Array 1 1030344-1034394 **** Predicted by CRISPRDetect 2.4 *** >NC_015847.1 Methanococcus maripaludis X1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1030344 37 100.0 35 ..................................... TTACCTCTATCATATACATATTTATCTTATAGATT 1030416 37 100.0 35 ..................................... ATTTTTCGGGTTATCCCATCTGCAAGAATTATATT 1030488 37 100.0 38 ..................................... CAGTATTAGATATAACTGATCCTGAATGCTACCAAGTT 1030563 37 100.0 35 ..................................... ACGCTTTTCTTACCATCTCAGTTCTGTCGTAAGTT 1030635 37 100.0 37 ..................................... AAAAAAAATAATTAAATTTCCCATCCAAAGTCATCAG 1030709 37 100.0 36 ..................................... TTAATGGTGGCGTATTTTTCAATATTTCCCGAAGAG 1030782 37 100.0 37 ..................................... AAAAAAAATAATTAAATTTCCCATCCAAAGTCATCAG 1030856 37 100.0 36 ..................................... TTAATGGTGGCGTATTTTTCAATATTTCCCGAAGAG 1030929 37 100.0 36 ..................................... AAATGTTTTTGCCGGCAATTCGTAAAAGACAGCAGG 1031002 37 100.0 36 ..................................... ATTTTTTTAAATTCATTTACGAGGATATCTATCCTT 1031075 37 100.0 37 ..................................... GTTCCGACTGGGACTCTCATTTTTCCGAGTGTGTTAA 1031149 37 100.0 37 ..................................... AAAATAACTCTTTAATGTCTTCTTTTTTGTATTTATT 1031223 37 100.0 34 ..................................... CCAATGTCTGTTGGTAGTGAAAATATTTTACCAA 1031294 37 100.0 35 ..................................... ATGGATCAATGGAACAAATGAGGTGACCAACTTGT 1031366 37 100.0 35 ..................................... TAGATGGATTAACTGCGTATAATTTAGATTATAAT 1031438 37 100.0 35 ..................................... ACCGTTTCACAAAGTTTAAAACTGCAGTCTTCACT 1031510 37 100.0 36 ..................................... GTTCTTTTCCAAGCGTTATAATAAACTCATTACCTC 1031583 37 100.0 36 ..................................... TGCCATCATTCCAAGGTCTTCAAAAGAAATTTCAAA 1031656 37 100.0 36 ..................................... CTGTCGTTTCAGTCCAATAAGGCGTTAGGTTTGAAA 1031729 37 100.0 36 ..................................... ATGTCATACAATTATAGTCATCCGGCACTGACTCAA 1031802 37 100.0 34 ..................................... ACTGTTTTTCCTTTTGACTCCATAACAAAAACCG 1031873 37 100.0 37 ..................................... CCTACAATGAAAAGAGAATGACTACCGAATGCGTGTT 1031947 37 100.0 39 ..................................... CTACACGCTTAGAATCTTCTTACTTGCAAGTACCATGGA 1032023 37 100.0 34 ..................................... TTGCAATTGCGTTAGATTTGTTCACTCGAATATC 1032094 37 100.0 34 ..................................... TAACCCCTGTCGATTTTGAAATAATTTTTGAAGT 1032165 37 100.0 41 ..................................... TCGATGAAGCGGCATTCGTTGATGATTATGCAATAAGAGAT 1032243 37 100.0 35 ..................................... TATACTCGTAAAAGAAATATGAATATAGAAACAGA 1032315 37 100.0 36 ..................................... CACGAAGGGGTAGAAGAATGGAGTTAGCAATATATT 1032388 37 100.0 36 ..................................... TTCTCTTTGTCAAAATCAATGATAATCCCCCTTACT 1032461 37 100.0 36 ..................................... TAAAAAGAAACCATGTCTTCTTCAGGTACCCTGCCT 1032534 37 100.0 35 ..................................... CTAAAATTAATTTCCGCATTTTTATGATATTCGTT 1032606 37 100.0 37 ..................................... TCGGTTTTTGTTACGTTCACTTCTGTGTTTACGTATT 1032680 37 100.0 35 ..................................... CATGAAGTTTCAAGACGCAACACTGGTAGAGTTAG 1032752 37 100.0 36 ..................................... AATCGTATTCTCCTCCTAATAATTGCAGTGTATCCC 1032825 37 100.0 36 ..................................... CACATTTTGATGGTGACTGATCCAGGAATGGGTAAA 1032898 37 100.0 36 ..................................... AGCTTCTTTCGTAATCCATATACTCATTCTTAGGGG 1032971 37 100.0 38 ..................................... TTAAATTACGGCTTAGATTATGAAGATAACGCGCTATT 1033046 37 100.0 35 ..................................... TAAAGACGGAAAAATAATAAAAATATACTGGAGAG 1033118 37 100.0 37 ..................................... TCCCACCACAAACCAACACGCTCGGCCGTTCCGTCGT 1033192 37 100.0 35 ..................................... TAAAGACGGAAAAATAATAAAAATATACTGGAGAG 1033264 37 100.0 36 ..................................... AGGATATCGGGCCAATCTGAGCCGTTAACTAACGTA 1033337 37 100.0 35 ..................................... TATACATGGCAACTGCAAAAGAAGCGGACGATATT 1033409 37 100.0 36 ..................................... CAATTACATTGAATGGATGTGTATCGGATTTGGAAT 1033482 37 100.0 35 ..................................... GCATTTCAAAAAACTTATTATAAACTTCCCTAAGA 1033554 37 100.0 37 ..................................... GTATAAAGATACCTTGAGCAGTTTCAGGCCTCATAAA 1033628 37 100.0 36 ..................................... TTGGATAGCAAGTGTATGATGTATTTTGCATATAGT 1033701 37 100.0 36 ..................................... AGTCTTCGATTTCTTCATATTGCTCTTGATTTTCTG 1033774 37 100.0 38 ..................................... CCGTTACCGAATGCGAAAATGTCGGCAGGGGCTCCATT 1033849 37 100.0 36 ..................................... GTTATTTAGATAACCCTTGTGAAAATCCGTACAATG 1033922 37 100.0 35 ..................................... TACTGTCGATAGCCTATTTAGAAAACGGAATAGTA 1033994 37 100.0 34 ..................................... ACAGACTTATTTGCAAAAGGAAAATCATTCAAAA 1034065 37 100.0 34 ..................................... TTGTGCTGATGAAATGTTCGCAGCTGTTGAGGTT 1034136 37 100.0 35 ..................................... CAAGAATCGATATGACATCATCATACGTTCCAGAA 1034208 37 100.0 35 ..................................... GCACACTTCAAGACCGAAAAAAAGACAGTTAGGCA 1034280 37 100.0 41 ..................................... TTAGCCCGCCCCGTTTCCCCTAATTTCACGGTAGCCTGATT 1034358 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 56 37 100.0 36 CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Left flank : GAAATAAATATGACTGAAAAAGACGTCAATAAATTAAGTGAATATTTGGAAGAATTCAGGAAAATATTAACGGGATATTATCCAAAACCAACATCATATAAACAAAGATGTATTGATTGTTGTTATAGAAATATTTGTGTAAAATAGTTTGTTCATTAAAAATTATCAGGCGTTTTCCAAACGTATTTCATTTATTTAAAAAATCAAAATAAGATTTAAAACATTATATTTTAAAAATGCCTGCAAATTTTAAATATTTTTAATCATGTGAAATAAAAATAACTGTAATACTCGGCATAAAATAAAATAATCTGTAAATTTTAATTTAACCAATATTCTAATTTAAATAACGTTTAAAAAGTAATTATATTATATGAATAATCCAATGAACTAATTTAAACGGATATTTATTTTTTGTTGATAAAATGAATAAGCAAAGTACATATAATGGCAGAATCATAAAACTACTTCGTTATTCTAGAGTTTTTATCACATTATCT # Right flank : CCGAAGCAAGAGCAAGTTTAATTTCTAAAACTCTTTTATCTTCTTCGATAGTTCATGTTTTAAAAAAACAGGGCAGAGATAACGATTATAAAATATGCAGACAGATTAACAAAGATGTTGGGCAAAAAATAAGAGAATCTACTAATCAATACTGCATAGTAGTTATTAAACAGAGAATTCTACTTGAATTTTTTAATGATCTGCAAGTTTTATATAATCTGATGATATATGGTATATCATACTGATATAATCTATATCACGGTGATACATATGGTTCATGTTCAAGTTGATTTAAGCGATGATTCAAACAGGATTATTGAGATATTCAAGGCTCAACATTCAATTCCTAAAAAATCTATCGCAATAGATATGTTTATTTCACAATTTGCGAGTTATGGTAAAGAAGCTTTAGAATACAACCCTGCATTTGTAAAAGAAACAATAGAACACAGTAAAGGTAAGGAGTTTATAGATATAACGGATAAAAAATCCAGAAGAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: F [matched CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //