Array 1 73848-73043 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHGX01000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain N029 N029_trimmed_contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 73847 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 73786 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 73725 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 73664 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 73603 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 73541 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 73438 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 73377 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 73316 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 73255 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 73194 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 73133 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 73072 29 96.6 0 A............................ | A [73045] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92144-89980 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHGX01000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain N029 N029_trimmed_contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92143 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 92082 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 92021 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 91960 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 91899 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 91838 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 91777 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 91716 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 91655 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 91594 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 91533 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 91472 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 91411 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 91350 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 91289 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 91228 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 91167 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 91106 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 91045 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 90984 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 90923 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 90862 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 90801 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 90740 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 90679 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 90618 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 90557 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 90495 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 90434 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 90373 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 90312 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 90251 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 90190 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 90129 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 90068 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 90007 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //