Array 1 47290-46990 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSGP01000008.1 Corynebacterium hadale strain NML92-0415 NML92-0415__17416_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 47289 25 96.0 44 ......C.................. CCGTCGGGTGGAATCGCGACCTGGGGTTTCTCGCCGCGACGCAT 47220 25 96.0 44 ...................G..... GGTTCGCGCCAACTCGCGACCTGGGGTTTCTCGCCATGACGCGT 47151 25 100.0 43 ......................... CCGCCAGGCGGGATCACGACCTGGGGTTCTCATCGCGATGTTT 47083 25 100.0 44 ......................... CCATCGAGCGAGATCGCGACCTGGGGTTTTCCACACGCGCGGCG 47014 25 84.0 0 CA.................G....T | ========== ====== ====== ====== ========================= ============================================ ================== 5 25 95.2 44 TGCAAATGGCGCTAGCTCCATTTGG # Left flank : GACGCAAAGCGATCTCGAACACGGTGGTCAGCGGATCCGTCGTGCGGAGACGATCGAAGCTGCGCGGTGCAGTATTTCCTGGCGACCTATCCCGGTACACCACACCCAGCGGCCACTGCTTCCGAGACGGCGCCTTCCCTCGCTGTGCCACCAGCTCCACCGGTTCCGGCGTTGTGGCAATTACCCAGATACCGAGGAGACGCGCCGCCGATCTCCCGGACAACACGGCTTTCGGCACTGTGCAACCTACCGCGTAGGCAGCCAGCCACCGTTTCTCGTGATAGCGCAGCTGCTTCCATTCCGTCACGCTGATGAAAAATCGCGTCGAGACCTTGCGGTACCCCGCCGGACGCCTGCGGTATGCGAGCCAATCTTGTTCACGCTTCCTGTCCATGAGCTTGTTCGCCAGCTCCTGCTTCCTCCCCGAATCCATACTGTCGTTTCTATCAGATGTCGTCTGTTTCGTCTATCTGTCGGGGTTTCTTCTTCCATAACAGGGG # Right flank : CATCCGCACCTCCTCCCGCCTACGCTCACCTCATGCAAGCCCGCAAATACTACGCCGCCACGGCCTTCGTCTACCTCGCCACGCTGGCGTACATGCTGCTGCGTTGGGACTCCATCCCGGACCCAATCCCGGTGCATTTCGACATCGCGGGCAACCCCGACCGGTACACGCCAAAGACGTTTTTCGGCGCGACTGCATTGCTCTGGATCGGCGCGGTCATCTCGGCAGCAGTCGCCTGCTGCGTGCCGCCGCACGCCATGGTTCGTCGCAACACGGATGTACCGAGCACCTCCCCGGTCCCGTTTTCGGAGGCCAACGCGGCACGTGTCGAACTACTCACCGATAAGACGGCCACCTTCGTCTCCCAAACCATCTTCGGCATGGCGGTGTGCACGTGCCTGAGCGCGCTTTCGTCAGCCGGCCTCACGCCGTTCAACTGGCTGCTCCCCGCAGTCTGGATCGTGTTCACCATCGGCGTCGTGGTGCTCGCCATCGCGTTT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAAATGGCGCTAGCTCCATTTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 16260-24301 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSGP01000017.1 Corynebacterium hadale strain NML92-0415 NML92-0415__17416_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================= ================== 16260 29 72.4 19 T.CA....T..TG.T..T........... TAGTTTGGGCGTGAAAGTA Deletion [16308] 16308 29 75.9 57 A.T..........T.......T..G..TG CTGAAGAAGCTAAATGCTAGCATTGTGGACGGCTCCAATAACCGCTGGTCATCAAGT A,C [16311,16329] 16396 29 100.0 32 ............................. AGAAGTTCGAGGCACTTAAGGCGCTGTGCGCT 16457 29 100.0 32 ............................. GTTGCTCCACCCGGTGGCCGGGCGGCGATAGG 16518 29 96.6 32 ............................T TCAGTGAAGCGCTGGTACACCATGTTCCCGTC 16579 29 100.0 32 ............................. GTCTCCCCCGCAATGGTCTCAGCCTTCGACAC 16640 29 100.0 32 ............................. GACCTGCGGGAATTTTGCGTTTGTGCAGGGTG 16701 29 100.0 32 ............................. GCCCGATCCACATGGGTGCCGTCGCACAGGCG 16762 29 100.0 32 ............................. CGGCACCCGTGCAGCCTCACCCCTCGGGCCGG 16823 29 100.0 32 ............................. GGAGGACGCACGTTGTTCAGCAAGGACTTTCC 16884 29 100.0 32 ............................. GCCCGAGTCAGACCAGCTCACGTCGTGGTCGT 16945 29 96.6 32 ............................T GCGGGTGGAGCGGTCGCGCTTCGTCTCCGAAA 17006 29 100.0 32 ............................. GGCCCCTCAGCCGCTTTGCGCTGCACATCAAC 17067 29 100.0 32 ............................. CGGAATGTCATCCGCCGCAACCCAGCAAGAGA 17128 29 96.6 32 ............................G TTGCGGGTTTCGATCACCGCGTCAAAAAGCTG 17189 29 100.0 32 ............................. CTGGTCGCTGTCCGTTGCGAGGCTGAGTTCTC 17250 29 100.0 32 ............................. CTTGAGAAGAGCTTGGGCGGTTTGGTTTTGCC 17311 29 96.6 32 ............................G GCAACGGCGAAGGCGATGTCGGTGGCGATGAG 17372 29 100.0 32 ............................. CCCCCGGTTTTTGAGAGGAGAATGATGGTAGA 17433 29 100.0 32 ............................. GAACTGGATAGGCTTCGCAGTCTTCGCCTTGA 17494 29 96.6 32 ............................G CCCTTGATAAAGTCCGTGAACTGCTTGAACGT 17555 29 100.0 32 ............................. GTCGCCTCCCAGCCCTCGTCGGTGTCGGTACG 17616 29 100.0 32 ............................. TTCGGGCCGGTACCCGGCGTGGTGAAACGTGA 17677 29 100.0 32 ............................. ATTTCCGCTCGCCGGAGTCCATCGCCCCGCCG 17738 29 100.0 32 ............................. CGGGCGCTGGCGGATAATTCCCGTTCGATTGT 17799 29 100.0 32 ............................. CACCCGGCAGCGACTCAACGTTCGCCCCAACC 17860 29 100.0 32 ............................. AGACATTTAGGTCTCCTTAGCTCTTGAGGATG 17921 29 100.0 32 ............................. GTCTGGAAATCAATCTCACCCGCCGAGACCAT 17982 29 100.0 32 ............................. TGATTCCTCGGGGACAACACGATCCCGGTTTC 18043 29 100.0 32 ............................. AAAGCCACAGCCAACGTGGCCTTATCTGCTGG 18104 29 100.0 32 ............................. CTCAAATCCAATATCTCCGTAGATAAGGATTT 18165 29 96.6 32 ............................G GAGCACAGCAATGAGCAAGTGGATAGTGAAGA 18226 29 100.0 32 ............................. GAACTGCACCGGGGCCTTGGTCTTTTCCTTGA 18287 29 100.0 32 ............................. GCCTACGTCCGCGTCACCATTTGGGACACCGA 18348 29 100.0 32 ............................. GGTTATCCAGTTGATTTCACGGGTAGCCAGGG 18409 29 100.0 32 ............................. TAACCGGTGAACTTTGGCGGTTTTCCGGTGCC 18470 29 100.0 32 ............................. GTTGCTGACGTTCAGGCCAAGATTGAGGCCGG 18531 29 100.0 32 ............................. CTGGTGCTTGATCTGCAGGTCAACGTTTCGAC 18592 29 100.0 32 ............................. TACCACCAGCTTTTCAAACAGATGGCCGCTAC 18653 29 100.0 32 ............................. CTCGCGCGAAGTCCACATCCCCACGTCGTTCT 18714 29 100.0 32 ............................. CTCAGCCTGTCGGCCACGGGCGATACCCGTTG 18775 29 100.0 32 ............................. CAAGGACGCGGCACCCGCCGAAGCGAGAACCT 18836 29 100.0 32 ............................. TTGGGTTTGAGCTCGGGGTGGGCGTCCCAAAG 18897 29 100.0 32 ............................. ATCGCCGGCGTCGTTGTTCGAACGGCGCGCGG 18958 29 96.6 32 ............................G CGTTGCGCTTCGTCCATCAATGTGCGGTTGTA 19019 29 100.0 32 ............................. GTTGCCCGGTCCGACAACCCGAAAGGTCTGGT 19080 29 100.0 32 ............................. CCCTACAAACGCCTTCAAACGCCTGCAAAACG 19141 29 100.0 32 ............................. GCGAAGTACTTTCCCTGGTCGATGGTGAGCTT 19202 29 96.6 32 ............................G GCACCGAGATCGCCGACAATATCGACGACGCG 19263 29 96.6 32 ............................G GACCTCGCGGTCCTCGAGTACGCGGACGTCCA 19324 29 100.0 32 ............................. TTGACGGTTCTTCCGCACCAGCGGCACTGATC 19385 29 100.0 32 ............................. CAGGCTCAGGCTCAGCGGGGGAGGTGCCAATC 19446 29 100.0 32 ............................. TTGAGTTACACAAACACCGACAAGGAGCAACA 19507 29 100.0 32 ............................. CGTCGACCTACCGCGTCGTGGAGCAGCACTGG 19568 29 100.0 32 ............................. GCGCCAAGGTGGAGACTGCCGCGCTTGGTGTG 19629 29 96.6 32 ............................G GCGTTCACCGCAACGGTGCACAAGTACACCTC 19690 29 100.0 32 ............................. GCGCCGGGGTACTCAAGAATGACAGCCGTATC 19751 29 100.0 32 ............................. TTCAGCCCGGCTACGTGATCGTCGAGCCGTGG 19812 29 96.6 32 ............................G AAGTCGGCTTGCTGCGAAAAAAGGATGAGATT 19873 29 100.0 32 ............................. CAGTACCTCGTGCGAGACATGGTTGACGCCTA 19934 29 100.0 32 ............................. ACCCGGGCGAGGTGAGACTTCCACGACACCCG 19995 29 100.0 32 ............................. TGTGCACGGTGCTGCTGGCGGTGTGGATGATG 20056 29 96.6 32 ............................G GTTGGTGCCACGGTGGGGTTGAATGACCCGTC 20117 29 100.0 32 ............................. TGGCGCGTTGACGCGTGCTGCATCGTCGCAGG 20178 29 100.0 32 ............................. AACGAGTCCGCCCGTGAGCTGCACGAGCGACT 20239 29 96.6 32 ............................G CAGACCGACGGGGATGTTTTCTTCGAGAGGGA 20300 29 100.0 32 ............................. TGCGGCGGGCGGTCAAACAGCAGCGTCGCCGA 20361 29 100.0 32 ............................. GGGAACGTCTTAATCGTCACGTTGTACTTGGT 20422 29 100.0 32 ............................. GTCGCGAATTACCAGATCCGCTCCCAGTCCGG 20483 29 100.0 32 ............................. GAGCTTGGCATCTCCGCGTCCACGGTCACCGA 20544 29 96.6 32 ............................G CCTGCGACGACATCGACATCATCGACGACGAG 20605 29 100.0 32 ............................. GAGCTTGGCATCTCCGCGTCCACGGTCACCGA 20666 29 96.6 32 ............................G CCTGCGACGACATCGACATCATCGACGACGAG 20727 29 96.6 32 ............................A ACACAAGGCAACCGTTTCATCCGGCGAAACAG 20788 29 100.0 32 ............................. TCCACGACGAGGAGAACCCGCACTGGGTGAAA 20849 29 96.6 32 ............................T TGAATTCGGCTCAGGTGGGCGCTATGGCAGAC 20910 29 100.0 32 ............................. ACGGTGTTCACCGCGCCGGTCGCCTGCTCGAG 20971 29 100.0 32 ............................. GAATCCGAAACGTTCCGCAACGCTGTCAACCA 21032 29 96.6 32 ............................G TCGGCGGGGATGAAAGTTACAGCCATGGCCGA 21093 29 100.0 32 ............................. CCACCTTGTGGTGAAACCACTCTTTCGCGATC 21154 29 100.0 32 ............................. TCCGCGGGCCCGTCGCAGGACTGGCCGATCAC 21215 29 100.0 32 ............................. TCGTCCTCCGCTGGATCGACACCGAAGATGTG 21276 29 100.0 32 ............................. CCAATTCGCGCACGAATGAAACCACAGCACTA 21337 29 96.6 32 ............................T CGGCGGCGACGTCGGCGAACGCGCAACGTCTG 21398 29 100.0 32 ............................. TTTTTCGGATCGACGTCGAGCAGGTCGAGGAA 21459 29 100.0 32 ............................. CGTTTCTGACAGGCAGGACAGCAGCATGACCC 21520 29 100.0 32 ............................. TCGGCGATCTCCTCCGCATCATCAGCAAGGTA 21581 29 100.0 32 ............................. ATCACCGCAGCCACGGGGATAGACCGGCACAC 21642 29 100.0 32 ............................. TCGTCTACCGACAGGCCAAGGTCCATCAGCTT 21703 29 100.0 32 ............................. CAGCCCGAGCACCCAAAGTGGCTGCGCGAAAT 21764 29 93.1 32 .....T......................T CTCACCAGCGAAAAACTCCGGCCCCCAATCCG 21825 29 100.0 32 ............................. GTCCAGGCGTTCCCCACCGCGTCCTTGGCCGT 21886 29 100.0 32 ............................. GTCGCTGAGGATGGTGGCCTGGAGTCCATCGA 21947 29 100.0 32 ............................. CACACTGCCGTCCGAACGCCGTCCAGCCACAG 22008 29 100.0 32 ............................. GAGAAGGAACACGGCACCGACAACAGCGCCGC 22069 29 100.0 32 ............................. ACTGCGTAGTGTCACCTGCAGGTGACCAGGTT 22130 29 100.0 32 ............................. ATCTGGAACTGGCTGGATGAGAATGTTATCCA 22191 29 96.6 32 ............................G TCGAGCCCGGCGTGGAACGTGCCCCACCTGGG 22252 29 100.0 32 ............................. AGCGCCGACGGGTACGGCCCAGACCAGGAACT 22313 29 100.0 32 ............................. TCGGCGGGCGTAAGGACCTGGGCGTGTGGATC 22374 29 100.0 32 ............................. AACAGCCGCAGACAAGGTTCCAACAGCACCTG 22435 29 96.6 32 ............................G GCGGAGCGTGAGCGGCGGGCTGAGCTTGAGCA 22496 29 96.6 32 ............................T TGAATACTGCCTTGCTAGCTCAGATAGGTGAG 22557 29 100.0 32 ............................. CAATCAGGTTTATCCACCACACACCTCCGCAC 22618 29 96.6 32 ............................G GCAGGACCGCAGCATGACGACAGTGCAGAAAA 22679 29 100.0 32 ............................. CGCGTAAATCATTCCATTCTGAACGACGGTGA 22740 29 96.6 32 ............................G TTCGTTTCTTCCCAGGTGAGCTCCGGGAAGTC 22801 29 100.0 32 ............................. TGGCGATTGACATCCTCACCCTCGTGCGCGGA 22862 29 100.0 32 ............................. CTCGCGCGAAGTCCACATCCCCACGTCGTTCT 22923 29 100.0 32 ............................. ATCACCTCACCACAGCAGGCGCACACCTGCTC 22984 29 100.0 32 ............................. CACGCGCTAGCGGGGGAAACACTGACACTGGA 23045 29 100.0 32 ............................. GCCCCGCCGCCGAAGAAACCCATTCGTGTTGC 23106 29 100.0 32 ............................. GTCCTTGCCAACTACCGCTCGTATCTGCGCAA 23167 29 100.0 32 ............................. GAGTACATCATCTGGTCAACGGTGGTTGATCT 23228 29 100.0 32 ............................. GTTTGCAGCTCGTCTACATGGACGCGCTGGTA 23289 29 100.0 32 ............................. CATCACATCTCGCCGGACGGGAAATGCGGAAA 23350 29 100.0 32 ............................. ACACCAAGCACGGCGTTAATGCCGTGACGGAT 23411 29 96.6 32 ............................T GGCCAAGGTGACGCTGTCGAAGTTTTGGAGCC 23472 29 100.0 32 ............................. ACACCAAGCACGGCGTTAATGCCGTGACGGAT 23533 29 96.6 32 ............................T GGCCAAGGTGACGCTGTCGAAGTTTTGGAGCC 23594 29 100.0 32 ............................. ACTGACACCTGGGTCAAACCAGCACCCAACGG 23655 29 100.0 32 ............................. AAGTGGCAAGACAAGGAAGGCAACAATCGCTC 23716 29 100.0 32 ............................. GGGCTGATCGTCGAATACGTGCGGAGCCGGTC 23777 29 100.0 32 ............................. TCCACGACGAGGAGAACCCGCACTGGGTGAAA 23838 29 96.6 32 ............................G TGCCGCGAATTCGGGCACGGTGAGGACGAGCT 23899 29 96.6 32 ............................G CAGGCCGACATTAACGCCCGGCTTGCCGCTGA 23960 29 100.0 32 ............................. TGGGACGAAAGCGGGTGCGCCTCCTGCACGCC 24021 29 100.0 32 ............................. GAATCCGAAACGTTCCGCAACGCCGTCAACGA 24082 29 96.6 41 ............................G GTCGCGGTCTTGATCATCTGTCGGGCGTGTGCTGCGCCGTG 24152 29 100.0 32 ............................. AGCGCGGCGATCATGGGCTCGCAACTGCAAAA 24213 29 96.6 32 ............................A GATACCTGCTAGGGATACGGTTAAGCGAACAT 24274 28 72.4 0 ..........G..C...-....C.G.TTG | ========== ====== ====== ====== ============================= ========================================================= ================== 132 29 98.6 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : GGGGTTCTGCTCAATCTGGGTTTGGAACGGGCGGGTGGCCTTTCCAATGTCGTGTAGCCCTGCGAGCCAAACATAGAGGTTGCGTAGTTGTTCAGTGGAGAGCCCGAGGTTCGTCGACAGTTTGCACTTCATCTGATCGGACACCCATGAGTCGAAGATGGAAGCTGCGACGCAAGCAGTGTCTGCTAAATGCTGGGGGAGTGACAGCGACCCCGATTCGTCACCGGATTTCGCCCAGAGTGCCCGTGATTGTGGGCTTAGCGAGATGAGCCACAGATCGAACGCGTGGGCGAGGTCGCGTGCGAAGGGGGATACGCGATGTCGGTCGTCCATGGTTAGCTCTCCAGTGAAGGGTTGAAACTGCTTGATTAATGTCTGTGTATGAAGTGTAGCGCACTTCATTAGTTTTCACACTTTCAAACCCGAACTAGTTTGAAGTATGGGGCCGGTTATTACGTCTCAGTCTTTTGAGCAGGGCTCTCAGTCGGGATAGATTTGTT # Right flank : GCGGTGCAGCGGATCCCCGGGGAACCCGCAGCGAGGTCCGCACCCCAGTGCAGCTTGCTCCTGCGCCACCCCCGTCATCCAGCCGTGCCACAATGTGCATATGCACATCTACTTCTCCTCCGTCTACGGTTCCACGAAGCAGTATGCCGAGGAGCTCGCGCGTCGCCTCAGCACGACCGTGCAGGAGATACTCAACCACGCTGAAGTGCCCGACACGGCAGCAGAGGGCCCCATCATCGTCCTGGCCCCAGCGCACGGCCCGATGAACGCGGCGGCCAAGTTCGTAAAGTCGCTCCCGGAAACAACGATCCAGGCCAGCCCCACCTGTGTGGTCACGGTCGGCATGACGCTAGACCATGTAGTCAGAGAGGCAGACCCCACGGCGGAACTGCTCGGCGACCGGGCGGACCAGGTACAGCGCTTCTACCTGCCCGGCCGCCTGAACTACTCCGAACTCACCGCGGCCCACGCGGGAGTGATGCGCGGGATCATTGGCGCGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //