Array 1 6575-6850 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBE01000053.1 Nocardiopsis xinjiangensis YIM 90004 contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 6575 30 100.0 31 .............................. TCACCGACTCCACAGTGAGCGTCCCCGGAGT 6636 30 100.0 31 .............................. ACGGGCGGAGTGGTGAGGCGGCCCGGTACTT 6697 30 93.3 31 ............................TC AACGGCAACGCCAAAGCCCCGGCCGCGTCGG 6758 30 90.0 31 ...........A.G...............A CCTCGGGGGTGAGGAGGGCCCGCACCTCGGT 6819 30 80.0 0 ..........GA.G.............AGC | TG [6842] ========== ====== ====== ====== ============================== =============================== ================== 5 30 92.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GGGTGGCGTGATGCTCGATATCCGTACTGCCGAGTTCCTGGACGCCGTATCCGATGCTCTGGCGGTCCCGCCTGGTCCGCACCCGGTGGCGGATTTCCTGCTTGTGCGTGGTCTGCGCCGCCGTACCGATGCCGTGCGCCAGGCGCTGGCGCTGGTTCAGCGTGATGGGGATGTGGAGGAGGCGTTGGAACTGCTCGACCGTGCGCTGTCCGAGCCTTCGATGCCCGAGCGTGTGAGCGGGTGCGATCTCATCGATCCGGGGCCGCGTCCTGTGGAGGCGCCCCGACAGGGGGGCGATCCCGGGCTCGGTCGTGGGCCCGGCCAGGGCTGAGGGTTCGTGTTCGGTGTCCGGTGTTTCGTGGGGCCTGTTCTGTGGGGCAGGTCCCCGTCATACTGGGGTCTGTGTTGACGAGACCTGTTTCTGTTATCTGCGTGTTATCTGGACCTGTGAAGTTTGCAGTTTTCCGGGTTACTCGTCGGTAGGCATGCAGGTCAGCAAG # Right flank : CCGTTTTCAGTCGCCGGCAAGACCGATATTGACCGCGATCCTTCACCACTACACAAATGGGATCCGGTCCGGATTTGAACAGGGGGCCGCGTACGAACCCTGACCACGGCGTTATCACGGATGCCCCAGTCCCACCACTCAGGGTTTCCGTCCCGTTTTCAGAAGGATCATGGGCAGGTCTTGATCTTTCTCGACCATGTAGGACACCATAAGGCCCGGTCGGTGGTTCCCCCGAATTCCCGGCCGTGGTCCCTTTCTCCCTGACCGGTCAACCCCCGTCACGCCGGCCGGCCCACTCACCCCGAGTCGGTGTTGATGACGCAAGAGCCTTTTCTTGCGTTCCCCGCTGTCATGCCTACTTGGACGGAGCTCCCCCCTTGTCCGTCAGACGTGCTTTGGCCGTCGTATCCGGCCTGGCCATCATCCCCGTGCTTTTCAGCGCCCCCGCTTCGGCAGAAGCCGCTGAAGTCAACTATGTCGCGCTCGGTGATTCCTTCTCT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8315-8526 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBE01000053.1 Nocardiopsis xinjiangensis YIM 90004 contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8315 29 100.0 32 ............................. GAGGCAGCGACCGGCGGGCCTGCGCGGAGGGC 8376 29 96.6 32 .........................C... TTCTTCTCCGGGCGGTAGGCCTCAAGCTTGGT 8437 29 100.0 32 ............................. TGCCGCCCCAGCACCCGGCACCTGTTCCGCCT 8498 29 86.2 0 ...........G.A.......C..A.... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CTCGGTGACACCATCGCTGACAACGCCACCGCGGCCGGCCTGACCCACGTCGACGTACGCGACGGCTTCGAGGGGAACGCTGTCTGCGCTGATGATCCGTGGATCAACGGCACTACCGTGCCCATCGACGAGTCCTACCACCCCAACGCATCCGGCCACTCCGAGGGCTACCTGCCCGCTCTGACCGGCGCCATCGGCTGAGCCACCGTGAAGGCCGCCCGGGATCGAGCGTGCCTCGACGCGCACGCTGCTCCGGGCGGCCGGATCTGCCGGATGTTGAACCGTCCGCTGCCGCCGGTTCCCGGGCGTTTCAGCCCTTCGGCGGTGCACCGGCTGTGACTGAAGTTCAGTAGCCCAGCAACGGCTTGGCCCCCATCGGGATGCACGACATACTGGGTGCTGTGTCTCTGGGGCCTGATGTCGTTACCCACGCGTTATCCAGACCTGTGAAGTTTGCAGATTTCCGGGTTGCTGGTGGGTAGACATGCAGGTCAGCAAGA # Right flank : CGAACCCCGATGAGGTGCCCGGCCCTCGCCGTGCCCCGCCGGCCGGTGCAGGGCGCCGACGGGCCGGGAAACCTCCATCACGTCGGCTTTCCGCTTTGGTACTACTGGTCCGACCAGGCAGTCCAGCCTTCCACAGCTGCGGTTGTGCGGGCCCGCTCGCCAGAGTGAGGAAGCGTCGATGGAACACATGACGGAAGCTCGGGCCAGGCGCAACGTCGTACGCATCGCGGTGATCGCGGGGGTCGGGGGACTCCTGTTCGGCTACGACACGGGGATCATCTCCGGGGCGCTGCTCTTCATCAGGGACGACTTCGACCTCTCGGCGTTCCAGCAGGGCGTGGTGACCAGTTCACTGCTGGTAGGGGCCGTGTTCGGGTCCCTGTACGGCGGGTGGCTCTCCGACCGTTACGGGCGAAGAAGCGTGGTGCTGCTCGCCGCGGTGATCTTCGGTGTCGGCGCGCTGATGGCCGGGCTGGCCCCCAACTATCCGGTCCTGGTCG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 13344-13492 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBE01000053.1 Nocardiopsis xinjiangensis YIM 90004 contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13344 29 100.0 32 ............................. ATGACCTCGTGCACGGCCTGTACCACCAGGTG 13405 29 100.0 32 ............................. AGGTCCGACAGGGCTTCCCAGATACCGCCGAG 13466 27 82.8 0 ...........--........TG.A.... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 34 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CGCGCGGACACCCTGGAGATCCTCCCCGGAGCGCCGGACGGTTGGGTCGACCATCCGGTGGGGATCCGGGTCGAGCGGACCCCCACCCGCTTCGGACGCGTGAGCGTACGGGCCCACCGGAGCGGAACTGCGGGGCCGGGGACGGTCGCGATCGAGGTCGAGAGGCGCTCCCCGAGCCAGGCGTTTCCGCGTGAGTGCGTCCTGCACCTGCCGGGGGAGGGGACCTGGCAGGTCGAGGTCAACGGTGTCGGTATCGGTACACGGCACGGTCCCGGCCGGGTAACGGTCACGGACACTCTCCGGCGATGACCGGTCGGCCGGAGCGTTCCGGTGTTCGGGGTCGGTGTCCGATGCTCGCCGGGGCCTGTTCTCCGGAGCAGGAGCCCGTCATACTGGGTGCTGTGTTTGAGAGGCCTGTTGTCGTTACCTGGGTGTTATCCGGAAGTGCACAGTTTGCAGATTTTCGGGTTACTCGTGGGTAGGAGTGCAGGTCAGGAAGA # Right flank : CCGCCATAAGTGCGGGCTCGAACGACTCCGCGAGGGTCTGTGCCGAAGTTGGCAGCTCTGGGCTGTTAGTGGGGTCGGGCCGGAGGAGAGGGACGTCGGTTGAAGCTCGTGGAACCGGTTCTGATGGGTGGTGGGTCGGGGTCCTGTGGCTGGTGTGGGTGGTGTTCGTCGGAGCGTCGAGCTTAGCCCGGCCGGGGCTTCCCGCAACCCTCTTCGGCGCCCCGCCACACACCTTTCCCTGCGGGGACAGTGGCGGCGTTGTGCGTGGTCGGTGTGGGGCGCCTCGGGGTGTGCGGTCCGCCCCTTGACGCCGGGCTGTTGCGCTCTCGCCGCCGAACACCTACCGGCCGCTGCCCCCATCCGGCCGAAGAAGTGGGGTCCCAAAAGCAAACCCCCTCGGGTGGCGGCATTGCGACCACCGCTTGCGGCGTGTGCATGGTGGCTCGCTTCTGCGACAGGCACAGGCCTGGCCCCGGCACTCCCGGTGGCGGCATTGAGGC # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 17898-18232 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBE01000053.1 Nocardiopsis xinjiangensis YIM 90004 contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17898 29 100.0 32 ............................. CGGCGGGGCCTCGAAGGCTGCCCGCCGGTTCC 17959 29 100.0 32 ............................. TCCATGCCGTCGCACTCGTGGATCGGGTGGCC 18020 29 100.0 32 ............................. AGGGCCAGGGCGCGCCGGTGCCAGCGGCCCAT 18081 29 100.0 32 ............................. GGCGTCCATCAGGTGGTGGGCGATCTCGGAGA 18142 29 100.0 32 ............................. CCGCTCGGTAACCCCGACCAGATCGGCGGCCA 18203 29 89.7 0 .....................G..AG... | A [18226] ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AAGCGTTGGTCACAATGTGGCCACCACAGGGGGGTTGGGCAAGTGTGCGTCCACCATTTCTTCGGCAGCCGGGCGCCTGGGGCGAGGGGGTTCGTCGATACGGNTGCCGCCACCATCCCCGCGAAGAAGCAGGAGTGGGGGTGGCGCCGAAGCGGGTTGCGCGCAGACCCGGCCGGGCTAAAATCCCGACCCCGACGAACCACCGAACCCAGGCACCACAAGAAACCCCACCCTGAGAGTCCTCGAACCCAGAGCACATCAACGAACCCCAACACCGAATCCCGTGGTCCAGGGTCCGTAGGTGGCGGCCATGCCCCGCCGGAGTGTTCCGGTGTCCGGGATCGGTGTCCGGTGCTCGCCGGGGCCTGTTCTCCGGAGCAGGAGCCCGTCATACTGGGTGCTGTGTTGAGAGGCCTGTTGCCGTTACCTGGGTGTTATTCGGAAGTGCACAGTTTGCAGATTTTCGGGTTACTCGTGGGTAGGAGTGCAGGTCAGGAAGA # Right flank : CTCCCACCCATCCAGGGCTCACCGCTGCCCGAAGCTCACCGACTCCGTCGTCCACGCGCGCGCCTGCTCCGACAGCGTGATCCCGAGCCCGGGGCGGTCGGGTACCAGCATCCGTCCGTCCTTGGTCTCCAAGCGCTCGTTGAACAGCGGGTCCAGCCAGTCGAAGTGCTCCACCCACGGCTCCCGCGGGTAGCAGGCCGCCAGGTGCAGGTGGATCTCCATCGCAAAGTGCGGCGCCAGGTCCAGCCCTCTCTGATCCGCCAGCGTCATCAGCCGCAGGAACTGCGTGATGCCACCGACCCGCGGCGCGTCCGGCTGGATGATGTCGCAGGCCGCGCCGTCGATCAGCCGCTCGTGCTCGGCGACGGAGGCCAGCATCTCCCCGGTGGCGACGGGTGTGGTGAGGGTCCGGGCCAGCCGCGCGTGGCCTTCGACGTCGTAGGCGTCCAAGGGCTCCTCGATCCACGTCAGGTCGAACCCCTCGAGCCGCTGGCCCATAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 28194-28345 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBE01000053.1 Nocardiopsis xinjiangensis YIM 90004 contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28194 29 100.0 32 ............................. GACAGGCACGACTATTGGGTCAGTTTCGGCCC 28255 29 100.0 32 ............................. GAGGACCGCACCTGGTGACGGAACAGCCCGTA 28316 28 89.7 0 .....................G.A....- | TC [28339] Deletion [28344] ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CCAACAACCACTTCGACATCTCGCTGGCGATGTTCACCCAGGTCGGTGCCGCGGCCCCCGGCGACATCACCGCCCTGGACACGCACTGGATCTGGCAGGACGGCCAACGGCTCACCCAGGCTCCACCGCAGATCCGGGACGGCGCCGTGGCGGTGCCGGAGGTTCCCGGGCTGGGGGTGGAGCTGGACCGCGAGCGTCTGGACCAGGCGCACGAGCTGTACCTGAGGGAAGGGCTCGGTGCGCGGGACGATGCCGTGGCGATGCAGTTCCTGATCCCCGGGTGGGAGTTCGACCCGAAACGGCCGTGTATGGCGCGTTGAGGGGGCGGGTGCCGGCCGGGCCGGTGCCCGGTCTCCGGAGGGGGCCTGTTCTCCGGAGCAGGCCCCCGTCGTACTGGGTGCTGTGTCCGAGAGGCCTGTTGTCGTTGCCTGGGTGTGATCCGGAAGTGCACAGTTTGCAGATTTTCGGGTTGCTGGTGGGTAGACATGCAGGTCAGGAAG # Right flank : CATCCCGCCTTTGGACACCAGATCCGCGTAGACGACGACGTTGCTGCTGTATCCGTGCTCGTTCTGCTCGAACGTGCCGCCGCAGGTCACCAGCCGCAGCTCGGCGCGCCCTTCCGTGGACCCGTAGACCTTCCGGGTGGGGAAGTCGTCCTTGCTGTACTGCTCCACGCCGTACACCTCGAACACCGCATCGACACCGTCGGCGCGGGGGACCGTGACCTCGTCGCCGGGCTGCAGCTCCGCGAGACGGAAGAAGACCGCCGGCCCGGTCGGGGAGTCCACGTGCGCGCCGATCACCGACGCGCCCTGCTGGCCCGGCGAGGCCCCCGCCTCGTACCAGCCCACGGTGCCGGCTTCCTCGGGCACGTCCAGTTCCCCGTCGGAGCGCACCTGCAGCGGCAGGAGATGGCCGGCTTCCACGTCGATCGCGGGGATCCGCAGGCCCGCCGGGTCGGAAGGCTCCAGAGGGGGCGCGGGCGGTGCGGAGGGTTCGGCCGGCT # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //