Array 1 759-1850 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ236553.1 Neisseria meningitidis strain 311112 Scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 759 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 825 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 891 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 957 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 1023 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1089 36 100.0 30 .................................... TCAATGATAAAACTAAAGTTTAAACAGAAC 1155 36 100.0 30 .................................... TCAATGATAAAACTAAAGTTTAAACAGAAC 1221 36 100.0 30 .................................... TCAATGATAAAACTAAAGTTTAAACAGAAC 1287 36 100.0 30 .................................... CTGAAGCCTCTCTTTTAACGCCATTTTTAT 1353 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG 1419 36 100.0 30 .................................... GCCCCTGCTCGCGCACCGCCGCAACCTGCC 1485 36 100.0 30 .................................... GCAAAAATCTTCCTAGTAATATCATGGTTA 1551 36 100.0 30 .................................... ACGCGGCAAGCGGCACGTTTACCAACTTTT 1617 36 100.0 30 .................................... CCGATTCGCGCCTGAGTTGTCAGGCGGTTG 1683 36 100.0 30 .................................... GCTGCTGCTGGACGTTACACCTTTGTCGCT 1749 36 100.0 30 .................................... ATACGCGAGACGAAAATAACGAAATTATTA 1815 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //