Array 1 291028-292924 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSGY01000003.1 Bifidobacterium longum strain AM39-10AC AM39-10AC.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 291028 33 93.9 35 ...............................CC TTTGGTGTGATTTTCGGTTTCGCCGTTGCGCCGGC 291096 33 97.0 34 ................................G CCATCTCCACTTTGAGCTCCCGCCAATGCTTGCG 291163 33 97.0 34 ................................T TGGCTCCGCGCAGATGGACATAGCCAACCACGGC 291230 33 97.0 34 ................................T CGTTGGATTGCGCCACCTCATCGGAAATGAGCCG 291297 33 100.0 32 ................................. CGTATTGATGGATGGTGCCGTCTCCGCCTATC 291362 33 97.0 35 ................................T GATAGTCTCCTTGGGCGGCGTAGGCGGCCAGCCCA 291430 33 97.0 34 ................................G GATTGTCGCCAAACGTCGGCAGATTATAGTGGGT 291497 33 97.0 32 ................................C CCATGCCGTGCCGCCGTCGATGCGCCCGTCCG 291562 33 100.0 33 ................................. CCTCCGAAAACGGTTTGGCCTCGCTCACTTCGC 291628 33 100.0 34 ................................. TTCGGTGCGTCGAATATGTCAACGCCCATTGCAC 291695 33 100.0 33 ................................. ATGTTATTGATGTCGATTCCGCTGGGCACGTAT 291761 33 97.0 33 ................................C GTGATTTTAACAATTTGATGACGAAGAACAATA 291827 33 100.0 34 ................................. CGACCGACGCGGGTACCAGCATCACGGTCGTGAC 291894 33 97.0 32 ................................C TGATTGATATCCCCGTTATCAATGAGATGACC 291959 33 97.0 35 ................................T TAGTTATGGCAGTTACTGAAAATTGTATCATACGA 292027 33 97.0 34 ................................T TGAGCTGAGTAGATGACATGAGGGTGGCCATCTG 292094 33 100.0 35 ................................. TCAAAAACAATGGTCCGCACCTTGGGGTATGCAAC 292162 33 100.0 34 ................................. AATCAACAATCGAGGATACGGTCTACCAATCGAC 292229 33 97.0 34 ................................T GAACCTCGCCCAGCAGGATTGCGTCGCCATGCGA 292296 33 97.0 33 ................................G ATAGGGGAGTGCTGCACGTGGGCGGCAACCTCG 292362 33 97.0 32 ................................T GCACGGTGCCGCTGGCACCCTTGAACAGGGTG 292427 33 100.0 32 ................................. TGGCGGAATGCGAACGCCTTTCCGGCGGTGTG 292492 33 97.0 34 ................................C ACAGACTACTGATGATCTGCGACCCGGCGCTTAC 292559 33 97.0 34 ................................C TCTCGCTGGCAAACAACCAATAGAAAGGATGATC 292626 33 100.0 33 ................................. ACGAGGAACCACGCGAGGAAGGCGAGACATTCG 292692 33 100.0 34 ................................. CCGTGGCGTGGACCGTGGCGGACGATACGGGCGT 292759 33 97.0 33 ................................T CGCGCCGGAATGGCATGGGGACATCAACACGCA 292825 33 97.0 34 ................................C GCGACGCGATGGCCGACGGGCAGATCACCGCGCA 292892 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 29 33 98.0 34 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGCGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGGTGGAGCTTCCATATTATGGAATGCTATGCCCATTCTCGCA # Right flank : AAGAACAGATTCGTAGGACACTGCGAAAAAACAGATAGGGGCTTTCCGCCATCAACAGCGGAAAGCCCCCTATTCTTATGGTCTATCTGCCCTAATTAGAGCACCTCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTCTCCCACGGGAACTCAACGTCCGTGCGGCCGAAGTGACCATACGCGGCGGTCTTCAGATAAATCGGACGTTTCAGATCCAGCTCGTCGATAATCGCAGCGGGGCGCAGATCGAAGACCTTGCGCACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTTTCCACGTTGACGGACACCGGATCGGCAACACCAATAGCGTAGGCGATCTGGATCTCAACCTTGTGGGCCAGACCGGCGGCCACGATGTTCTTGGCAACCCAGCGAGTCGCGTATGCGGCAGAACGGTCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCCGCCACCATGAT # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //