Array 1 9008-10195 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDPQ01000013.1 Escherichia coli strain 704, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9008 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 9069 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 9130 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 9191 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 9252 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 9313 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 9374 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 9435 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 9496 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 9557 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 9618 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 9679 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 9740 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 9801 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 9862 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 9923 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 9984 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 10045 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 10106 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 10167 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTGCACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 530245-532043 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDPQ01000002.1 Escherichia coli strain 704, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 530245 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 530306 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 530367 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 530428 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 530489 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 530550 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 530611 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 530672 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 530733 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 530794 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 530855 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 530916 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 530977 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 531038 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 531099 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 531160 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 531221 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 531282 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 531343 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 531405 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 531466 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 531527 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 531588 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 531649 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 531710 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 531771 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 531832 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 531893 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 531954 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 532015 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //