Array 1 43387-42690 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOY01000001.1 Ligilactobacillus agilis strain SW282 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 43386 30 100.0 38 .............................. CTAGGTTGCGGGCAGGTGATACGATTGAACAAGCGGTA 43318 30 100.0 36 .............................. GGTATCCACCGTAACCATAACCCCGTCAGCACCGTT 43252 30 100.0 35 .............................. TATAACGAACAAGGACCTAAAGGAGGAAAATAAAA 43187 30 100.0 38 .............................. GATTACGTCCAGCAATCCTTGTTGTTCCCATTCAGCAA 43119 30 100.0 36 .............................. AATATCAGTTGCTGAATTAGAACGTATTTTAGGGTT 43053 30 100.0 36 .............................. ACTTCTAGGATTCTTGTAACTCCTCTTAAAGACGGA 42987 30 100.0 39 .............................. GTTCAACACTTCTAGTTGATCATTGACACCTTCATTGAT 42918 30 100.0 36 .............................. TAAGGCTAACCACCAGTACGAGCTAGCTAAGAGTTT 42852 30 100.0 36 .............................. GTTTATTACCAAGAAGAAGGTGTGACCGATGGTTAA 42786 30 100.0 37 .............................. AGAATGAAGCTGTTTCCAGGCATCCTGCCACGTCTTT 42719 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 100.0 37 ATTTACATTCCTCTTAAGTTAAATAGATTC # Left flank : TTTTATCATTGATTTATACAGCGCTTACTCCTCTTAAAATGAACAGCCATATCTTTAAATTCCTCGTACTTTAAAACATCAGCTTCAATAAATATTACTAACTTTTACAGCTTCCTCCGATTCCATTACTCAATCAGCCACCGCCAATATAACATTGCTCCATCTAAAATTCAATAATTTTATTAAAAAATAATATATCTACTCAAAAATAACATTTAAAATACGTATGTTGTTTTAACATACATATAATTTTAATAAATATAAAAAGAGATAGCGATCACTTGATAGCGAGACATAATCAACAAAAAAAGATCGTAAATTCACAATTAAAATGCGAATTACGATCTTTAGTCTACTAAAAAACACCAGCTACTTGCCAATGCTTACGCTAAATTCCAAATCGACTCCAACTTTTTAGCTGCTATTGATAGATTATCTCCAAAATCAGTAACACTATCACCAATAGCCATTAAAATCTAAGAATCACCTCTACTTACATT # Right flank : ACTACACCCTCAAAACCTCATACTATCAACTAGTCTTCACATACGTTCTGTCTATCACCCAGTCTTACTCTCAAGTATATATTACTTTTTTCTCTAAATTCTTTCAAGTCCCTTAATTTCAACCTTTTTATTGTCTGTCGATACCAGCACTATTTTGCTTTATCTACGGTCGACAGACATAAGTACTCCACAATAAAATATCATTAGTAAAAATGAACTCAAAAAATTTTAGGTACGAATAATTTCGTGGTCAAAGTTTTTTCATTCTTCATACGAGAAAAGTATAACCGAAACATTTATATATATACTTAAAATAATAATTAACCAACGTACTTCTTTTTCCTCTTTATTACCACAATATTCAATAAAATAAATTACCAAATAAGATGCAAAAGTTTGAGACAAATCTTAAATTTAATGTATTTTTGCTAGACAGGAGTCTTTCATAATGATACTCTAGGCGTAGGATAATACTATTAATAATCTAAGTAACTCTCTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 50384-50724 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOY01000001.1 Ligilactobacillus agilis strain SW282 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 50384 36 100.0 39 .................................... TACGTCCAATTCATCTTCATCGTAGTGGTCAATATCGTA 50459 36 100.0 43 .................................... GAATGCCCTAGTCTTTTACTAATCACATATAAGTCGATGTTAT 50538 36 94.4 40 .................AT................. TCTAAGTTAAATTTATTGACGTATGCCTGAAAATCTTCAC 50614 36 100.0 39 .................................... CCGATATGGGACTGACTAAATCCCGTAAGCTGTGATAGC 50689 36 88.9 0 ................................TTGT | ========== ====== ====== ====== ==================================== =========================================== ================== 5 36 96.7 40 GATAGTGATGTATCTCCGCTAATAGGAGTCGAAAAC # Left flank : GTTAAGGCAATCTCCTTAAGTAAGCTCACTAATGAAACGAACCTTAATTACTTATTGAAGCTGCTTGATTTAGATGAGCTAGATTCCTTAGAAGAATATCAAGCAGAATATTATCAAAGCTTAATGACTAGGGAAGTGGGCGGTCAAGCTAGACATTACCTGTATTATGTATTAAAGGATATCTTACTGCGTAATGCGTTGCGATTTGAGGGTAGTTACTTCTTAAACGTTTATCAAGAAGAGCAGATAAGCGAAATTTATTTTTATCCTAAGTCAGACACGAGCAACGATGAAGTAGCCTACCAAAGTTTTAAGGAGAATCTGCACAAGCTAGAACAAATGGCCTAACGGTTGAGAGCATATGTTATAATGGAAGTGTCAAGTGGGAGTGCTCGTCCAAATTCCGGGCGAATTAGGCTGAAAAAGGGATGGGGTGCCCACTTTTTGGGCGGCGAAAAATAGCTCTTGAGCTTGATTTAACAATGATTTGAGTGGTATGG # Right flank : TATGCAAAAAGCAGCCAAGCTACGATGAATGTAGCCTGGCTGCTTTGTTTATTAGGGTCTTTAATTATTAGAGTTCTTCTACCTTGTCGATGGTGCAAAGGCCGGTTAGGTAGCGTTGATTTTCCCACTCAGTCAAGTGGATGATGCGAGGAGAAACTTCGTGATCGTTTAAGTGACCATGATTTCTGAAATTAGAATGAAGGACATTTTTAACGAGTTCTAGGTTAGTTTCAGCATCCGGTACTAATAAGCGGTATAAGGTCTTAGTCCCAAAGCCGGTGTTACTACCTAAAAAGAATGTTTCGTCATTAAGCACGGCTTCTTTACCAATATAATCAACATCTTTAAAGGGTTTGAGGTAGTAGTCAAAGTATTTCTGCTGACTTACTTTTAGGCCTGGTAAGATTTCGGTTAGACTTTGGCCGCTGAGACTGTAAAAATCAAGTTTAAAGTCAATGCGGACACCAGGTTTAATGAACTCGTATAGATTAGTTTGCTTG # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAGTGATGTATCTCCGCTAATAGGAGTCGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 59682-60576 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOY01000001.1 Ligilactobacillus agilis strain SW282 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 59682 30 100.0 36 .............................. GCTGTTAGTTGGGAACTATATCCATTCATATTTTGA 59748 30 100.0 36 .............................. GAACTTCGGGAAATTCAAGCGGATATGCAGAAAATC 59814 30 100.0 38 .............................. TTGTGCGACTGTATTTTCAATTTCTTCGTCTTCGCTTT 59882 30 100.0 37 .............................. TTATAGATATACCACTTCTTATCTACGTAACTATAAC 59949 30 100.0 36 .............................. AAAGCTTGCACCGAAGCCTTAAAGCGCTCAAACTTA 60015 30 100.0 36 .............................. AATGGCAATTTATAGGGAACTAATCAGACAAACCTT 60081 30 100.0 36 .............................. ACAACTAAGGAAGCTAAGTGAAGACATTGATTATTT 60147 30 100.0 36 .............................. TATCTTAAATTTAATATCTTTGTATACGTAGTATCT 60213 30 100.0 35 .............................. ACCTCCAATGCTGCTATGTGTTCGGCTTCTTCAAA 60278 30 100.0 36 .............................. TGACGAGGGGGGCGCGCCACATGCGCATTTGGAAAG 60344 30 100.0 38 .............................. GCAGTCAATACCTGCAGGCTTAACATAAGCACTTTCAT 60412 30 100.0 37 .............................. GTGATTGGGTCGATGACACCGGTAGCGTTGCTTGCCT 60479 30 96.7 38 .....................G........ AAAGTTATCAAAGAAGAAGACCATACATGCGACCAATT 60547 30 96.7 0 .........................G.... | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 99.5 37 GAATCTATTTAACTTAAGAGGAATGTAAAT # Left flank : ATTAGTGAGGTTGGGCATGCCGAAACTAAGGCGTCTGAGTAGCTTGATTTTGTGGTTGATTTCTTTAATGGGGATATTTGAGTATTTAGCAGACTTAGGAGTAGGAGATTAGCGATATTCAAAACGTAGCTTAGTTTTTTATCTATTGTTAAGCTATTTGATGTTTGAATCAAGTGATTATTATTGGTATTCTTAATGCTTTTAGGGTAAGTATCATCATGCTTCTTGGTTCACTGGACTTTTTCTCATAAGAAAATTTAGCTGCAAAATTGTTGTGGTGAAGTGCATTTTTTCTAGTGACATTTTGTTATAGAGCGCTAGTATCTGTCGACCTAAGATAAGGTGAAATAGTGCTAGTATCGACAGACAATAAAAAGGTTGATATTATAGGCCTTGAAAGAATTTAGGGAAAAAAGTAATATATAGTTGAGAGTGAGATTGGGCGATAGACAGAATATATGTGAAAACTAGTTGATAGTACAGGGTTTTGGGAGTGCAGT # Right flank : TTGCTAAGTCTAGTTTGATAAAAATGGTGAGTGCGATGAGTGTTCTATCGAATGCAGATTTAGAAGCACATGACGTCGTGGTAAAACTGGTCACCTAGCGGGTAGCCACTTTGAATAAGCATTTTGTTAGCTAAACCGTTATGGTGAATTGATTCCAAGTCAAGACTTAGAGAGAATTTTAGGAAGATGTAACGTCTAGAAAGAGTAGCTTAAAAGTATTGGTTTATGCTGAAATTTTCGCGAAAGAAGAATGAGTTGAAAATAATCTAATAATGTTAGATATAGACGCATAGCGCTAATGGAGGTGGAGGAGATGAAACTGTATAAATGGAAAAAAGGCGATGGAAAACAGCTATTAGGGTGTTTAGTAGCTGTTTTAGTTGGTGGCGTTATTGCATTGCTACTCTCGATTTTAAGTGTTACTTCAATTGATGATATAATCATTCCGGTTTTCTTTATTATTGGCTTTATTACCTTTATTGGTGGTATATTTAAATGGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 62526-63219 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOY01000001.1 Ligilactobacillus agilis strain SW282 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 62526 30 100.0 38 .............................. AAGTTAATTTTCTGCCAAAGTTGCAAAGCACAGGTGAG 62594 30 100.0 36 .............................. ATCGTATTTTGCGCCTTATCGTCTGTTATCGTTATC 62660 30 100.0 37 .............................. ACCGCTGCTAACTGTGAGTAAGTGGTAGCCATATCGG 62727 30 100.0 37 .............................. AACAGCGAACATTGTTTTAAACAAAAGCCACAAAATT 62794 30 100.0 36 .............................. TAGGTTATGCTTAGCGATTGCCTCAGCTAACTGTGG 62860 30 100.0 35 .............................. GATGAAGGCTTTATGGTTTACGATGATACAGTTAA 62925 30 100.0 37 .............................. ACAACAGTTGATGAGTGGGTCTTAGCCGATATTGAAG 62992 30 100.0 35 .............................. CCAAAATGGGATGATGAACGATGGGATTAACCCCC 63057 30 100.0 38 .............................. GCACGGGGCTAGATTGCAGAATCAAACTCAAGCTAACA 63125 30 100.0 35 .............................. GTGCTAGTAATACCTTATCAAAATCATGTCTAAGG 63190 30 93.3 0 .....................T......C. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.4 36 GAATTTATTTAACTTAAGAGGAATGTAAAT # Left flank : CATATTGGTGAAATTAGGCATGCTGAAACTAAGGCGTCTGAGTAGCTTAATTTTACGGTCGATTCCTTCAATAGGGCCATTTGAGTATTTAGCAAATTTAGGATTAGCTGCATTCAAAACATGGGCTAGTTTTTTATCCGTTGTTAAAGTAGGGTATTTAAGGTTTGAATTAAGTGATCATTATCGATGTTTTTAACGTTTTTAGGGTAAGCCTCATCACGTTTCTTGGTTCACTGGAATTTTTCCCATAAGAAAATTTAGCTGCAAAATTGTTGTGGTGAAGTGCATTTTTACTAGTGATATTTTGTTATAGAGCGCTAGTATCTGTCGACCTAAGATAAGGTGAAACAGCACTAGTATCGACAGATAACAAAAAGGTTGATATTAAGGGACTTGAAAGAATTTATGGAAAAAAGTAATATGTAATTGAGAGTGAAATTTAGTGATAGACAGAATGTATGTGAAAACTAGTTGGTAGTACGGGGGTTTGGGAGTGCAGT # Right flank : TTATTCAACTCAACGAATTACTAGAATAGAAGTAGCATGAGTTCAAACTAAGATTACAATACAATGACATAGTTTGAAACGTAATGACTATGATTTCTGCAAGTAGTATAAAGGACTAAGTAATTGTCATGATTGTGCCTTAAATAGGTAATTAAGACAATAGCTGGGGTAAGAGGGGGATAAGGTTAAAGATGTTCCTATAATTCCTGTTCATCCTAATTGTGGATGTTAGTTATATCGTTAAGTATCTAGATACAACACTAGTCAAGTATCAGCCTAACTAAAAAATTCCAGAAAAAACAAAAACCTGCTCTAAGTCTGTACAGGCAAGATATGTTGAAGGCAAAGTAGTACAGTACCGTTTATGTAATAATGGAGGATACGTACTTGTTGACTTCGATTTAACCAATTATGGTAATCAAAAACATCATAAAGTAGTTTCCCATAAGTATAAACGAACTATATAAAAGCAAAAATGGTATGAATATAAAAAAGAAGTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 5 68514-70517 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOY01000001.1 Ligilactobacillus agilis strain SW282 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 68514 30 100.0 37 .............................. TAAGACTGGAAAATTAAAGACTAATGCTCAAGATGAA 68581 30 100.0 35 .............................. GGGATTCCGTATTGGTTGTTGAACCAAATAAATTT 68646 30 100.0 35 .............................. CTTTCTGAGTAGCCGCCTTAGCGACCGACATACAG 68711 30 100.0 37 .............................. GTTGTCAAACATGAAATTGTGGAAGCAACTCCAGCAA 68778 30 100.0 35 .............................. TATAGTAAGAATCGTGTTCACCATTTAGTTTTAAT 68843 30 100.0 36 .............................. TTAAATCACTAAAACTTGCTTAATAGGCATTTAATC 68909 30 100.0 36 .............................. TGGATTAACCGCTGCTACTGCGTTTAACGCTTTCTG 68975 30 100.0 35 .............................. AAAAAACAGCTTTGACTAACTTAAACAAATCACTG 69040 30 100.0 35 .............................. GACTCAACGAGGGCTTGGTTTGGAGTTAATAAACC 69105 30 100.0 35 .............................. GCAGCCGCTGAACCAATTTCAGTTAAAGCAGTCGC 69170 30 100.0 36 .............................. AGTTACGAGATGGAGTTTTCTGCAAGCGACATTGGG 69236 30 100.0 37 .............................. CACGGTTGATCAGTACAAGTATCTATGTCGTGAATGC 69303 30 100.0 37 .............................. GAGAAATAAGATTATTATTTTTGACCTAGAATTGACC 69370 30 100.0 37 .............................. AAGTCGAAGTGGCAAAAAAGTGAAAAAAGTGATACAA 69437 30 100.0 36 .............................. CTTTTCCACGTTAGGTTTGACCCATTGGCGGAAGAA 69503 30 100.0 37 .............................. TTAAGGTATCAGCATTACAACGACTAACCAACTTTGG 69570 30 100.0 39 .............................. TTGCCTTATTGATTAGCTCAATACCAGCGTCTTCAGCGT 69639 30 100.0 35 .............................. GTCAAAGCGAAGAACCGCCCTGATTGATAGATTTC 69704 30 100.0 36 .............................. TTATCTAGTAAATCCTTAGCCCAGTCGCGTTTCTCA 69770 30 100.0 38 .............................. AAAGAGAAAGGGATGACATACAATCACTACTTATGGAG 69838 30 100.0 39 .............................. AGCTAAGGATTTTGTGGAACATTTTTCCGCAAGCTTAGC 69907 30 100.0 34 .............................. CCGTTTGTGACTGATATACTGCTATCGCCGACGG 69971 30 100.0 35 .............................. ACATTTTTTAAACGTCTACGCCAAGCACATAAAGG 70036 30 100.0 37 .............................. AGCATCTACCTTTGGCGCGCTTGGAAAATAGTGAAAA 70103 30 100.0 34 .............................. CAGAATTGGCGTGAGCTTTTAGATGAATGTCATG 70167 30 100.0 36 .............................. TTAGGTTCATCGCTATATGTTTGCGCTTTGAGTTCA 70233 30 100.0 36 .............................. TTTGTCGGTTCGGGTACCTTCGTTTTTGACCTTAAC 70299 30 96.7 37 ....C......................... GAGTTTGCTGGAATCTATTTGACTTCGCCGTTTGCTT 70366 30 83.3 23 ....C..............A.....A..GG GGGTGAGTGCTAATGGAGCTAAT CC [70387] Deletion [70419] 70421 30 96.7 37 .............................G CAGGATAGATGCTTTTTTGAGAGAGAATGAGATTACA 70488 30 83.3 0 ............T.......A...AA...A | ========== ====== ====== ====== ============================== ======================================= ================== 31 30 98.7 36 GATTTTATTTAACTTAAGAGGAATGTAAAT # Left flank : GGCGTTTGGGGATAACATAAAGGTCTCCTTGGATAAGGCTTTATGATATCTTAGGACCTTGTAACCGTTGATACATCAAGCTTTATATTTTATAAATGTTTGATAATAATTCTTTTTTAGAAAAAAGTATGCCGGGCATGCTTAACAATTATAATAACTTTCCCTGGTGAGTACCGTATGTTTTAGATATGGTATTTTTTATACTCTCTTTTTATTTTTCGCTAGTCTAAAAAATATGCTGAAGTATGCTTTGAAGGCTTGCAGGGGAGAGTCCATAGTGATGGTTTTAATTCGGAATGCTAACTAAGCTTCAAGTATTATATCTGTCGACCGTAGATAGAGCAAAATGAAGGGGACATCGACAGATAGTGAAAAAGTTGAAATCACTGGGCTTGAAAGAGTTTACAGAAAAAAGTATCATGTAAATATGGGGACAAAAGTAGTGATAGACAGAATGCGCGTGGAAACTAGTTGATAGTACAAAGCTTTTAAAGGGTAGT # Right flank : AGTTACTAAGTTTGTGTACATAACCATGTGTATGTCAATACATTGATTACTAATATATGTAGTCATGATTGTGTACAAATATGACCAACAAGTAATTTATATGCCTAGTTATATCCACATTCTGTATACGCAGATATGTACATTACTAAATCATATACTCATCAACGTACATACAATTGCCTAACTACCTTGTATTTTTGATACAAAGGGTGTATGTACTAATTTAATTTTTTAGTATCTACAAAATTTGAGGTTATCAAGTTAGAACTTTTTTATTAATCGAAGCAAATACAAAATAGCAAATTTTATCTGGCTATAATAGTGGAACAAAAAGAGGAGGAGTTTAAAAGTTACCAAAAATATAGAATATTGTAGAAAACGATGGAATTATAATCAATCAGAAAGTAAAAATGTGGGATTGATGCATTCCAGAACTTATGTTTTAAAACTTGACTAAGAAAGTGCTATCATCTCTGTAACAGGAGGTGAGTTTATGTTGC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 6 185914-188944 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOY01000001.1 Ligilactobacillus agilis strain SW282 1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 185914 30 100.0 37 .............................. ATATAGTTGTACTCACCAGGTTCTAGCTTTTGATTCT 185981 30 100.0 36 .............................. TCCCTCGCTGTTTCTGCTGTTCTCCAGCGAGATCCA 186047 30 100.0 36 .............................. TTGCATTGATAACGTGGCTAGCGCTCTTTTGCACTG 186113 30 100.0 38 .............................. TAACAAAGGACCCATTCTTGACTTCCCCTTTGCGGTCC 186181 30 100.0 36 .............................. ATCTGGCTGATTGAAAACTTGTCATGCGCGTATCCC 186247 30 100.0 38 .............................. CGGCTAGCGAAACAAAAGAGGCTCTGGCAGACGCTAAG 186315 30 100.0 36 .............................. ATTTTTGACACCTCTTTTTTTAGTTCGTTTACAGAA 186381 30 100.0 37 .............................. CAATATGCCGACGGTATCGGGCATGCAATCAACACAG 186448 30 100.0 37 .............................. CTATTCTTTAGCAAATTCCGTCCACCAATTTTAAGTC 186515 30 100.0 35 .............................. ATGTGGTGGTAGTCGATGATTTAGGAACCGAAAGT 186580 30 100.0 37 .............................. CTCTCTGTCTTGCTGGGGGACACCGAATCTAGCGACG 186647 30 100.0 37 .............................. CTGGCTTTTTGATCAGCAAAATTGCCGGGTTCTTTAC 186714 30 100.0 37 .............................. CCAGTTTCGTTACAACCAAGCTAGCCTTATCCGCCGT 186781 30 100.0 37 .............................. AGTATAGCTCCCCCACAGTCGGTATGTGTTCTGTCCT 186848 30 100.0 36 .............................. GAGCCTTGCTTCGTTTTTGGTTGTAAAACCACTCTT 186914 30 100.0 36 .............................. TCCTTTGCCTTTAAGTTTAGACAACGCAAAGACATT 186980 30 100.0 35 .............................. CCACGTCCGCCTAGTTTAACCAGTGCGAACTTAGC 187045 30 100.0 40 .............................. AAAATCCGGCTCGTTAAATTTTTGATTGGCTTGGTTTAGC 187115 30 100.0 36 .............................. TGCATCGCTATTACTAAGCACAGGGGTTTCAGTTCC 187181 30 100.0 36 .............................. TAAGTTTGAAGCTCAAGTTAAAAGCTTGGTTGAAAT 187247 30 100.0 37 .............................. TTCTAGGAGGCTGCTAGATTATGAGTAATTTATTATT 187314 30 100.0 37 .............................. TATCATTAGCTATTTCAGCCTTGCACTTAGTATCTTT 187381 30 100.0 36 .............................. AGCAATGTTCCCAGGGTTGGCTTCACAGCCACACCG 187447 30 100.0 37 .............................. TATGCTTACGCAGCTAAAGAAGATAAGTTCACCTTTA 187514 30 100.0 36 .............................. AAAGCGTTACGTTTCCGTTCAGATACTCGTTTCGGT 187580 30 100.0 36 .............................. GGTAGGAAACTTAATCTTGTTTAGCTGCTGCCTTGC 187646 30 100.0 39 .............................. TTCTGTTGTAGCTTTTATTTGATTACGGATATCTGCTTC 187715 30 100.0 36 .............................. ACGTTGGAAAATCGCACACTAACAATAACTAATAAC 187781 30 100.0 37 .............................. AATCAGCTTAGAAAGCAAGGCAAGAAGGTATCATACG 187848 30 100.0 36 .............................. AGCTTAAATCGTAAAGATTGCTCGGTATTACGGATA 187914 30 100.0 35 .............................. GGTTCTTTAAATTTATTTACGTACTGCCTAATCAA 187979 30 100.0 35 .............................. AAACGCCATTTCGTATGCGTCTGACCCTTCAAAAT 188044 30 100.0 38 .............................. GATAAATCGTATCTCTGAGATAACACTCAGTGATAATC 188112 30 100.0 36 .............................. TTGGTCTAAATGTTCAACCGCTACTAGCGTAAATTT 188178 30 100.0 42 .............................. CCTATTGAAAATCGGTAGGAGGTATTTTTTATCAGACAGCAA 188250 30 100.0 37 .............................. AAGATTGAAACGTAAGTTTAGAGAACATGGAGCGGTC 188317 30 100.0 37 .............................. TGACTTCTCATAGGGCAAAAAATGGTTTGAGCGATTC 188384 30 100.0 37 .............................. ATTGATGACGAGCGCTATGCACAACGTGAAAATCAAA 188451 30 100.0 35 .............................. AATATGCTATTGTTTCTGATAAGAACCGTCTTGTT 188516 30 100.0 37 .............................. CTGTCTGGGAAGGGGTTTAAAGAAGTATATCAAACTA 188583 30 100.0 37 .............................. TATCTTCCTTACAACATTATACTAACATATATGAAAG 188650 30 100.0 38 .............................. GGATATTATGGCTATTTAAACGTAGCTCCAGGAAATGC 188718 30 100.0 35 .............................. TCAATTACGGCCTTGATATGCTCTTGATATTCCTG 188783 30 100.0 37 .............................. GACACTAAACTAAAAGTGTTGGGGTGTTTTTTTACAA 188850 30 100.0 35 .............................. AGGAATGAACCTGGACAGGTTTTGCCAACGGATTC 188915 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 46 30 100.0 37 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TACCAACCTTTTAAACTATGGTGGTGATTTTAAGTGTATATAATTTTAGTCTATGATATTGCATTAGATCAAAATGGTGCTAAAGTTTTAAGGCATGTTTTTAAAATTTGTAAAAAATACCTTAGTCATGTTCAAAAATCTGTGTTTGAAGGGGAGCTTACTAAATCACAGTTAAAGAAATTAACGATTGAATTAAGGAAATGGATTAGAGATGATAAAGACTCTGTAATTATTTTTAAAAATCGTAATAAGAAATGGCTAGATAAACAGTTTTTAGGAATGGATATGTCTGATGAAACTTCAAACTTTTTCTAATTATTTATCTGTCGACCATAGATAAAGCAAATTAGGGGTAACATCGACAGATGATTAAAAGCCCGAAATATCAAGGGTTGAAAGAAAATGAAGGAGAAGGTAATATATGACTGTAGGTGTAAATAAGGTGATAGACAGAATATATGGATTAAGTTATTGATAATACAAGGCTTTTAAGGTGTAGT # Right flank : TAGGGCTCTATTCAGAAGCCTATCTGTTGTTTTTTAAATTTAACTAAAAAAGGCGCCAACTTAGATTTCAGAAGTTAGCACCTTAAATAAGTTCTATTTTTCTTGGGAATCTTTGACGAAGTAAGATAAGCAGTTAATAACGATAAAACCGCCAATCATTGGAATTAAGCCGGAAAGCTTAGCATCAAAGGTGTAGCCACTTAAAGCGGAAACGATGTAGCCTAAGACTTCACCGTAGATGAATCCCCAAAATAAAATTGTTAATTGTTTTCCCATCATGAGCACCTCACAATATATAAGTAGTTTAACACATTTGTCCTAAAAAAGCATAAGAAAATTTTTACGAGAAATTTGTTATAATAACCTTAGTAGTTAAATGAGTAAAGGGCAAAGGAAGGTGAGAGAATGTTTTCACCCTTACAGGTAATTAGTTCTTATAGTTTGTTGCAATCTGGCTTGAGAATCGAAGATTATGTTCAAGCGGCTAAAAAATTAGGTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 7 273007-271269 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJOY01000001.1 Ligilactobacillus agilis strain SW282 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 273006 29 96.6 32 ............................C ATCGAACAGGTTAGCTAGCTGAGTAACGACGG 272945 29 100.0 32 ............................. TTATCTTTGTATACGTTTGGGCAGTTATGGGA 272884 29 96.6 32 ............................C ACGTTAAGCCCCGCTAGTTGGTGCTAGTCTGA 272823 29 100.0 32 ............................. TGCTTTTCGCGTTCAACTTCTGAATATGAAAA 272762 29 100.0 32 ............................. GGTTGGCTTGGGGTACACGAAGGTATTCATGG 272701 29 100.0 32 ............................. AAGCGTTGTTGGTGGATTAATTGCTGTGCTTT 272640 29 100.0 32 ............................. TTTCCAGTCTTAGGGTCAAGCACCATCGCATT 272579 29 96.6 32 ............................C TAGCACAGTTCGTCAAGCGAGCGAGTTAAGCG 272518 29 100.0 32 ............................. TGTGAAGGTTGAGTACTTAGCCCCATCTTGGT 272457 29 100.0 32 ............................. AGTCCGCAGTGGCTTTGGGAATGGACACATGA 272396 29 100.0 33 ............................. GAAAATTAAAAAGATTGTAAACGGGAAGTTGTA 272334 29 100.0 32 ............................. TACAACTTGAGCTGATAATGGTGATTGACCGT 272273 29 100.0 32 ............................. GTCGGCTATCCTAACAAGGTGAAGAATCGAAT 272212 29 96.6 33 ............................C ACCCGACAATTTACTTCATTAAAGGTCTTAGAA 272150 29 100.0 32 ............................. GCGCTAAAGCCGGTCAGAAAAGATATGCAAGA 272089 29 100.0 32 ............................. ATGAATGAATTAATTATATCACCAAAAATCGA 272028 29 100.0 32 ............................. TATTCGTGCTACAAGTAATGTTCTACTCCTAT 271967 29 100.0 31 ............................. CGCAGTCGGATAAATTGGAAAGAGAGGTTGC 271907 29 100.0 32 ............................. ATTAGAAACTCTCCGGGTATGTCTGGTAAGAT 271846 29 100.0 32 ............................. ACCGTTCCAAATTGCGCCGGCTTCACTTTTAA 271785 29 96.6 32 ............................G GTGGTAGCATTAATCCTAATTTTTGGTTCAAG 271724 29 96.6 32 ..............G.............. TCAACGGTAGCGTCGAAGTATGCTAGTCAGCT 271663 29 96.6 32 ..............G.............. TGCCGCTACAATCCCGTTCCAAATAGTTTGTG 271602 29 96.6 32 ..............G.............. ATACCTCCCACCCACCGCTTTAATTCTAGTAA 271541 29 100.0 32 ............................. CAATGTGGACGCTGACGGTTGGCGGAAGTTAG 271480 29 100.0 32 ............................. TCTGGAACAAGCAAACAGGACCCTCAACATTT 271419 29 100.0 32 ............................. TCTGGAACAAGCAAACAGGACCCTCAACATTT 271358 29 100.0 32 ............................. ACTTCTGAAATCGACTCAGTGCAACGGTATCA 271297 29 82.8 0 ..............G.......C...ATG | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.5 32 CTTCTCCCCACACTAGTGGGGGTAATCCT # Left flank : TGTACGCAGAATAGCATTATTTCAATCAGTGCCGTACGTAAAGTTAGTAAAGAGTATAAAACTTTTAATCGGTACATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACGGGTATTACAGATACATTATTAGTCAACGAAGGTGTTGAACTGATAGATGGACTTAAGGATTTAATAAGTTTTTTAAGAAAATCAATTGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCGTGCAAGCAAGTAGGCTTAGACTTACCTGCTAATCGAGTGGTTGACTTGGCAATGCTCGTAAAAAAAGATAATGAATTTTTAGATAATTATCGCTTTGCAACAGTTTTAAAAGAATATGAGGTTGATAATACTCATCCTCATAATTCTCTGTCCGATTCTATAGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGGTTGCTTACGGATTTAAAAATACCGGTTTATCAACGTTTTTTTAGT # Right flank : AATTAAGCCAATAATTCATTGGTAAACATACCATAATGAAATGTATGTAATTATTTTCCTAATTCCTTATACTACTAATATGGACATAGTATATGTTGAGTCTAAGCCGTTACCAATACATAAGTTCTATTTCTAGGACCAAAAACAGAACTAGCAAATGGAGACTAACCACTTGCATCGTGTGTGATGGTTATAGCGAAAAATACCCTCAAATAACCTATATTTGGCTTATTGTTTGATTCCTAAACATTTGTTAAAATGTAGGCAACAAGGGAAGTTGATGGAAATAATATTAGTAGCTAAATTGAGTTGAAGGATAATGGTTAAAGATAGTTAACCACTTTTAGTAACGAGCTGTTAGCGCAAGTTTTAGCATTTTTTAAAAGCAGTTAGGAGGAAAAATAGATGGATAGTGTAAAGTATCAACCAAGCCGGCATATTATGGATTTTCATTTGGCAGGTTTTGCTTACTGTGATGGGTTAGATGTAATTGAGGAATT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTAGTGGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.40,-11.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //