Array 1 79129-81797 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXKD01000016.1 Providencia rettgeri strain PR002 NODE_16_length_126541_cov_61.0216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 79129 28 100.0 32 ............................ TATAACGGTAAGCTTCATGCTTATATTAGAAA 79189 28 100.0 32 ............................ TTGAAGATAGTGAAGGAGCCTATAACGGTAAG 79249 28 100.0 32 ............................ ACCTGTAGGAATGTATTCAAGCGTGTAAACAC 79309 28 100.0 32 ............................ AGTTCATAGTAGAGTCAGAAAATGAACCCAGT 79369 28 100.0 32 ............................ GTCTAAAATTGCTGCGCGTTCTTCATCTGAGT 79429 28 100.0 32 ............................ GTGCTAGAAATCCACCAGCAATTTTAAGAATA 79489 28 100.0 32 ............................ TTATTAAAATACTCGATGATGTTAGAGAACAT 79549 28 100.0 32 ............................ CAAATCGTATTCTACGACGGTTCTTGGTACAT 79609 28 100.0 32 ............................ GTAAACACAAACGGAAGTGACTATGCTGAGTA 79669 28 100.0 32 ............................ GGTGATTTTAGTAAGCCACAATTAAATAAAGC 79729 28 100.0 32 ............................ CAACTAATTCCGCGCCGTCACCTTCTTTTAAC 79789 28 100.0 32 ............................ TTTATAGATTTGAAAGATGTCATTCTTCCTTA 79849 28 100.0 32 ............................ TCGGTATATGTACCAAGAACCGTCGTAGAATA 79909 28 100.0 32 ............................ TGATAGTTTGGTTTGGGGTAATGGATCTGTGT 79969 28 100.0 32 ............................ CAGTGATAAGCGTGGACAAGCGCAAGCAAACT 80029 28 100.0 32 ............................ TCTTGATGCAAACACATAATCCCCTGGGGTAG 80089 28 100.0 32 ............................ ACATGGGGAAAGTGTAGAGAGAAATTTAGTAA 80149 28 100.0 32 ............................ AAGAACTCTATGAGTTAACGGGTTATGCTAAA 80209 28 100.0 32 ............................ ACCGCAAGCGCTATTTGTGATACTAACTCCTT 80269 28 100.0 32 ............................ TAATCACTTGTGCCGAATTGACCAGGTATTAA 80329 28 100.0 32 ............................ TCTCATGAATTGCAGGACAATTACCCCTAGCT 80389 28 100.0 32 ............................ ATTTCATCATCGCTATAAACGCTTTGCGACTC 80449 28 100.0 32 ............................ ACTATAGTTTGTCTGTTGTGCAGTTGCTGTAA 80509 28 100.0 32 ............................ TTGATGGTAGTGATGGTGCGTATAACGGTAAA 80569 28 100.0 32 ............................ TGATAGTGTTGAGTCACGCTCTTGAACTACAA 80629 28 100.0 32 ............................ GTAAATCTTACCCGAACGTCAATGCAGCAAAT 80689 28 100.0 33 ............................ AATATACAGTTGAGCTTTTGAGTCCCCTTTTAT 80750 28 100.0 32 ............................ AAATTGCCATTTTTCAGCGTCGTATCTCTACA 80810 28 100.0 32 ............................ TCCTCACGATTCACGCCGAAATGAGCACGTGC 80870 28 100.0 32 ............................ ACTATCGAAGAAATCACACTCTTCATATGCGA 80930 28 100.0 32 ............................ AGCACCTGTGACTTCAATCGTTGGATTATATC 80990 28 100.0 32 ............................ CGATGAAAGAAATCATCACGAATGCGCTGAAG 81050 28 100.0 32 ............................ TGTAGCATTTATCACACAGGAAGCAGCAAACA 81110 28 100.0 32 ............................ TTCAGCGCCAAGCTCACGAGAAACCCCGCATT 81170 28 100.0 32 ............................ CACTTAGAACCGTAACCTCGCTCATGTCGGCT 81230 28 100.0 32 ............................ AATATATTCATCCTCTATTTTCCCAAACCTTA 81290 28 100.0 32 ............................ TTTATTCACAGCATTGGATGCTGAATTCGGTT 81350 28 100.0 32 ............................ TTCACCGCATTTATGCTCATCGAAAGCACAAT 81410 28 100.0 32 ............................ ATTGCCGCTGAAGCTAATTTATCAACGTTTAA 81470 28 100.0 32 ............................ GTAGATTCGGAATGCAAGATTTGGACAGTGAC 81530 28 100.0 32 ............................ TATTAGCGGATTATTCGAGTTCAATACCATCT 81590 28 100.0 32 ............................ AGCCCAACGAGCACCATCAGTATCAACAAAAT 81650 28 100.0 32 ............................ ATTGATGGCTCATGCGGCTTGCCCCACTACCA 81710 28 100.0 32 ............................ AACAGGGGGCGGTAAATAATGGCCAAAGTTAA 81770 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTGAAGCTAAGCAAGGCTTACAATTACAAGAAATTGATAAATTAGATTTTTTAGCGGATACGCGCTCGATTCAAAATGCGGCCCGCAAAAGTGAGTTGTTAGAAACTAACTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCCTCACAAAGTATTTTTAAAGACTTAAACAGCATGTCACTTTTCGGCAGCCGTTAATTATTTAATATTCTTTTTACTCACCGCGCTTTGGAGCCATTCAAGCGCGGTTTTTTGTTTGGGGATTTTTAGTCACCACAAAAAGGGGATTTGAGTTTATTATTGTGTCTTTTTTATATTGCATAAATTTGCTTTTGTTTTACCCTTATTTGACCTTTCATTTTTGCTCTTTAAAAATCCGCTGATTTAACAATTAGTTATAAGATTCACTAAAAACAAAGGTATTTTTTGTATTTTAAAGCTAGTCAGTTGTTTTTACTTGTTTTATTCTGTTTTTGTTATA # Right flank : AGCGCTATCGATTTTATGTATAAAGATAATCAGGTTTATGACCACAAAGATGGTATTAAAAGAGCATTAGTGAGTGTTTTTTACTGGTCATTCTGTGAAACCCTTCGCAAATTTGGCTTTGGTTGAAAACAAGGACTTGTTTCGTGGGATAAAGCTTATTCTAATAGATTGATTCAAAAATCTTATTATTTAAGGACAGAATCCAACTATTATGGACGATTTTTCACCAAGTGAATTAAAAACTATTTTACATTCGAAACGTGCCAATATGTATTACTTGGAACATTGCCGAGTTATGCAAAAAGACGGCCGTGTTCTTTATTTCACTGAAGCTAAAAACGAAAACCTCTATTTTAATATTCCAATTGCAAATACCACGGTCTTACTTCTGGGCACTGGAACCTCTATTACTCAAGCAGCAATGAGAATGTTATCCCAAGCAGGGGTATTAGTTGGCTTTTGTGGCGGCGGCGGTACACCGCTGTATATGTCTACCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 90493-92442 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXKD01000016.1 Providencia rettgeri strain PR002 NODE_16_length_126541_cov_61.0216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 90493 28 100.0 32 ............................ TGATCCGCAATGACGGTGTGATAAACAGTTTA 90553 28 100.0 32 ............................ GTTTAGTGATGAGCATTCATTTTATAAAGACG 90613 28 100.0 32 ............................ CATCAGGGAAAAGATGGTCAAACGCTGGTTGT 90673 28 100.0 31 ............................ AAAACACCAGGTATCATGGATTGGAAACAAG 90732 28 100.0 32 ............................ TGAAGCTGTTAACGTAAGTATGAAGCGTATAA 90792 28 100.0 32 ............................ AATACTGCCGATAGTATTTATAATTATCATTT 90852 28 100.0 32 ............................ TTTAAAATACGTGGAGGGAAATAAATATTACA 90912 28 100.0 32 ............................ ATCAACTGCTACTATGACCCCATCATTTTGTG 90972 28 100.0 32 ............................ CGCCACTGTTGTCGAGCCATAACCAACTAATT 91032 28 100.0 33 ............................ TCACCGCAAAACGGACACTGTGGCATTTCTGAT 91093 28 100.0 32 ............................ GTTTTGAAATACAATAGTTATTCCATATTTCA 91153 28 100.0 32 ............................ TGATAGTTTGGTTTGGGGTAATGGATCTGTGT 91213 28 100.0 32 ............................ TGTTACAGCTTTATGAGCGCTTATATCTGCCT 91273 28 100.0 32 ............................ GGTGAGATTGGGGAGTCATTTTACGCTCGCAT 91333 28 100.0 32 ............................ GCGCGGAGGTTCTTTAAAATTTGACATCATCC 91393 28 100.0 32 ............................ TGCCCAGCGAACACATCCTCGTCAACTTCATA 91453 28 100.0 32 ............................ AATACTCTCGGCATAGATTTAGCAATTATTGT 91513 28 100.0 32 ............................ CACGGTTCATCAAGTCCGTCATGGATTACGTT 91573 28 100.0 32 ............................ AACAGGCTGGCTAAGGGGAGAATATGGGTAAA 91633 28 100.0 32 ............................ TTGCGCGGTATTAAATCATCACTGGCCAGACG 91693 28 100.0 32 ............................ TATCTATTAATCAACTCACCACAGCCCACCGC 91753 28 100.0 32 ............................ GTTGAAAGTCACAAGCGACAATGCACGCTGTT 91813 28 100.0 32 ............................ ATATTCGTGCCATTCAGATTCAAAATATCATC 91873 28 100.0 32 ............................ CGGCGTCGAACCACCTATGATATTAGCATCTT 91933 28 100.0 32 ............................ CGTCATCAGAAAGTCTGACAAAATACGCCCCA 91993 28 100.0 32 ............................ AACATAAACGGATTCGAACAATTTGCTTATTT 92053 28 100.0 32 ............................ TACCACTAGTCAAGTTAACGAAGTCACCATTT 92113 28 100.0 32 ............................ CCTCAAGAGGGGAATGGTGAGAGCGCTGATAA 92173 28 100.0 32 ............................ TATCTCAATACAAAGAGCAAGGAATGTTTGCT 92233 28 100.0 32 ............................ CCGAATTATCAGCGGGTTTGCATTTACCAAAA 92293 28 100.0 32 ............................ GTCAGAATCAAGCAAAAATAATCGTTTTGACC 92353 28 96.4 32 .............T.............. TGTTAAACTGTTAGCCCCTAGCGCATCTGTTG 92413 28 78.6 0 ......T...GT......A..AG..... | TA [92433] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.2 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : TATTAAATCGATTCAGGCAGTACCAGAGCAGCATGTTCAAGTCAGTTATATTCGAAAGCATGTGAAAGGGCAGAGCCGAATTGACGCTGCTATGCAGCAAAAAGCACGATTGTGGTCTGAAAAATCAGGGCAACCATTGGAACAGTGTTTGAAAACATTGTCTGCGAGTAAGCCAAAAGCGAACAATCGTTTGCCATTTATTTGGGTTGAAAGTTTACATGCCAGAGATAAGCAAGTCGAAAGCCGGCCTTTTCCTTTGTTTATTGAAAGGATAGAAGCTACACAAAAGCAAATTGGGGTGTTTAGTTGCTATGGTCTTAGTCAAGCAACTAGTGGCTCAGTTTGTTTAGCAACGGTTCCCCATTTTTGACCTTTGTTTTTTGCTCTTTTAAAATTAGTCAATAAATCAGTAGGTTATAATCATCAGTAAATAAAAGGGTATTTTCCAATAAATACCCTTAACTGATTGTTATCACTTATTTTTTATTTTAAAGTGCATC # Right flank : ACTGATCTATTTACTGCAGTCGGTATGTAGTACAGACGATACAATGGAATGTGATTTGCACTAAAAAGCAATTTGCATTACAGTGCAAATTATGATGAGGGTATATGTATACTGTAAAATATCATTCTGAGGCTGAAAAAGAAGCAAATGCACTGCCTTTAAAAATCAAGGTGAAATATGACCGCCTCATTAAAAAATTAGAGTTATCAGCTAATTATTTAAGAGAACCAGATACTAAATCATTGGGCGATGGATTGTTTGAGATAAGAACTATGGGAAGTGAAATAGCTAGGGGGTTATGGGTTTACCACAAAGATAAAACAATTTTTATGCTCAGGATCTTTATCAAAAAGTCACAAAGAACCCCAAAGTCTGAGTTTTATTTAGCGAGAAAACGTTTATTGGAGCTATTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGCTGCTTATGAAGAAGAAATAAGAACTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //