Array 1 1588325-1589694 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022491.1 Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1588325 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 1588386 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 1588447 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 1588508 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 1588569 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 1588630 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 1588691 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 1588752 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 1588813 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 1588874 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 1588935 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 1588996 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 1589057 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 1589118 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 1589179 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 1589240 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 1589301 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 1589362 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 1589423 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 1589484 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 1589545 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 1589606 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 1589667 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1605954-1606777 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022491.1 Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1605954 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 1606016 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 1606077 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 1606138 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 1606199 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 1606260 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 1606321 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 1606382 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 1606443 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 1606504 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 1606565 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 1606626 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 1606687 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1606748 29 96.6 0 ............T................ | A [1606775] ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //