Array 1 7141-7397 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWQQ01000030.1 Desulfotomaculum profundi strain Bs107 Contig_255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 7141 29 100.0 45 ............................. ACACGCCAAAACGCCGCTAGCAATGGTGGCATTGGTCAAGTTTCA 7215 29 100.0 50 ............................. ACTAATCACCGTCGACTTGTCCGTCGAAAAGGACAGGGCGGTTGGTTTCA 7294 29 100.0 46 ............................. ACGRTWCATGTTTATTCATATCAAAGAAAATATATTCAGTGTTTCA 7369 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================== ================== 4 29 100.0 47 ATTCCCAGAGGGAATTATTTTGTTTTTGG # Left flank : TCGACAGCATGGTACCGTGCGGCAAACTCGCAAATATTTCCGGGCAGCCCCTGCTGGGACAGCCAATGATAACCGTGCTCCTGGTGAGTCATGGATTGCCCGTCATGGCAGCCTCGCTGAATAAACTTGCCAATATCATGCAATAACGCCCCTTTTACAACATCTAATAGGTTCAAAGCGATCACCTCCCGGCTGTTGATGAAAATATCAGTTAATTGGCAAAAAATTCTTATACAAATTTTCGTCATAACCAATGTTTTTCCTGCACTTACTTTATTTATTTTGCGGAAATATATTGTAGATATTTGTCGTTTTATATCAATAAACTTATAGATTTCTGCTTTTTGGCGCAAGAAGATACTTTTTGGCAGCAGATGCAAGTTTTTTTAACATGTTTGAAATATGCCCCCGGTTTGTTCTTTCACATTCTACAAAGATTTTACCGGAGAATAATTTCAAAAAATAAAAAACCGCTTTTTATTTTAGTAAGCGGTTTGGTC # Right flank : | # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCAGAGGGAATTATTTTGTTTTTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 569-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWQQ01000049.1 Desulfotomaculum profundi strain Bs107 Contig_302, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 568 37 100.0 38 ..................................... TTTTTCTTAATCTGGTAGAGGGCTGTATGGCAACTTTT 493 37 100.0 38 ..................................... AGCACCCAAACCCCGCCCGGCCTCTCAAGGGAAATAAT 418 37 100.0 39 ..................................... GTCCCAATCTTGCTGACCAACTACGAGCGGGTGCGTGAT 342 37 100.0 37 ..................................... TGCGTTATCACCGTCCAATGCGGCCAGTGCCTGTCTG 268 37 100.0 40 ..................................... TTCCCACGATGGGGATGACAGGGCGGTATTGAATTCGTAG 191 37 100.0 37 ..................................... AATTCACGGGCGTGGCTGGCACAGTGGTGCCAAGCGG 117 37 100.0 39 ..................................... CATAACAATCATCCCTGAAAGGCTCCGGATCTTCCACAT 41 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 100.0 38 GTCCAAAAACAAAATAATTCCCTCTGGGAATTGAAAC # Left flank : ACCATTTTTAATCCGGTAGTGATGATGACGCATTACATTATTAGCTATGATATAACAGATGACAAGAGACGAAATAAAATACACAAGGTATTATGCGACTATGCGGTACCAGTTCAGTACAGTGTTTTTGAAGCACGTCTGAGCGAGGAAGATTATGTTATGCTGCGGCATAAATTATCTCGTCTCCTGCAAAAAGACGAAGACAGCGTCATTTTTTACAAGCAGTGTGCCAGGTGCAGAGATGATATAATAAGAATAGGCAAATGCAGCGACCCCTTTGGAGATGGAGTATATATTGTATGAATATTCAAACATCGAGCACCTGCCGGTGTGTCAAAAACCCGGGGGTTGCTCGATTTTTAAAAACCCTTGAAATATAAGGGATAAGGGGTTTACGGGTATAAAGATATAGTGTAAAATAGGAAAAAGTAACCAGATTTATGGTGATTCTCGCAAAATAGGTTGTCAGCCCATGTATTTTAAGAGCTCCAGCGGATAGG # Right flank : CTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAAAACAAAATAATTCCCTCTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 2 4101-2772 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWQQ01000049.1 Desulfotomaculum profundi strain Bs107 Contig_302, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 4100 37 100.0 38 ..................................... AAGTAGCCGACAGCGGCCGCACCAGCTCCAGCCCGGCC 4025 37 100.0 38 ..................................... TCCATCAGGTCAAACTCAGTGTCGGCGGTAATCAGTCC 3950 37 100.0 38 ..................................... GCCACGGAAACATATCCTTCATCTATGGCCCTGGATGA 3875 37 100.0 37 ..................................... GCGCCCGCAGCTGTTTGGCAGATGAGCCGCCAATCTC 3801 37 100.0 43 ..................................... TCGACCAGCTCGTCGTTGTCATCTGCGAGAACCTGATCGGCGT 3721 37 100.0 37 ..................................... CCGGAAATGTCTCCGGCTGATGTGTACCTGTGGTTCG 3647 37 100.0 37 ..................................... ATTGCCCCTCCGCCGGCCATTAGTATCTGGTCAATCA 3573 37 100.0 40 ..................................... ATCACCAGCAGGTGTTCTAGTTCTAAGTCGATACTTCTTT 3496 37 100.0 40 ..................................... ATGGCTGCCACCCTGTTTTTGGCTTTACTGCTCAGCCACA 3419 37 100.0 40 ..................................... TACCCATGTGGACACACAAGTATCCACCTTGATTCGCCCA 3342 37 100.0 38 ..................................... CCCAGATGACCGGGACGGGGTTGTCGTACTTGTGGTCT 3267 37 100.0 38 ..................................... TCAGTTAGTTGTCGTTCTGGTGGTGGAACTGCTTTTAC 3192 37 100.0 44 ..................................... ATGGCCACCTCCTTTCCTAATTTTCTTCTGATTCGGGCACCAAT 3111 37 97.3 40 ...C................................. ACCAACGCCGAACGGTTTTCTCGCTGGACGGGTCCGGGAT 3034 37 97.3 37 ...C................................. ATCTCTTTTGGCCCATTTCATATTTCCTCCTTCTCCC 2960 37 97.3 40 ...C................................. CCTTCATAGACTACATCAGCGTTAATGTATTTATACTGGC 2883 37 97.3 38 ...C................................. GCCAACGGCGCTAGAATTAGCACGTTGCCCCCTGTTTT 2808 37 97.3 0 ...C................................. | ========== ====== ====== ====== ===================================== ============================================ ================== 18 37 99.2 39 GTCTAAAAACAAAATAATTCCCTCTGGGAATTGAAAC # Left flank : TGGCATTCTATTGCACTAATATCTGTATATGGCAACTACTTAAACTATATCAATAAATAGGCTTAGTCAGTCCGTCAGTCCCGATAAAAAAGCCAGTCCCCCAAGTGGGTAACTGGCCGGAAACCTACATGTCTCTCAAGTAACTTGTGCTAAGTTGACCACTTGTGATAGAGTAAAAGTTGACCGGCCCCTGTTATACAATGGTAAACTGACAGATAATTCTGCTTATACATAACCCTAGTAGCGTGATTCGCTACAGGCAAATGCAGCGACCCCTTTGGAGATGGAGTATATGTTGCATGAATATTCAAACATCGAACACCTGCCGGTGTGTCAAAAACCCGGGGGTTGCTCGATTTTTAAAAACCCTTGAAATATAAGGGGTAAGGGGTTTACGGGTATAAAGAGATAGTGTAAAATAGGAAAAAGTAACCAGATTTATGGTGATTCTCGCAAAATAGGTTGTCAGCCCATGTATTTTAAGAACTCCAGCGGATAGG # Right flank : TAATTTATCTTGAGCATTATCATATTTAATGTTGTAATTATTTAATATTCAAATATACCGCTACACTGCATCATAAGGTGTGTGAGACCATGCAAGGACAGAAATTAACCAGGGAGCAGCAGTATCTTCCTGTATCTGCGGTTTCGGAAATTCTTTATTGCCCCCGAAATTTTTATTACAGGGTAGTTGAAGCGGCAGAAGACTCAAATCACCATCTGCTGGAGGGTAAGCTGCAGGAGGAGCGGCGAAATGAAAGGCAGAGTATCGTGAGGGAAGGATACCGCCAGGAACGTTGCATTTGTGTTGCATCGGAAAAGCTAGGCATTATAGGTGTTATTGACGTCCTGGAGCAGGGGAATGAAATCTATCCGGTCGAATACAAAAAAGGTATCCTGAAGGAAAGCCTGAATGATGATATACAGGTATGTGCCCAAGCTATGGCTCTGGAAGAAAAACTGGGACATGATATCACCAAGGGTATATTTACTATTCCCAGTCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAAACAAAATAATTCCCTCTGGGAATTGAAAC # Alternate repeat : GTCCAAAAACAAAATAATTCCCTCTGGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 4563-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWQQ01000017.1 Desulfotomaculum profundi strain Bs107 Contig_212, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4562 30 100.0 34 .............................. TTTTTCGGGATAACTTGGTCATACTTTGGCTTAA 4498 30 100.0 36 .............................. AGAGAAACGTCCTGACTTCCCCGAAGTGATTTCCGC 4432 30 100.0 36 .............................. TTTTTAATCACCTGCCTTTATTACGCATTCTTTAGC 4366 30 100.0 37 .............................. TTCATCGGCGACGGCAAACTCACACATAGCTGTGTAG 4299 30 100.0 35 .............................. ACCCTTTCTTTTCAGCACCTCAACAGCCTGCTTGA 4234 30 100.0 35 .............................. CGGTAGCCGCCACCCAGCTAGTTGACGCAGGCAGA 4169 30 100.0 37 .............................. CCATAGATCAGTTTCAGGGCTTCAATCTTCCGGTTTT 4102 30 100.0 36 .............................. CGATATTGAGACTTTTTCCTCCGTCGACATCACAAA 4036 30 100.0 37 .............................. CTCGATTGGCGAGTAAAAGAACTTGTTGAGGCAGTAC 3969 30 100.0 37 .............................. TCCCTGGTACCGCTGCATTGCTCTGGCAGGTTACCAC 3902 30 100.0 38 .............................. TTTTAGCTACGCCTCAAATGGCGTAGTTGACTTAAAAT 3834 30 100.0 39 .............................. TTTTTGATAGCGTTCCATATTCCGGATAAATCAGGTCCA 3765 30 100.0 36 .............................. AAATACTTAGAACCTGAAAGATAACAACAAAAAAAT 3699 30 100.0 36 .............................. CTAGGTAATCTACCAACAACTATTCCCTCATTAATA 3633 30 100.0 35 .............................. CTATTCAGGTAGCATCTGGAACTTATACTCACACA 3568 30 100.0 36 .............................. AATCTGATCAAACAATTTTTCATATTTTTGATATGC 3502 30 100.0 36 .............................. TGTTGCAAGTTCCAGTGGCATTGCGGTTGGAGATTA 3435 30 100.0 36 .............................. CGTTATAGTCAAAGACACTACAGGCACAGGTGACCA 3369 30 100.0 36 .............................. ATATGGCAAGCAATGATAGTAGTATGTACGCAAAAC 3303 30 100.0 37 .............................. CAGTGGTGGCAGCCACAGCGGTTAACATTAATGTTTC 3236 30 100.0 38 .............................. TTTTTTCTGGAGAAGTTTTTCACGTGAAATAATCGCCC 3168 30 100.0 36 .............................. ATATTTGCGTATCCCTCAATGTCATACTGCAGGTCA 3102 30 100.0 35 .............................. TGGCTGATAAAAATTCAAAAAGGACTGCGTCGCGC 3037 30 100.0 35 .............................. TGAGGAGGTGATAAAGTGATCTACCATGATTCTCT 2972 30 100.0 35 .............................. TGCCGTGTTCAGCGGCCCTGGCCGCCAGCCACTCG 2907 30 100.0 38 .............................. TAAAATTCGCCCATCTTTGGTCACCAGATAGTTCGAAC 2839 30 100.0 36 .............................. CGACTGCTGCTAGTACTTTGAAGTCAAGGTCATTTA 2773 30 100.0 37 .............................. CCCGCCGGTCCAGGGCCGTGAGCGTGGTCAACTCGGC 2706 30 100.0 35 .............................. ATTTCCCTTTGGCTTCAAAATTAATCATGTATGCG 2641 30 100.0 36 .............................. CATCACCGCCCCGGCAATTAATACTACCTATTATCT 2575 30 100.0 37 .............................. TACTTGGAAGCAATGTTGGCGTAAATGGCTTCGGTGC 2508 29 96.7 37 .........-.................... TTGCTGGCAAAAAGTCACTGTCACCAGTTATAATAGC 2442 30 100.0 39 .............................. AATGTTCGCAATGCCGCTTCAATGAGGCCCTTGACTTCA 2373 30 100.0 38 .............................. TGTTCTCATTAAGGGCCAAATAGAGCAACACGGCAAAA 2304 30 100.0 37 .............................. CCAACAGTATCTATAGCAGGCGAGAAAGTAGGTGTTC 2237 29 96.7 34 .........-.................... TGCTACGTCACTTTCCCCCAATATTCCCCACCTC 2173 30 100.0 35 .............................. AACATTTACTTTTCCTCCTTTTCATCGATGGCTTC 2108 30 100.0 38 .............................. AATAAATACACCGTCATTGAAACGACGTACAAAGATGA 2040 30 100.0 35 .............................. ACCTTCTCGCTGATTGTGCGGCATCAACAGAGGCA 1975 30 100.0 38 .............................. TTGAGATCACCAAGGTAAGTCTGCTCTAACTCTGCTGC 1907 30 100.0 35 .............................. CCGTTGGAAGGTGCTCGCACGGTGAGTATTCTGTA 1842 30 100.0 36 .............................. TCCTCCTTTTCTTTGATGGCCTCGGCAATTTTCTGC 1776 30 100.0 37 .............................. TGCAACCGACATTGCCAATAGCGGGGCTAGCCAGAAA 1709 30 100.0 39 .............................. ACGGTGGAAAGCCACAGCCGCCGGCGGCCAGGGTGATTG 1640 30 100.0 39 .............................. TTCGGAATGATGTCTTTTGGATGCGGGTTCGATATTGTA 1571 30 100.0 37 .............................. TGGCCTCATTGATATCGTGAATATCCTCCATGATGGA 1503 30 100.0 35 .............................. TGGCCTGGGATTTGCACCAGGCGAAGAATTTTTGC 1437 30 100.0 37 .............................. ACTATTCATGGAAGCCGGCGGTTCAACCGGCAACCTG 1370 30 100.0 35 .............................. TCAAACGTATCAAGTATAGCCGCTGTAACTTCATT 1305 30 100.0 36 .............................. CAATAACTCTATTAAACACTTCTTAAACGACATAAT 1239 30 100.0 35 .............................. TTCATAACCGCCCTTAAATACGTCACGGAAGTTAC 1174 30 100.0 39 .............................. CTCAATATAAGCCTTTCCTCCTTGGTGATAGGCGGCCTC 1105 30 100.0 38 .............................. CAGTTGCCGCATTTTGCTTCGTGCATCATATTTTCTAC 1037 30 100.0 37 .............................. TCAGACAGTTTCGCTGGGATGAATATATGCGTCTCCG 970 30 100.0 36 .............................. TACGGTGTCAGATACTCCCGCAATGCCCTCCAGCCT 904 30 100.0 37 .............................. AATATCCACTGCCACCAGGGAAACGATTCTACACCAA 837 30 100.0 36 .............................. CCGTACTGGAGGATCAGCAACTGACGATACGGCGGC 771 30 100.0 36 .............................. GCTACAAACGAAGAATATGACCCTGCAACAAACACA 705 30 100.0 36 .............................. TCCTTTATGCCAAAGAACTGTTGAACCGGTCAAAAA 639 30 100.0 35 .............................. GTTAGTGGAAATAACATATATTTTGTTGCTATAAC 574 30 100.0 38 .............................. ATCGATGCCGTAAGTGCATTAACTAAATGGGGTATTAA 506 30 100.0 37 .............................. CCAGAATTTGGCCCAATGGATGGTAGAGTTTGGGTTA 439 30 100.0 36 .............................. TCCGGGTACAGGTTCATAATGTACTCAACCTGTTTC 373 30 100.0 37 .............................. CCGTATGCACTACGAAAGATATAGCGGTATGCTCCAC 306 30 100.0 37 .............................. TTCTGCGGAGGTGAGGCGGTTGGGAGACGTGGCAGAA 239 30 100.0 36 .............................. CCCCATAGTGCCAAGTGTCCCATCATTGTTTCCCGC 173 30 100.0 35 .............................. CCCCTAGTATCTGATGACTGAATATTGGCATTCTA 108 30 100.0 36 .............................. TTGGATATTGAGGGGTAGGAAGAAATGGCAAAAAAG 42 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 69 30 99.9 36 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : TATTCTAAAAACTAGACATAGGGCACGTTAAGAAAAATGGAAAGAACTAGAAGGTGGTGAGCCTTAACTGTTTGTAATCCTGGTATATGATGTCAATCAGAAAAGAGTGGCAAAGGTCCTGAAAAAATGCCGCCAGTACCTTAACTGGGTTCAGAACTCGGTTCTTGAGGGTGAGATTTCAGAGGCTAACTTAAAAAAATTGAAAATGGAGCTTGAACGGATAATCCGGCAAGATGAGGACTCGGTGATATTTTACTACCTGCGTACAACAAAATATTCGTCCAGGGAAATAATAGGGTTGAAAAAAGGCGGGTATGAAAATATAATTTAAAAAAATGACGAGTGGTTGTCGTCGATCTCCGGTAGCGTAAAAGTTCCCGGGGATCGACGACAACCTGAAAACAAAAAATCCTTGCGGCATATGGATTTTCAATATTGCTAACACCAAATACCCGGTTAGGCCTGTAAATGAAAACCTTATTTTTTGGGCACTCTGACGG # Right flank : CTGGCTGAGCTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3343-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWQQ01000052.1 Desulfotomaculum profundi strain Bs107 Contig_308, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3342 29 96.7 39 .........-.................... TGGCTGAGCTGAAAAAGATTTATCCGAAAGCCAAGGTGG 3274 30 100.0 36 .............................. TCGGTCTGCAGGATTGGATTTGCTTTTATCCAACAT 3208 30 100.0 35 .............................. CTAAAATTAATTATTTGAATGTATTTACAGCCCTC 3143 30 100.0 38 .............................. TCCAGTCAGCCAGTTTCCACTTTGCTCCAGGATATTTC 3075 30 100.0 37 .............................. TTTCCAAAAGTATTAGAATATGACCGAGGAGTTGATA 3008 30 100.0 37 .............................. GTTCACCTCCCCGTCCATATAATGAACATCCACACAC 2941 30 100.0 37 .............................. CGCTCCTGGCCGATGCGGTGGCATCGGTCCTCAGCCT 2874 30 100.0 38 .............................. TACAGAGCGGCCTCAATTTCCTGGCCAGCCTGCTCATC 2806 30 100.0 36 .............................. TTGAAAAAATAGAGGCTGGGGATTACTCAGACGTAA 2740 30 100.0 37 .............................. ACACCTGCTACTGTAGTGGACCATATCATCCCGCATA 2673 30 100.0 37 .............................. AGGATTAATTGCCGGCACTGTTGTTTAGCCACATATC 2606 30 100.0 36 .............................. CTGTCCGGTTAGCCAAGGCCCTGGCCGAGTTGGACG 2540 30 100.0 36 .............................. CCGGCAGGGACGCTGATAGTCGCCGAACCAGTGCCG 2474 30 100.0 39 .............................. TTAGAAGCACAGCTTGAACCTGGGCATAGGCTTGAAGCC 2405 30 100.0 35 .............................. CTCTTATGCAGCCGGTCATGGCATGCACGTCACAC 2340 30 100.0 35 .............................. ATATATGGAGGTGAGCAGTTTGCCACAGGTAGTAA 2275 30 100.0 36 .............................. AGGCTAACCGGGCAGAAGTAAACTACCTTGTCTATT 2209 30 100.0 37 .............................. CCGAAAAACGCGAAAAAGGTAAAAAAATTTTACCTCC 2142 30 100.0 35 .............................. ATTATACCTCCTCTCTAAATTCATCCGCCACGCCC 2077 30 100.0 35 .............................. ATGTGTAATTACAACCGTTTTTGGCTAATTTTTCA 2012 30 100.0 36 .............................. CCAATCATCACTGAGACGAAAATAGACCTCGTAAGC 1946 30 100.0 36 .............................. TCGGTACTTAAACCTGCTTCCGACCATAATTAGCAC 1880 30 100.0 37 .............................. ATTTCGGAGGCGAAGCAAAAGAAAGAATGACAGAACT 1813 30 100.0 37 .............................. CTCCAAAATGGCCTTTGTTGGCCTATCTGATAGCTTT 1746 30 100.0 36 .............................. TTCTCATTCAAGAGTTGGATGAAGAGGATGACATTC 1680 30 100.0 35 .............................. GACAGTGCCCAGGTTAGCACCGGGTTGCCGTCGTG 1615 30 100.0 36 .............................. TCGGTGCGGCGTGCTCGATGGCCGGGAATGGTATTT 1549 30 100.0 38 .............................. TTCCTCGTTTCCCCGATCATAGAGTAGGCGGGGAACGG 1481 30 100.0 36 .............................. CTTGGTGGTTGGTAAGTTCATGCAGTGGATACTAAC 1415 30 100.0 38 .............................. ATCGTTGGCTAGTTGAGCATGGAATGCCTGAGATACAG 1347 30 100.0 35 .............................. ACGAGTTTGTTGAGCAGTTAGCCCTGGATCTGCCA 1282 30 100.0 36 .............................. TTAGGTAACCAAAACCTTTTACATGCATCGGAATGC 1216 30 100.0 38 .............................. TCCAGCATGATGTTTTCGTTGTGATCGGCTTTGGTTAC 1148 30 100.0 38 .............................. ACTGATGCCCGTTCACCCCGTCACTCAGTACGCCATGG 1080 30 100.0 35 .............................. CTCATAATATCCCTCCAGGATTAAAGTTTAGGGCG 1015 30 100.0 39 .............................. CTTCGGTCAGGTCGGGGTGGACTTCTGCGGTGACGGTGA 946 30 100.0 35 .............................. CTGGCCAGCACTCCAGAGGGAATGGCTTATTTACA 881 30 100.0 37 .............................. ATGGACAGCACGGGGCGGCCATTACTGCAGCCCGACC 814 30 100.0 37 .............................. TTTGATTCAGACGTGCCAAAATTTTCTCTATTCCTTC 747 30 100.0 36 .............................. TCGAGGGTGCGAAGTGGGGTCTGATGTTTTCCCTCC 681 30 100.0 37 .............................. ATTTTATGGCAGTTTTAACGGTTCAGGACGTAATTGC 614 30 100.0 36 .............................. TTCTAAAGTGGTATTACTTATGTCCATTTCCTTTCT 548 30 100.0 37 .............................. TGAGACTAATCGACGGGTAACAATAATCGTCACTACC 481 30 100.0 37 .............................. AGCACATGTCCCGTGGCGGCCACCTTAAGCCATTGTC 414 30 100.0 38 .............................. GCTGATTGACCTGCTCAACCAATTCCGGCCGCTGTGCG 346 30 100.0 35 .............................. AAAATTAAGAGGACATATATTGAGCACATGTCCCG 281 30 100.0 35 .............................. CAAGACTTCTCTAGGGCTACGTTTTCCAATGTGGA 216 30 100.0 37 .............................. CGTCAAGATATATCGAAATACGCTCCACCCTCGCCAA 149 30 100.0 36 .............................. TTGAGTACAGCGGACGCTTTCTGTCCGGCACGCCCA 83 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 50 30 99.9 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : | # Right flank : CACGTAGTATTCACGTCCGGGCATGTTGTCAGTCTGCGTTTTTAGCCTACCTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 57-2815 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWQQ01000050.1 Desulfotomaculum profundi strain Bs107 Contig_303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 57 30 100.0 35 .............................. CCGGGAAGCAAAGAGGCAAGGAAGATGACCGTTAC 122 30 100.0 36 .............................. GTGCATGGCGCACCTCCTTTTTACCAGACGCTTCAA 188 30 100.0 36 .............................. CCATACACAAGGTCTCTTTCCTTGGCAAGGCTTTCT 254 30 100.0 35 .............................. CCGTCAAAGGTAAGGCTGGTCACGGTCACGTCAGC 319 30 100.0 36 .............................. TTAGGTACTTAGAAGGGATTTTGCTTTCATCGTTGA 385 30 100.0 35 .............................. CCGCGTGTTGAGGTGGCTTTAGATGAGAGTGGGCG 450 30 100.0 36 .............................. TCTGACACATCCTCAACTTTGTGATCGTCATGCACC 516 30 100.0 38 .............................. TCCATCTGTGTCTGTCTCCGCAGTTCGTGCTGGTATGC 584 30 100.0 36 .............................. CTTCTAGTACGGCACGCTCTGGGTGCGAGTCGTGCC 650 30 100.0 38 .............................. TTGGTGCTCGGTAGTGTGCGAAAATGATTGCTCACTTC 718 30 100.0 38 .............................. CCAGCCCCGATATGTGGGCCAGGAGGGGCGTGGCAAGA 786 30 100.0 35 .............................. TCTATAACTTCTTCGCTTTCTTCGCTGTTGTAGCA 851 30 100.0 38 .............................. TGCTGTCAAGAATCTTGTCCCGGGTGTCCGGGTCATTC 919 30 100.0 35 .............................. TCCATGCGATGCCGCAGGTTTCGGCTTCCGGCACC 984 30 100.0 36 .............................. GAAAAAGTCCTCCAGCTTTCTAACTGCGATCTGGCC 1050 30 100.0 36 .............................. ATATCCATCATGTTCGTGTCCCTCCTAAATGATGTA 1116 30 100.0 35 .............................. TTATGAGCAATATAGTTGACACGAGGTGCGTAATT 1181 30 100.0 38 .............................. TTGACATGAAAAACGGTACGGAGTTTAAGGTTTTCAAA 1249 30 100.0 37 .............................. TTCATTATACATGGGAGGCGGCAGTAATAGAAGGGAT 1316 30 100.0 35 .............................. ATTACCCTCCTGTGTAATTTATCGCTCACTGTCGA 1381 30 100.0 37 .............................. TGCTTTGATTTTCACCAGCCGCAAACCGGAGGCTAAA 1448 30 100.0 36 .............................. AAGGGTACATCAGTCACCTCCGTTACTGCACAATGG 1514 30 100.0 37 .............................. ACAAAAGTTTTTCCGGGCTGTTTCTATTGCTTTCGGA 1581 30 100.0 35 .............................. ACTATAAGATAATTCCGAAGAAAATGGTAATATTA 1646 30 100.0 38 .............................. GACGTTGCAATCGTCTCAACTGCCCCAGGATAGATGAT 1714 30 100.0 35 .............................. TAGAGGGCTATGAAGGGCTTGGATTTAGGACACTC 1779 30 100.0 39 .............................. CTACCAATGCCACTTTTTAAATGTGACAACCTTTTAACA 1848 30 100.0 39 .............................. TATTTTTCTTGCCAACCATCATTAAGGAATATTTTTAGT 1917 30 100.0 38 .............................. GGCCATGCAATAGGCTACTTCTTTGGTTACCGGGCCGG 1985 30 100.0 39 .............................. CTTATGTCCATTTTCCTTCTCCTTTTTATCAGCACTCGA 2054 30 100.0 39 .............................. CTCGGTGCAGCACTCCCCGGCGTTTGTTCAAAATTACTG 2123 30 100.0 36 .............................. ACGCTTTGGCTTTGTCAATAGAGATCACTTCGCAAC 2189 30 100.0 36 .............................. TCGCATCTCTCGGGCCGGTGGCCTGCTCATATCCGC 2255 30 100.0 39 .............................. CATGAAATATAATGCATGAAGGAGGTGAAATGAAAAAAT 2324 30 100.0 38 .............................. TGGTCAAATCCAGGGGACGTTGTTTTCTCGCCGTTCAT 2392 30 100.0 35 .............................. CTTCTAGTACGGCACGCTCTGGGTACGAGTCGTGC 2457 30 100.0 36 .............................. TTTTATACAAACAATTTTCATATAAATACTTAAACT 2523 30 100.0 35 .............................. ACTGTATTCTGAGTGCTGTTATGTCCGGTGTATCT 2588 30 100.0 35 .............................. TACCATATCGCTTACAACTGATTGGACTTATGACG 2653 30 100.0 36 .............................. TGTCTGTCGTATGAAAAATCGAATTTAAATCTATTT 2719 30 100.0 37 .............................. GACATGTATGCCCCTACATTGTCGCAATCCTCTACTG 2786 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 42 30 100.0 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : CTATGAGGAATTGAAACTTTGAGTGTGTATCAAATTGGTTAGGCGAATCATTAACCG # Right flank : CTGCGTCTTACTGAACCTACCCCGAATCAATAGACACTAAAAACGCACAATATCTAACTGTCTCACAAAATTGCTTAATTATATAATATTTAGTATGTTATGTTAAGGTGAAGGTGGGTTTTTAATTCGCCGGAGTACCACCCCTTGATATATGATCATGGTCGTTTATCGGAGCGATAGCGGAGACCCTTGACATGGAGAATGCCCGTGTTAGCCTTTCATGGCAAGGGGCACTAAGCGAAGCTGGGTTGCCCTTGGCCCTTGGAAACACGGGTGCGAGGCTCCATGTCAAGGGCGACCAAGGGTTAGTTTATGCACCAACATTTAGCGATCACGCTGCCTTTATAACTTCCATCGGTGTTTTGTAACAGTTGCTAGAATGTATGCGCCGTCGGTTGTAAAAGACTTCGATATATTCAAATATGGCTGCCTTGGCTTCGGCCCGCGTCTTAAACCGCTTACCGTACAACCACTCTTGTTTGAGCTTGCCCCAGAATGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 4379-6804 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWQQ01000050.1 Desulfotomaculum profundi strain Bs107 Contig_303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4379 30 100.0 36 .............................. AAATTTGGCGTAGCTACATTACCTGCTACTTCTCCT 4445 30 100.0 36 .............................. TCGAGCATTTCCGCTATGAGCGGTACATAGAGGACG 4511 30 100.0 39 .............................. TCCAGTATCAGTACGGCAAATGCCACGGCATTGCTCTTG 4580 30 100.0 35 .............................. AAGGTGGTATAAAAATAACTTTGCACTTTTTTTGC 4645 30 100.0 35 .............................. CTGCAAAAATGCTGGTATAGGATAACCTTCAATCA 4710 30 100.0 37 .............................. GAGTATAATCCAGGTTGTTTAGCGCCTTTAGATCCCC 4777 30 100.0 38 .............................. AACTCCGCGTCAGCTCGCCCCCATGTCGCTTGTGCCTC 4845 30 100.0 36 .............................. CCAAGGTATACCCAAACAATTTCAAGGGTGACAGGT 4911 30 100.0 37 .............................. CGCATCTGCATGCGCCGGTGATATGCTTCATCGATGA 4978 30 100.0 36 .............................. ACCTCCGAGATTGGCCTTTTCTTTTTCAATCTCAAG 5044 30 100.0 37 .............................. GAAGTTTGGAATATAAATTAAAATTTCAACAACGAAA 5111 30 100.0 36 .............................. TCATTCATTCGATGATGATATTCCAGAAAGTCTTAA 5177 30 100.0 36 .............................. ACGACATATTTCAGGCTCCTGATGGTGGCGAATAGG 5243 30 100.0 37 .............................. CTCTTCAGCTGAATCCGATCCGATGAAGCGGTTTTGG 5310 30 100.0 37 .............................. TAATCCTTTACAAACTGCCTTTTAGTTTGTCGATCCC 5377 30 100.0 35 .............................. AGGGGTCGTGTCGCCAGCTCCAAGGAGATAACTCA 5442 30 100.0 37 .............................. CTGCGAGATGTGCCTACCGCCGCCGGGAAAGAGATGC 5509 30 100.0 35 .............................. GAGGTTGTTTAAATGAAGAAGATTGCTGTCTTTGA 5574 30 100.0 39 .............................. CTGTTGGCGGTACCATCGGCATGAAAAATTCAGTTCGCA 5643 30 100.0 39 .............................. TCAGAGCCAACAAAGGACTTCCGGGAGCGTGTGCTCAAA 5712 30 100.0 35 .............................. CCGGCACGTCAAGGGGATAAAGGCCGGCCGGCCTA 5777 30 100.0 37 .............................. AAATCAGGGACTATGAAATTGGCCACAAGACCAGCAA 5844 30 100.0 36 .............................. TTGGCAGGGATTCGGAAATAAATTGAAAAGTAGTTA 5910 30 100.0 37 .............................. AATACAAGCAGGTTTCACACATTGTATTAATTCCTCC 5977 30 100.0 37 .............................. GGCCATCAACCAATATTCCATCCAATATCTTGCCGCC 6044 30 100.0 38 .............................. TTTATTAGCTTGATAGCGATTTCATTGCACCGGCCGGG 6112 30 100.0 36 .............................. AAAAACTATCGGCTAGAACAGGCCACGCCCGATAAG 6178 30 100.0 36 .............................. CGTTATATGGGTGTAATGTTCAGCAGTCTTTCATAA 6244 30 100.0 38 .............................. CATAGAGAATTAGCTCCCTGCGATCCCCAGGAGTTTCT 6312 30 100.0 36 .............................. CCGTTCAGGTCAAATATGCCGAACGGACTTCCGTCA 6378 30 100.0 37 .............................. TCAAGTGGAACCAGCGCAGCCATGTCATAACTGACTG 6445 30 100.0 36 .............................. AAAGTGATATATTTAAAAATAAAATTTCATTAGTTA 6511 30 100.0 37 .............................. TTTTCAGATCATTAGATATTTTACTCTTCCCTATTGA 6578 30 100.0 36 .............................. ACCTGCGTTCGTTAACTATCTGGAAAGACATCCCAC 6644 30 100.0 35 .............................. TTGTAGTATATCCTGTCATTGTTTGGATCATCTGC 6709 30 100.0 36 .............................. CGGGTCATCAGGTAGCGGACCTGGGAGTTGGTAAAC 6775 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 37 30 100.0 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : GATTGCTTTTGGGTCGCCTTAAATATGCGTAAAAACCGCTCCTTGATACCTGGAGCACCTCAGCCATCTTCGCAACCCGAAATTCGGAGCGGTGTGCCTCCATGAAACGAAAGCGTTCTATTTCTGGTTTTTGGCGAAGTAGCTGCCGCCTTTTTTAAGATGGCGTTTTCCTCTTTCAGATCCATAATTTCTTTACGAAGCCTACRCAACTCATCGTCAGCCTTGTGCAGGTGACCGCTTCCGGGAAAGGCATTTTCGCCGTGTTTACCGAACTTCCTTATCCACCCATATAGCGTGGTGGGACTTAAATCTAGTTCCCTGGCTACCTCAGCGGCAGACTTTTCCCCCGCCTTCACACGATTGACTGCCATAATTTTGTATTCTTTATCAAATGTTCTCATTTAGGACACCTCCGTGATTTTATTGTATCACACGTTCTATGTGTCCATAAAATCGCGGTAAGGTCACTTACCATTCCTATCATTCGATACTATATCTAA # Right flank : AGAAAAGTGGAATTGAAGATTGTCGCACAGATCGTTGGGTTTTTAGCCTACCTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4313-294 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWQQ01000081.1 Desulfotomaculum profundi strain Bs107 Contig_561, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4312 30 100.0 35 .............................. TGGACCAGAACATCATGCGCGGTCTGGCCACTGTC 4247 30 100.0 36 .............................. CCCGTCGATTAGTCTCATAACGCATGAGTTGAATAT 4181 30 100.0 37 .............................. CTTAAACTATTATTTACTTCTATTTTCTGTTTTAATT 4114 30 100.0 39 .............................. GATATGTAAACTATCCCGGGGTGCTGGCTGCCGTGACAG 4045 30 100.0 35 .............................. GCAGGAGGAGGTTTAACATTATGTATGTAGAATTA 3980 30 100.0 36 .............................. CTCTGAAATTTCTGCCGATGTGCGAATTGGATATTC 3914 30 100.0 37 .............................. CAACCTTTTTCACATACTCGGCGGGTGTCCTGACTGG 3847 30 100.0 38 .............................. TCGTATAAGAAAAATAAAAAAATATGATGCTGATATTA 3779 30 100.0 34 .............................. AGATAATATTTTTATTATCTATTATTATATATTG 3715 30 100.0 36 .............................. TTGACATATTCTGTCGAATAATGTAATGTTAGTGTA 3649 30 100.0 39 .............................. ATTGATTGGGCGAATTATGATTCTTTGGTTCGTTCTCTT 3580 30 100.0 37 .............................. TTGGAAAAGCTTAGAAATATAGATGAAGAGGTATCGA 3513 30 100.0 39 .............................. TCCATTCCTGAACACCCCCTTGTTACGTAGTTTCCATAC 3444 30 100.0 38 .............................. CCAACGGCTCCCGAATCATAATTTCCATGCCCTGCGTC 3376 30 100.0 38 .............................. AGTCTATTGTGTCACTTTAATTAACTTTTGAGACTTTA 3308 30 100.0 36 .............................. TACTAAATATGTACAATGCTACCAATAATCTACTTC 3242 30 100.0 35 .............................. GGGGATGACAGGTTGGCAGGTGAAAAGTGTTTTTT 3177 30 100.0 35 .............................. CGGGCGGCTGGAATAGACGTCGTGGAAACTGCTAC 3112 30 100.0 39 .............................. GGGCTTCCTTTGGAACTGACCGTGCTTGGTTGTAAATTT 3043 30 100.0 39 .............................. GCCAGAACCTGCTGCCACATGAGCAAGGGTAGGCAGGTA 2974 30 100.0 35 .............................. GTGTTAGTTTCTATATCGCATATCTCGGATTGTGC 2909 30 100.0 36 .............................. TCGGTCAGGAGGTAAAGCGTCTAGGGCTGGATGCGA 2843 30 100.0 35 .............................. ATTTTATCAGAGAGACTGACAATCAAGTTCTTTCC 2778 30 100.0 38 .............................. AATACTGGTACAGCATTCGTCACCGCATCGGTGCTGAC 2710 30 100.0 35 .............................. TAGAGAAAAAGCAGGAAAACCAATGCCTTGTTGTA 2645 30 100.0 35 .............................. TTATATTAAGCAGCTCTCGTTTGGCTTCCCACGCC 2580 30 100.0 40 .............................. ATTCGGTCAAGCACCTGGTTATAGACAGAACCCTTTATCA 2510 30 100.0 37 .............................. TATGGAAACATGACAATACAAATGACTTATGATATGT 2443 30 100.0 38 .............................. TTGGAATTAGTAGTAAAATTTATAGATATGTTAATTCC 2375 30 100.0 35 .............................. CCATTGAGACCGTGGAAAAAGACGAAAATGAAGCG 2310 30 100.0 35 .............................. TTGGGTAGGGATTTTTCGTAGATTGGAGTTGCTTA 2245 30 100.0 38 .............................. CAATACTCCCTGAAATATGCCGGACCGGTGGCAGCTGC 2177 30 100.0 37 .............................. ACCAGTCTGATGAACCGTGGATAATCTGGTGCGACCT 2110 30 100.0 37 .............................. GATGAGAGTGGGCGATCTCCGACATAGGGTTACACTA 2043 30 100.0 34 .............................. GACTGAATGGCCTACAATACTAAAAACATAATTC 1979 30 100.0 37 .............................. TTTCAAGCTTGAGGGTCAGGTTGTCTATGTCGAAGAA 1912 30 100.0 36 .............................. CCGCTATGCTGCCGGCAGTAATGAGTGCTGCCGCCG 1846 30 100.0 34 .............................. ATCTATACATGGCAACCTCACTGGTTACATCAAA 1782 30 100.0 35 .............................. AAATGCTCGAAGAACTCATCATCACTTCGCGAGTT 1717 30 100.0 35 .............................. GACTGAATGGCCTACAATACTAAAAACATAATTCG 1652 30 100.0 35 .............................. CACTGTCGTGGCTGAGAGTAGAGAACAGGCTGTTA 1587 30 100.0 36 .............................. TTGGAAAGATGACTCTACAAAATTCAATAAGCCAAC 1521 30 100.0 36 .............................. TCCCCTCAGCCACCAGCTTGCTGTCGGTGGCCGCTG 1455 30 100.0 36 .............................. CCACTCTTAAGCCATGTCGCCTGTTCGCTTTCGGTA 1389 30 100.0 36 .............................. ACTGACGAAATAAGCAGTGGCCAGTTCGACTTCTAT 1323 30 100.0 35 .............................. TTCTACAACTTGACGTAGGGTTTTGATTATTCCCG 1258 30 100.0 37 .............................. CCAGTTGGATATCTTGCTGTGGAGTGCACAGAAGATA 1191 30 100.0 38 .............................. AAGAAAGGCCGGGGAGTTCCCTCGGCCTTGAATTTGGT 1123 30 100.0 37 .............................. TCCGGTGAGGGTGAAACGTGCATGAATGTGTTGAGAC 1056 30 100.0 39 .............................. TCCGCCGGGCCTTCAGTTTCGATCTTGCCTTACCTAAAA 987 30 100.0 37 .............................. CCATTAGTTCATCCCAGGTAATGGTTCTAAACTTCCG 920 30 100.0 35 .............................. AAAACTGGTGAGCTTCGCAAAGGTATACCCAAAGG 855 30 100.0 38 .............................. CTGGATGGAGGAAGGGCACTATGATACTCAGCTTAAGC 787 30 100.0 37 .............................. CTACCGGAGCGGGACTACCGGGGCCTGGACAAGCGGC 720 30 100.0 37 .............................. CGACATAGCAGCCAACATGGAGACGGCAGCCAAAGCC 653 30 100.0 36 .............................. CTCTGCCCTTGCCAAAATCAAAAGACGCATCCGAAG 587 30 100.0 36 .............................. CGGATGGCTACAAAGCAACACCGCGTGCGCCAATGT 521 30 100.0 36 .............................. ATAAACACTTCACTCATATAAATCAATACATAACCA 455 30 100.0 36 .............................. AAGACCGGTCTCCCTATTGGATTTTCTGATCTATTC 389 30 100.0 36 .............................. AGGTCAATCAAAGTTAATTCGACATGATCAGGTGCG 323 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 61 30 100.0 36 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : CCTATGAGGAATTGAAACCATCTTTACATGCTGAAACACCGTTCAGGCCAGAT # Right flank : CCACATGGCACATACATCCTTAATCGCCTTCTGTTGTTGGTTTTATGGTGGCTAAAGATGTCAAGACATTTTTTTGAACTTGTTTAAGGTGGTTTTTCTCCCTCCTTTGTGTATTTTATAAGAAAAATATTACCATTAAAACCATTTATTAACTGGTAATTAAGTAAATTTTTCCCATGCAATACTACTGCAAAAGAAAGTTGACCATAAATGTTGATAACTTTTCCTTCCACCACTAATGTACCGATATTTCACGCACCCGTTCCAGTCATGGGCTTGCGGCCGCCAGGGAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //