Array 1 68632-66032 **** Predicted by CRISPRDetect 2.4 *** >NZ_QROL01000009.1 Parabacteroides merdae strain AF38-4 AF38-4.Scaf9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 68631 32 100.0 35 ................................ AAAAGTTGGCATTACTTGTTAATTCAATAGATCGC 68564 32 100.0 33 ................................ CCTTGTTATGTAAGAATAAAGTATTACATTTGT 68499 32 100.0 33 ................................ AGGTTTAAAATAGGTGATGATTTCGCCTATAGC 68434 32 100.0 34 ................................ TACAATTTGCGCCGTTACTTTCCCTTGCAAACTC 68368 32 100.0 33 ................................ CTTTAGCTTGGACTTTACATTTCTGTCTGTAAT 68303 32 100.0 34 ................................ GTCAACCTGGTAATAAGACCACGCCTTTTGTATA 68237 32 100.0 35 ................................ AAGATAACGCTGATAAGCGTTGACATTACGAAAAT 68170 32 100.0 32 ................................ ACGCTTGAAGGGATCGCAGAATACATCCGTAT 68106 32 96.9 35 ................A............... CCTTTAATACGACATACACACCACTACCTTGAAGA 68039 32 100.0 35 ................................ ACGGCGACGAGCCTGCATAATACGGCGTTTAGCAG 67972 32 100.0 34 ................................ TGCCAATTAGAATCAACACGAGAAACGGGTATGC 67906 32 100.0 34 ................................ TTAACAATCGCCGTTTTGATCTCGAGTGTGAAGA 67840 32 100.0 34 ................................ CTCTGGTCAGAGCCCTATGGATCGCGTTTATATG 67774 32 100.0 34 ................................ AATGAATATATTTATACTTTAACAGAACGTTTGG 67708 32 100.0 34 ................................ CTTTAATTGATGTAGAAACGAAGATGGCTTTAAA 67642 32 100.0 33 ................................ AGAAACAATGCTACTGTAGATAAAGTAAGAATT 67577 32 100.0 34 ................................ TAATGGGGGAACCGTTTTACAAACAGCCAATATA 67511 32 100.0 33 ................................ AAGAGAAGGATTGCCTAAAATCTCATCTCTACG 67446 32 100.0 34 ................................ ACGACTGATTTAGGCCGCATTACTCCGGTATTTA 67380 32 100.0 33 ................................ ATTAAAATACTCACGAGATTTTATCCAATTACC 67315 32 100.0 34 ................................ AATACTATACGGATGAGTTTTGTGACCCCTTTAA 67249 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 67184 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 67117 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 67051 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 66986 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 66919 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 66854 32 100.0 34 ................................ ATGGAAAAGAGTAGGGAGGTCGAAAGCGTGATAT 66788 32 100.0 34 ................................ AGGAACGGGTAAACATACTTGAATATGCCGCTTT 66722 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 66657 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 66590 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 66525 32 100.0 33 ................................ AAGGTGCTGCCTATGCTAAAACTCTCGCTGAGA 66460 32 100.0 35 ................................ GACTGTCTGAGTAATAGGATTAACAATAATGTCAC 66393 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 66325 32 100.0 34 ................................ AAGGTCAAAACGCTTATTATTAAGTATAGCGGTA 66259 32 100.0 32 ................................ TGACGGTAATTTAAAGGACGGTCTTACCGTTT 66195 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 66129 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 66063 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 40 32 99.5 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 76513-74311 **** Predicted by CRISPRDetect 2.4 *** >NZ_QROL01000009.1 Parabacteroides merdae strain AF38-4 AF38-4.Scaf9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 76512 32 100.0 33 ................................ CTCCATGCCGGATAACAAAACCTTTTGCGGAAT 76447 32 100.0 35 ................................ CTCATGTACAGAACAGGGAATTAGGATTCCGCTTT 76380 32 100.0 33 ................................ TACTGATTCCGTTTTTTTACCTGACAATTTTGA 76315 32 100.0 33 ................................ AACTTCGAGCAAACAATATCCTGAAAGCAGAAA 76250 32 100.0 32 ................................ TAAACATCCTGATGTTAATAGAAAGGATAAAG 76186 32 100.0 34 ................................ AATGTATCGTAACTATCCTATACACTTGGATGAT 76120 32 100.0 33 ................................ CTCCTGCTGATGTTGCTGGTCCAATTATGAGTA 76055 32 100.0 33 ................................ CCAAAGAGTGTTACGATCGGCGTCAACCTTTAA 75990 32 100.0 35 ................................ TGCTGATAATACCGAAGAGTATCAACCGCCTTTTA 75923 32 100.0 34 ................................ CGCCATGGCGCAGGAGTTTTTTCGCAATGCCGCC 75857 32 100.0 34 ................................ ACGTATACGGCACTAGGTGCGGCTACAAATCATA 75791 32 100.0 33 ................................ TTATAAATAACGTGGAGGCCAGTTTGGAAAGCA 75726 32 100.0 33 ................................ CGTATTTTGCGACGAAGAAAGTATTGTCATGGG 75661 32 100.0 34 ................................ CATTATTGATGCGGTTGTCTCGGAATATCAGCTT 75595 32 100.0 33 ................................ GGTAAAGGAGATGAAGCTTTAGGTGGCAAAAAT 75530 32 100.0 35 ................................ AGGCAAGCTTTTTTACATGCCTATAGATTCATGGG 75463 32 100.0 36 ................................ GATGATTGCTCATTCTTATCCCCTCATGCCATCAGT 75395 32 100.0 34 ................................ CTTATAGCTAAATCCACGGAATTGATTAAGCTCA 75329 32 100.0 34 ................................ CTTAATGGTAAAAAGACATATAATCGTTGGATAA 75263 32 100.0 33 ................................ GCTATCTCGCGTGTGGCGAGTATGGCTCTAAAA 75198 32 100.0 33 ................................ TTAATCGTACTACCGCTATTCTTAACAATCGCC 75133 32 100.0 33 ................................ ATCTTAGTTTGGATCGGAAACATCATCGGCATG 75068 32 100.0 34 ................................ TTGAAAAAACATTTCGCAAACAACTGAAAAAGAT 75002 32 100.0 34 ................................ AACAGGATCAAAAGTATGATGACGCTCAGCGTAT 74936 32 100.0 34 ................................ ATGAAGTTGCAAATGTTACCTTAGCATTATAGAA 74870 32 100.0 32 ................................ TGTTATGTCGCGTTTAAAGGATGCTGGTTTAA 74806 32 100.0 32 ................................ TAAAATAGCTAAAAACAACATTTGGGATATGA 74742 32 100.0 34 ................................ TAATTCGAATCGTAATTATGGTGGATCAGCTAAA 74676 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 74609 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 74545 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 74478 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 74413 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 74342 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 34 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //