Array 1 448157-450014 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGT01000001.1 Salmonella enterica subsp. enterica serovar Albany strain BCW_2132 NODE_1_length_683172_cov_3.12415, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 448157 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 448218 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 448279 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 448340 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 448401 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 448462 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 448523 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 448584 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 448645 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 448706 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 448767 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 448828 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 448889 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 448950 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 449011 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 449072 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 449133 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 449194 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 449255 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 449316 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 449377 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 449438 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 449499 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 449560 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 449621 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 449682 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 449743 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 449804 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 449865 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 449926 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 449987 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 466572-469470 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGT01000001.1 Salmonella enterica subsp. enterica serovar Albany strain BCW_2132 NODE_1_length_683172_cov_3.12415, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 466572 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 466633 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 466694 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 466755 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 466816 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 466877 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 466938 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 466999 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 467060 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 467121 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 467182 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 467243 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 467304 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 467365 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 467426 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 467487 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 467548 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 467609 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 467670 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 467731 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 467792 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 467853 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 467914 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 467975 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 468036 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 468097 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 468158 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 468219 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 468280 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 468341 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 468402 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 468463 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 468524 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 468586 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 468647 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 468708 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 468769 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 468830 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 468891 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 468952 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 469013 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 469075 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 469136 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 469197 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 469258 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 469319 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 469380 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 469441 29 100.0 0 ............................. | A [469468] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //