Array 1 35451-36495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQQ010000024.1 Anaerostipes hadrus strain MSK.11.20 NODE_24_length_41655_cov_179.575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 35451 30 96.7 35 .........T.................... TCCTACATATTTATTATGTCACTTTTAGATTTTAC 35516 30 93.3 35 ...............A.G............ TTTAATTTGCGTATCCCTTCACGTATCGCCACTGA 35581 30 83.3 27 .........T.....A.G.C.........A ATAGTGGCAAGCTGCTCTGCCTGAAGA Deletion [35638] 35638 30 86.7 33 .........T.....AAG............ TCGGAAAAGTGCGAGGCAAAGAAGCATCTAGTA 35701 30 90.0 27 ........G......A.G............ TGTTTTATGGGATTGTACGAAAATTGC Deletion [35758] 35758 30 86.7 36 .........T..T..A.G............ TAAGTTAACTCTTTTCTAAAAAAATTTATTCTTACA 35824 30 100.0 34 .............................. GTGGACACACGAGCGTAAATAACGGCATAAAGAG 35888 30 93.3 36 ................TG............ AAATTTAATTAGTTCAAAGTAAATATGATGGATGAG 35954 30 86.7 35 ...............ATT.......T.... TGGGCACGAAATATATAGTTTCCATAATCTATACC 36019 30 90.0 37 A...........T....G............ AACACACTGCAGCTAATTCTTTAAAGATTCCCATTGC 36086 30 86.7 38 ...............ATG.C.......... CTTGGATTGGAAGTGAGTGCATAATGCCGCCAGAGGTA 36154 30 90.0 34 .........T.....A.G............ GAACATCTACAATCAAGCAATACACCGGATAACA 36218 30 93.3 36 ................AG............ TATTTATTTTGAAGCAAACAACCGTCTGAAAGGAGC 36284 30 90.0 36 ...............ATG............ TGTGGGATCTCAAGGGCTTCTGTTTACAAGATTCTG 36350 30 100.0 25 .............................. TATAGTACCTCCATAACAACTATCA Deletion [36405] 36405 30 90.0 31 .........T....CA.............. TAAATCCCTGGCGTAGCGACGTAATAAATCT 36466 30 86.7 0 ...............A.G....G......A | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 90.8 34 GTTGAATAACAACATGGAATGTATTGAAAT # Left flank : AAAAATTAGCGGATCATATGATTCATAGACGCTGTATTTACATTCCGTATTTAGGAAAGAATGATCATCCTGCGGATATTCATGATGTTTCATACGTTGAAATTTCTGAAAACAAAGAGTTAGGTTGCATGATCAACAGTTTAAGCCCTTGTGATGGAATTAACTTCGATATGTCAGAGGCTACATTTAAATATGAAGAGTTTCTACCGATCTGTCTGGACTCAGAGCTTAATCAACATGAATTACAGAAATTTATTTTAACAGATGCGATCGCAGAAGGTGCCAAAATGGCTGTTTATAAAGCAGAAGATAAAAATATCGTTTTTTATTAAAAAAGAATTACCAAGTGATTTTTTGAAAAAGTCTGTCAAATGGCGTAAATACGTGGTTTTTTACAAATAGATGATTTTCAATGGAATGGTTGGTAAAATGTTGGAGAAATGGCTTAAGATCGTGATTTATAGAGATCAGTAAGATACAAGAATGACGGTTTTTCGTTG # Right flank : AAAATAATCGCAAAATTTTACGATTGAATTTGTGATTAAAAATACGCATAATCTCATTTTTATATGTGAAACTTATTTTCCTTTTCATATCTCATATTTGTTATGTAAAAACATGACGAATAGAGAAATAAGGAGGATACGAACATGACAAAAGTAGATAGCCCAATCAAATTAGAGAGTTTGATCTTAGCAGTCACTGGAATTCTTTTATATCATCTTAGTATGACATCTTTTGCATTAACAATGATTTTCTTAATAGCAGGAATCGTAGAATTATTTGATGATTTTACTTCAGGTGAAGATACCGCTTTTTACAGTTTCTTTTTTGTAAGAATTCTGAAATTAAGAGGATTTGACTGTGTTGGTGTTGCAAATGACGAGAATGATACATATTTTTTGTATCAGGATCAGACAAGAAAAAAACTATATTGTTTTAAACAGGAACCAGAAGAATTTGGACCCTATGATAAACGATATGTAGGTATGATTAAAAATCAGGC # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.54, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAACAACATGGAATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [19-19] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 5426-5718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIQQ010000045.1 Anaerostipes hadrus strain MSK.11.20 NODE_45_length_17205_cov_197.188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5426 30 100.0 36 .............................. AAATTCTCGATTTACGCATATTTTTTATGCACATTG 5492 30 100.0 35 .............................. TATAGAAAATCCGATTGAAATTTTTTTTGATCTTA 5557 30 100.0 35 .............................. TTGTTCTTCACTCTTTTTTTAAATAATTTTTCTCT 5622 30 96.7 37 ...............G.............. AACACACCGCAGCTAATTCTTTAAAGATTCCCATTGC 5689 30 83.3 0 A........................TTTT. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 96.0 36 GTTGAATAATAACATAGGATGTATTGAAAT # Left flank : AAATAGAGGACTTGTAAACCGAACAGGATTAGCTGTTTTAAGACATACAAGAACAGCTTCTACTTTAACAGAATTTGGATTTATTACGAACAAAGCAGAAGCAGCATCTATGAAAGCAAACACAGACAAATATGGAAAAGCAATGTTTAATAGTGTTGTAAAAATGTTTCAAACAAACCAATCAAAAAGATAAGAATCATAAAAGAGGAACAGGTATAAATGCCAGTTCTTCTTTTTTTTGACCATTTTGGCGAACTCAACGAAATGGTCAGTTGCATTTTTTATATGTGATTTTTTTTCTGATGAAAATCTCTCATATTTATAATAGAAGAAAAATTCTTACCAAGTGATTTTTTGAAAAAGTCTGTCAAATGGCGTAAATACGTGGTTTCTTACGAATAGCTGATTTTCAATGGAATGGTTGGTAAAATGTTGGAAAAATGGCTTAAGATCGTGATTTATAGAGATCAGTAAGATACAAAAATGACGGTTTTTCGTTG # Right flank : TATATGTGAAAATTCTTTCTTAAAATTTCTCTCATATTTATTATGAAAAAAAAACAACACAGGCAAAAAAGGAGAGTATATATGTTACAAGATAATATTATTTTAAAAAAAGTAATCGTTCATGTGGCTCAGCCATCCATTGGAAAATATAATGCATCCGAAGAATGTATTGACTTGGGAACAGATTTTACGGAATTTTTAAAGAAGCAGATAGAAAAGATGACAGAATCTGATGATGTTGTAAAAATCGATCTGAATCATGCTGCAATTACCATTAATTTGGATAATTTTGAAAAAAATACAGCCAAATTAGGAGAAGAACTCTATGATATCTGTTGTGATAGTGTCAAAATCCCAGATGCAGATTTAGTATTCCTTACTTTTACTAGTGAAGGAACTGATTATTTTGGAATGTTGAAAATGGATTATAAACCATTCTATGGACATCAGAAAGGAAGCACAGAGGTTGTCACAAAACAGGTTATGACTAATACATGTAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAATAACATAGGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //