Array 1 29629-29901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOFP010000043.1 Escherichia coli strain ARS-CC9635 NODE_43_length_30080_cov_7.61227, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29629 29 93.1 32 .........A..T................ AATGATTGATATAAATCTGTGTACGGTGTCCG 29690 29 100.0 32 ............................. CTAGGATAAATTAAAAGACAAAATTGCAGCAA 29751 29 96.6 32 ............G................ GAGCGACCAGTATCAAGATCGACAGGTTTTGC 29812 29 100.0 32 ............................. ATCGATATGTACGTTAGCGAGGGGATCACGCA 29873 29 93.1 0 ...........A................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAACCCTTAAACCGTTAAGA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25503-26812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOFP010000002.1 Escherichia coli strain ARS-CC9635 NODE_2_length_89485_cov_7.49343, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25503 29 100.0 32 ............................. CATTGAAAACATTGCCTTTATTTTATTTTTTG 25564 29 100.0 32 ............................. GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT 25625 29 100.0 32 ............................. CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC 25686 29 100.0 32 ............................. GCAGGCACGGGCAATATCAGACTCGGTCAAAG 25747 29 100.0 32 ............................. CGTCTGCATACCCCTGTTTTTGCTCTTAGCCA 25808 29 100.0 32 ............................. TCGGTAAACGACTGGGTGCATAAATACAAGGG 25869 29 100.0 32 ............................. CTCGGTTGTTTTCATATTACCGGCCTGCCACT 25930 29 100.0 32 ............................. ACAATATCCCGGACCGGGCGCTGATTTAGTCA 25991 29 100.0 32 ............................. CTTTTCATCAATCGGAGCATATTTGCGATCGA 26052 29 100.0 32 ............................. CGGACGGTGGGAATATAGAAAATCCGTCCACC 26113 29 100.0 32 ............................. TTATACTCTTTTCATCGACTAAGGAGGGGAGG 26174 29 100.0 32 ............................. CAATAACGCAGCATCCAGGAAGCTGTTTCCGC 26235 29 100.0 32 ............................. CGATCGGTGAAGAGGTCCGCGAAATACTCACT 26296 29 100.0 32 ............................. GCGATAGTTGATTCAGCCGCGCCAGCGAATGT 26357 29 100.0 32 ............................. GGGCCGCCGCGAATTTACACACGATTCAATAC 26418 29 100.0 32 ............................. CGTAAACGCCCCGTCGCCATTAATTTCGGGGT 26479 29 100.0 32 ............................. TGGGATGAGCAAATAACGTCGTTTCCTAGAAA 26540 29 100.0 32 ............................. CCGCCGTGCCAGTGATCCTCATACGGCCTGTT 26601 29 100.0 32 ............................. AAATTAAGAACGGCGTAAACGACGGCAGCATG 26662 29 100.0 32 ............................. GTGATGATTCAGAGCAGACATTAGCCCGCGCT 26723 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 26784 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTTGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //