Array 1 81993-82873 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJV01000012.1 Cronobacter sakazakii strain cro645A3-2 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81993 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAATA 82054 29 100.0 32 ............................. CGGAGATCCGGAAGTGTCCTGGCTGCTATATG 82115 29 100.0 32 ............................. CTCTTGCGCCCATTTCAGATCTCCTGCCAGTA 82176 29 100.0 31 ............................. GCCAGTATCGGAAATAACAACGATTTTGTCG 82236 29 89.7 32 T.CG......................... GTCCAGTAACCGCCAGTAATTTTGCTGACGGC 82297 29 96.6 32 .T........................... GTTTCTGCCTCTGAAGCCCAGCCGAGGGGATT 82358 29 96.6 32 .T........................... AATTATTAGACCAGGCGAAACTTGAAGAGGTC 82419 29 96.6 32 .T........................... GCGGGGATAGCGTTTGGCCTGTTGGTAGTAGT 82480 29 100.0 32 ............................. CTGTTGCTCCTCGTTCTGCAGGAAATTGGATC 82541 29 96.6 32 .T........................... CCTCTAATACACAGGAGTTGCCACCCGGCGAG 82602 29 96.6 32 .T........................... AGTGTCTACATTTAATGATGTCAGTTTGTGTT 82663 29 100.0 32 ............................. TCTTCCGGCGCGTCGGCCAGCTCCACCTGCTC 82724 29 96.6 32 ...........A................. ATAACGGCCAACTTTACATTTAAAAATGATGG 82785 29 100.0 32 ............................. AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 82846 28 79.3 0 G........-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.6 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGTTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGTGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAGGGCGAAAAAATGCCAATCAGTACAAAGGGTTACCGTTAGT # Right flank : GCTCAGGCTCTTAGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 521-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJV01000235.1 Cronobacter sakazakii strain cro645A3-2 contig235, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 520 27 93.1 33 --........................... AGAACACGTTCCCGATGGGCGGCGGCTACTTCC 460 29 96.6 32 .C........................... GTGCTGGTTTATGTCAGACGGGATTTTGCTTA 399 29 96.6 32 .C........................... TGGAGCCGGGGCCAGCGGACAGCGCTATTTAC 338 29 96.6 32 .C........................... GCGTTTTACAACACCACTCTCGGCGAGCTGTG 277 29 100.0 32 ............................. CAGCATGAGGCTCACACCAGTATTTGGCATGG 216 29 100.0 32 ............................. AACGGTGAATTCTTAGAGGCTTAAGCACACTG 155 29 100.0 32 ............................. CGGAGTTGAATGGCGGGCATCTTTATCAGGAT 94 29 100.0 32 ............................. CCATATCCCTCGACAATTTGCGGTATGACTTC 33 29 100.0 0 ............................. | G [12] ========== ====== ====== ====== ============================= ================================= ================== 9 29 98.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : | # Right flank : GCCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17801-19871 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJV01000070.1 Cronobacter sakazakii strain cro645A3-2 contig70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17801 28 100.0 32 ............................ TGCAGGCTTACGGCAAAACCCGCAACGATCAA 17861 28 100.0 33 ............................ CAGGTGCGCAGTTCTGAGATCGAACAGATTGAG 17922 28 100.0 32 ............................ GTTATAACGAATTATCGTGCTGATTAAATCCT 17982 28 100.0 33 ............................ ACGCGCAGGCGGAGGTTTGCGGGAACAGATAAT 18043 28 100.0 32 ............................ GAGCGCATATCGATATCGAACATTTGCGCGTT 18103 28 100.0 32 ............................ ATCCTTGAGCCGCCAGGCGGCATTAACCTCTT 18163 28 100.0 32 ............................ TCAAGCGGCGGTACAGTGCCACCACCCATCAG 18223 28 100.0 32 ............................ AGTGCCGCTGCGGTGGCAGTGATTCCGCAAGG 18283 28 100.0 32 ............................ CCAACACACTGCGAAAAACCGCTTCACAGATA 18343 28 100.0 32 ............................ TGTCACGCAAAAAATCCAGTATTAAGAAATAT 18403 28 100.0 32 ............................ CTTAATCGGCGTACTGTGTATCGGGGCGGGCG 18463 28 100.0 32 ............................ ACCCCACGCCGCACGTCACACCCTGTCACGCA 18523 28 100.0 33 ............................ TTCCCCCTGGCGGCTGCAATTCGCAGGTTTCAC 18584 28 100.0 32 ............................ GACGCCGTAACCGCGGGCAAGACTGAGTTGCT 18644 28 100.0 32 ............................ GCACCGGTGGCGGCAGCGCTTAACTCGCTCTG 18704 28 100.0 32 ............................ ATGTCCGCGTTGCCTGTCAGCGGCATGCATAT 18764 28 100.0 32 ............................ ACCGGGGAAGTTCTTGCTTCCGAACCGGCACC 18824 28 100.0 32 ............................ GTTGAGATAGTACCGGTATACAAAAACTTTGC 18884 28 96.4 32 T........................... GATCATGGTGAATGAAAAAGGCGAACCATTAA 18944 28 100.0 32 ............................ GCAACGCACACAGACAGCGCGGCGCACGGTGT 19004 28 100.0 32 ............................ TCCAGCTCCACGCCGTCATAACTGGTCGGCAG 19064 28 100.0 32 ............................ GTTTTTGCCAGCTCAATCGCCTTAATGGTTGC 19124 28 100.0 32 ............................ ATGACCGACACAGCGATATTTAACACAGAAGA 19184 28 100.0 32 ............................ CGCGTCATCTGCGCCAGTGGTGTTGATTCGAT 19244 28 100.0 32 ............................ GCTGAGCGTAGTCAAAGGGGCTTGTGCGGCGG 19304 28 100.0 32 ............................ GGAGTAGCTATGCTCGCGGGTGCGGCCATTCT 19364 28 100.0 32 ............................ AGCACCCGGCCGTGACCAGCAATAATTTCCCC 19424 28 100.0 32 ............................ CTCTCCAAATCATTTGGCAAATTATCTGCAAT 19484 28 100.0 32 ............................ TGGCACGCGCGCATAAAAAAGCCCCGGCGGTT 19544 28 100.0 32 ............................ GAGCGTGGCGCGGTTGAGTGGCCCTGCTACCG 19604 28 100.0 32 ............................ CGCACCAGCGTCTGGCCGCTGCTGGTGCTCTC 19664 28 100.0 32 ............................ TGCGCATCACAGAAATTATGCTGCCCGGTATT 19724 28 100.0 32 ............................ GCGCACGGAGCGCCCCTTTGCAATTGGCTGAT 19784 28 100.0 32 ............................ ATCGGACTGACGGTCAGCACGATAGTCTCGTT 19844 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCAAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACAATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGTCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGCATTGATTTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGACATTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTGTTATCGTTATATAAATAACGCCGCAATATCATGGGAAAATTATCCATAAAATTTATGGTTTATGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGTGCTAATTAGCCCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCCGATAATAGCGAAGGCCCTATAAAAGTTCACATTTAGTGTCCTTCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 76814-76606 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJV01000014.1 Cronobacter sakazakii strain cro645A3-2 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76813 28 100.0 32 ............................ GACAGCGCCGGTCAATATTCCGTTTCGCTGGC 76753 28 100.0 32 ............................ CCGGTGCTAACGCGCAGCATTTCGCGGCCAGC 76693 28 100.0 32 ............................ TGGTCAAAAATTCACGTTGTCGAACTGCGCAC 76633 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCTACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGTGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTCGCACGCGTACAGGTGAAAAGTAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAAAAGCGGCTTGCTGGTTTACAGGAGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGCAAAACCACATTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6129-7073 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJV01000064.1 Cronobacter sakazakii strain cro645A3-2 contig64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6129 29 100.0 32 ............................. GAAATAATCACCGCGCGCGGCAGCGGGTTTGT 6190 29 100.0 32 ............................. ATATCGGTAGGCCCACGCAAGACCACTTTTTA 6251 29 100.0 32 ............................. GCGTTTGTCGATGCACTGTGTGACTTCAAGAA 6312 29 100.0 33 ............................. GCAGTGCGAGAAGTTGGCTGCGGAGAATGCGGC 6374 29 100.0 32 ............................. TCCGAAACCTACGGGCAGCCCGTGATGTATAA 6435 29 100.0 32 ............................. TAATCGAATTCGGCCTGCTTAACGATTTTCAC 6496 29 100.0 32 ............................. GCCCTTCTCGGTAATCCCCAGGGCGGATCATA 6557 29 100.0 32 ............................. ATAGTTGAGCGCCTGTCTCATCAATCGGACTA 6618 29 100.0 32 ............................. ACGAACCCAGCACGGCAAAACTGGCGGCAAAA 6679 29 100.0 32 ............................. GGCTTGCTGATATCAACGCCCGCGAGCTGCAT 6740 29 100.0 32 ............................. CGTGGCGAGTCTTACCGTGTTCTTGATACCGG 6801 29 100.0 32 ............................. CACCGCGGCATGAGCAACTGCATTACGCTCAT 6862 29 100.0 32 ............................. ATTGCGGGATGACCAGTTCGCGAGCTTTCTGA 6923 29 100.0 32 ............................. ATTGCGGGATGACCAGTTCGCGAGCTTTCTGA 6984 29 100.0 32 ............................. GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 7045 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTAAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCACTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAACCGTTGGTGAGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGTGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //