6 32 ............................C GACAGAATCGTCTTCTTGCGTTTCCAGTCATA 476669 29 96.6 32 ............................G CCATGGCGAATCAGTTCAACGCGCTGAACAGC 476608 29 96.6 32 ............................C CAAAAGCCATAGGCGTATCATCAGTGGTCGGT 476547 29 100.0 32 ............................. ATCAAAATTATCGCCAAAGAACTTATCGTCAC 476486 29 96.6 32 ............................C TGTGGTTGACTTGGCACTAGACCGGCCACCAC 476425 29 96.6 32 ............................G GCGGGTTAAGAAACACGGTCTCGCCGCCCCAG 476364 29 100.0 32 ............................. CGAGGGTCATCCCGTCCCCAGGACCGGACCAT 476303 29 100.0 32 ............................. AGTGCGCAACGCGACGATGCAAATAAACATCA 476242 29 96.6 32 ............................C ATCATTTACGTCGGCGAAACGCTGGCGTGGTA 476181 29 96.6 32 ............................C CAGGATGATACCAGTGATCAGCCCGACCCGCA 476120 29 100.0 32 ............................. GATTACGACACGGCATGGTACGGTTCGCCAAT 476059 29 100.0 32 ............................. CCACGAATAGTCACGGATGGCAAGTATGAATT 475998 29 96.6 32 ............................G GTCATACAGTTTCCCGTCAGCCATGACAAACG 475937 29 100.0 32 ............................. CCCCCGGCAAAGCCATGACATATCCGCCTATG 475876 29 100.0 32 ............................. TCGTAGGCACCGACCATCCATCATTTTTGAAG 475815 29 96.6 32 ............................C TGAAAATAATATTGAACCAAATACTGCAATTG 475754 29 100.0 32 ............................. GAGCTGGGACGAAATCCAAGCAATTACGGATG 475693 29 100.0 32 ............................. GCATCTCATCATCGTAGTCGTCCTCATCATCC 475632 29 100.0 32 ............................. CCATTCCAGCACATCATGCCTGTCAGGCCATG 475571 29 100.0 32 ............................. ACCACTATGGATATAAGCGGGCCGTTTAGTAC 475510 29 100.0 32 ............................. CATCTAAGTCCATCCAGAGCATGGCTGACCAT 475449 29 100.0 32 ............................. CTGGAATGCAGGCTATTCGGGTGCAAGTTTGG 475388 29 96.6 32 ............................C GCCTTGGTGACCACTGATTGAGCCACGCCAGC 475327 29 100.0 32 ............................. GTTCCATCTCATTTTCCTTTCTGTCCACCATG 475266 29 100.0 32 ............................. GCCAGTGTCTGCCGCAGTAGTCTTTCCGGTTT 475205 29 96.6 32 ............................C GTATCAAAGACATGTTTGACCGGATAGGCGCG 475144 29 93.1 32 .........A..................C TGTACGGCACCGTTGCAAACCACGAAGGCATG 475083 29 100.0 32 ............................. GTGGTGAGCGTGTCGCGATACGTGAAAGGCTG 475022 29 100.0 32 ............................. ATGGGGATAGAGTACTATGACCGCGACGCGGC 474961 29 96.6 32 ............................C CGTGAGGCACCAGCAGGTGGGGGCCATCCTTG 474900 29 100.0 32 ............................. AATAGCACTTGTGCCGGTGTAGCACAAGTGCT 474839 29 100.0 32 ............................. GACTATCCGACGGTGCATAAACCACATCATCG 474778 29 96.6 32 ............................G GGGCGAGGGTGGATCCTCCCACCCCCATCGCG 474717 29 100.0 32 ............................. AACGCCTTTATCGGTCACCAGATAAGAATGCA 474656 29 96.6 32 ............................G CCACGAAACGCAACAAGGAAGGCAAGGACGAG 474595 29 96.6 32 ............................C TACGCTCCTATATTTACCGTCAAAACCATCAT 474534 29 100.0 32 ............................. ATGCTCAGGACGCATCAAGAGATTGCCGACTC 474473 29 100.0 32 ............................. CTTCCCCTCCGCCGCGATCTTCGTTCCACAGA 474412 29 96.6 32 ............................C AGGCCCAAAACGAACAATTCGGCAACAATCAG 474351 29 96.6 32 ............................C GGGTCAGCCAACAGAGCCGACGACATGGCCTA 474290 29 96.6 32 ............................C TTTCATACGTTGCCATAGACTCATTTTGCTCA 474229 29 96.6 32 ............................C CACGTATCACCTCAGATACAATCCCGGCGTAG 474168 29 100.0 32 ............................. GGCGCGCATACCCTCCTCCATGGCCTCGGCCT 474107 29 96.6 32 ............................C AACTACTATAATCCAACAAAATTCAAACCAGT 474046 29 100.0 32 ............................. TCGGACTGCCGATCGATCTGCCTATCGCGTTC 473985 29 96.6 32 ............................C TCCATCAACAATGGCGCACTGAACGAAAGCAA 473924 29 96.6 32 ............................A GGACAGAGGAGAAAAGGAAAACAACAACGAAT 473863 29 100.0 32 ............................. GAGTTGGTGAGGTTTTGGTCTTGGGCGAGCTG 473802 29 96.6 32 ............................C CATTGGGCACCGTCAACGGAAAACTGCAAACA 473741 29 96.6 32 ............................G CCTGGTGGCTCACACACGCGCGAGAGGTCATC 473680 29 100.0 32 ............................. TCACCTGATCCAGTGTGGCGAATTTTGAATCA 473619 29 100.0 32 ............................. CGCTAGTACCCTCTAGATACGCTTTAGCAAGA 473558 29 96.6 32 ............................G CGTTTCACCGGTGAACAGATGAACGCCATCAT 473497 29 96.6 32 ............................A GGAATCAAAAATGGAAGTGCATGAGATTGTCA 473436 29 93.1 32 ...A........................C ACCCGTGGATACATCGGCAAGGGCGTGATGCC 473375 29 100.0 32 ............................. GTCGCCCGCCAGATCCTCGCACCCTATGGTCA 473314 29 100.0 32 ............................. ACACGATTCACGCCACAAAGGACGTTAAACGT 473253 29 100.0 32 ............................. CAAGGTACACCCCGCCTGATCCGATCCCATTA 473192 29 96.6 32 ............................C GACCCTGACCCTCGCAAGCATGACAGCGGGCG 473131 29 96.6 32 ............................G GAAGCGATCTCGCTTTCGCCTTTTGTCCCGGC 473070 29 96.6 32 ............................G TGGTCATCGGCGTCTTTGCCGGTCTGGGCAAG 473009 29 96.6 32 ............................G GCTGGGCTTTCCTCCAGGCAGGCCGCACGGAG 472948 29 100.0 32 ............................. TCAACACGTTCATGACCATGCTGGCAGACGAG 472887 29 96.6 32 ............................C TTCGCAACCATCGGGGCGCTCGTGGTCACCCC 472826 29 96.6 33 ............................C TAGGGTCATACATGCGCCCATAGGGGTTGACGA 472764 29 100.0 32 ............................. ATCCAAGACCTCGGATATTGCCACTACGTCTG 472703 29 100.0 32 ............................. TGTTTGAACACATCCATGATCGCGTTGTTTCC 472642 29 96.6 32 ............................A GCAACCCCAAGCAGTATTTGTCGCCGGATTCC 472581 29 96.6 32 ............................C CACATCTCACTGGCTTTGTTGGGATACTGAGT 472520 29 96.6 32 ............................C TTGGCGGGTGCCATTATCTGTAATCCCGCACG 472459 29 100.0 32 ............................. CGCTTGGATGTCGCCCCAACTCATGCTTGTTC 472398 29 96.6 32 ............................G TAGGTGCCGGTGGAGGGGTCAATCTCGCCGGC 472337 29 96.6 33 ............................G CATCATGTGTCGGTAACATCTTTGGACAATGGT 472275 29 96.6 32 ............................G CCGGAGACAAACCCCGCCCCATTGGCCGAGTG 472214 29 96.6 32 ............................C ATTTCGCGGATACGCTCTGTATATTCCGCCAC 472153 29 96.6 32 ............................G TCGGTCGTCACCACCATCAATGATGAGCTCAA 472092 29 100.0 32 ............................. TCTACCGCGACGATCTCAATACTTTTTTCACG 472031 29 96.6 32 ............................C CAGAACCGATAGGCCCCGTGGTACACGGTCGG 471970 29 96.6 32 ............................A CGCCACGTGTAGGCGGGCATCCGGTACAACTG 471909 29 96.6 32 ............................C TCCTCCCCAGTGGTCCAGGAGACAAGCCCAGG 471848 29 96.6 32 ............................G CGCACAGCTTTGTGCGGATATTGCAAAAAGAT 471787 29 100.0 32 ............................. GCAGCAGATCCAGGTTTGCCGTGGCGCTGACC 471726 29 96.6 32 ..........................T.. CTTGCGCAAAAGTCTACGCGCACGAGCCTGTG 471665 29 96.6 32 ............................C ACGCTGATAATCAGCTGCTAAATCTCTGGTAT 471604 29 100.0 32 ............................. ACACCAGCACCCGGCAGACGCATACACCAACG 471543 29 100.0 32 ............................. AGGGTCTACTATCGGCCTGTGCCAATCGCTGT 471482 29 96.6 32 ............................G CGCCCGCTGCTGGTCGCCGGTCAGCACCAGCT 471421 29 100.0 32 ............................. TGAAAACTCTGCCACACGTCCAGCATGATATG 471360 29 100.0 32 ............................. GGACCGATGCCGGGGACATTGTGGGGCCACAG 471299 29 100.0 32 ............................. CACAAGATCGCCGCGCATTACGCCTTGCGAGA 471238 29 100.0 32 ............................. CCGTGGTCCGGCAGGCCAGCGAGTACACCCAG 471177 29 100.0 32 ............................. GCTTCCAGCACCTTGGCGGGGATGAGCATGAT 471116 29 100.0 32 ............................. GAGCATAATGCCGCGAGCGCGGACATGGGCGG 471055 29 100.0 32 ............................. GTTGCTTGCTTTATAGATTGTCTTTGCGTAAA 470994 29 96.6 32 ............................C AACTGGGATTCGAACGCCAAAGCCGGCATCCC 470933 29 96.6 32 ............................C CGGATATTTGCCTACCAGTATCTCGCTCTCAG 470872 29 96.6 32 ............................C CACTCGGGCAGGGTGCCCAGGAGCGCCCCCTG 470811 29 100.0 32 ............................. TCCTGGAGACTCAAAAGTTCGACACTACTCAG 470750 29 96.6 32 ............................C CATGTTCGCCGGCGGCCCCTACCCGGCCGGAC 470689 29 96.6 32 ............................C TTCACCACGAGTGCCATATCTCCAAGGTGACG 470628 29 93.1 32 .......................T....G GCTGTCGAGGGGATGCGGATCAGGATGTCGCC 470567 29 96.6 32 ............................A GATGGAAGAACAACCTCGAATACCCTCCCAAA 470506 29 96.6 32 ............................C CGATACGACAAAAATAGGATCTACATGCGGGC 470445 29 96.6 32 ............................G CACCACGGTGTCGTAAAAGTAGGTGCCGGTGG 470384 29 96.6 32 ............................C TCGGCCTCAAGGTCCGGCACGTCCACGAAAGG 470323 29 96.6 32 ............................C TCTGGCCGTATCCCAGCCATCAAGGTAGGCAG 470262 29 93.1 32 ..........................G.A TGTGTTCCACGCGGCCCCAGGGCATGATCAAG CC [470252] 470199 29 100.0 32 ............................. GACTTACGACAAGCAGTGGAATGAGCCAACAA 470138 29 96.6 31 ............................G ATACGATGCCCTGTTTTGCTATATTGCGCTA 470078 29 96.6 32 ............................G CTATGAGGATAAGCTGATCCATCTAGCCAACT 470017 29 96.6 32 ............................C AGGGTGGACATGTGGCTGAAACGCGGGAAACT 469956 29 100.0 32 ............................. AATGTTTGCAACAGTTACGGATTCCCTCAAAA 469895 29 96.6 32 ............................C GACAGGACCCTGCGGTGGGTCAAGGACCGGCG 469834 29 93.1 32 .................A..........C CGATCACCGGATTGCGTGACAACTGGTAGGTA 469773 29 89.7 0 ......T......T...........C... | ========== ====== ====== ====== ============================= ================================= ================== 130 29 97.7 32 GTGTTCCCCGCATCCGCGGGGATGATCCT # Left flank : CACATCACCGCTAGGGTTCGGGACCGGCTCTGGGAACGCATCACAGGGCAGATCCGAACCGGCAAGGCCATTATGGTCTATTCCGCCCGCAATGAGCAGCATCTGAGTTTCAAAGTGCATCGCTCAGATTGGAACCCGGTAGACTGTGAAGGATTGACTCTTATGGAGAGGCCTACGGATGGCGGAGATGGCAGATCTGCGGGTGGTGGAAACCGATACCGCCGGACTGGTTGGAGCAATGCCAGCAAGTACAGACGTGCGGCGAGGTTCCGGCGCTCGCAATCCGGCTGAGCCCAAGCGGGTCTGCACTTTTCAGATGGGTTTTGCCGATGAGTGCCGAGTACTGATTATTAAGCCAGTGCATTGATAAGGAGTTTGGTGTATATGGTCTGAATTGTAATGGCTGAGACGGGGAATAGAGGGGGGGGCTGGAAATGCAAACTCATTAAAAATCAGAAATCTTGGTTATTGTATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : AAAGGACATCTAATGGATGCCTTCAGGTTCACCATTATGAGAGGAGACGACCAGAAAATGCATAAGGCTTTAATAAGCGAAATGGCATCCAGGGATTGTGCCTGCACCCGTCATGACAGCATTCCTGAGGATCTGATTGACGGCTATCCGCCGAGACACGCATAATCGAGAAAATGGGTGAAACTAAGCTCCTGGTCTGGAATTCGCTGGATGATGCGGACAAGAGAATGATCCAATCGGATTGCGTATACTACGGTACAGGCTGCGGCGGCGAAACAGAGGTGGGTTTCTACGACGTTATCGGCATAATGCGATTCGACTGGTTCATTCACGTGCTCCCACATGCTGTTTCAATCAGCAAAAGAATCGCTATAGGAGCGTCGGCGGAGAATCCATAACAACATTGTGGTTTGAACATGAGTATGATTTAAACTTGAGCGTTTGATTCTCTGAGGATGATCCGGCCGTCTATTCGATCAAGAACGAGAATACCGTGTGCT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATCCGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //