Array 1 1689021-1689537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOJ010000001.1 Roseburia inulinivorans DSM 16841 strain FDAARGOS_1587 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 1689021 29 100.0 40 ............................. AACCTTGTGCTCGCGTATCCGTTTTCGTTTGAAAAATAAT 1689090 29 100.0 49 ............................. TTTCCATCTGGAAAGAACTTCCATGTGTGATTCCCCATCTTTGTCATAG 1689168 29 100.0 35 ............................. AATACTTTAAATCCACGTACAGGTGTGTTCGTTTT 1689232 29 100.0 38 ............................. ATCCATCCTTATCATCCCACTCATACCGAAGCGTACAT 1689299 29 100.0 34 ............................. AAAACAGCGACAGCTGTGATCTCGTCATCACCGA 1689362 29 100.0 41 ............................. ATGCTCAAATTTTTGTAATTATGCGCTTCGTCCACCATGAT 1689432 29 100.0 47 ............................. GATAAAATACACAAGCAATCTTCTCTACTTAATCCATTATTTTCTAA 1689508 29 93.1 0 ..........................G.G | T [1689533] ========== ====== ====== ====== ============================= ================================================= ================== 8 29 99.1 41 GTTTTACCTTACCTATGAGGAATTGACAC # Left flank : CTTTGGAATAGCCCCGTGTTCGCCGATTCGGATTTCAAAAGTAGAAAATGAAAATTGCAGAAAATTTGTTACAAAATATCAGGGAAGTTATATTACAGCATGGTTTGGAAAGTATGATCTTTCCGGTCAGCGAAAATATCTGGATTTTCTGTATCAGACAGGACTTGGTGCAAAAAATGCACAGGGGTTCGGAATGTTTGAACTTTTGTAAAAAATTTCTAAAAAGTCCGTCGACCTCAAATGCCGTATTTATGCGGATTCCAGAGGATAAAACAAAGAAAAAACTGTTGAAAAGGACTGTAAATGGAAGAAATCAAGTAAAAAAGTCCGTCGATGTCTGCGCGAGAAACAAAGAAATTCTGAAAAACGTCAGAAATGATGAGTTTATAAGGGGTTTCAAGAAAAACCACAAAAATAGGTCGACGGACTTTTTCAATAAAAATAGCTTGATTTGAGAAGAAATTGCGAGTATTGTAATTATAACGACTGAAAATACAGTT # Right flank : GTCAGTATTCATGTATAGGAGGATTACATGGTTTTAGAAGATGTTTTTTCAGATGAAAATCTGGAGGAGGCATTCGAATCGTTTGCGGATAAGCATGATAGCCATGGGCTGGATGGGGTAAAATTATCAGAATTACGTGCTTATTGGGAGACAAACGGGAAGAAGATAAAGGAGTCTATTTTTAATGGTACATATAAAGTAGGAGCTGTTGAACAAAGGCAGATTGTGAATCGTAAGGGTAAGAAAAGAACGATTTCGCTTATGAATTCGATTGACAGGTTTATTTTCCGTGCTTTATATCAAAAGATGGCAAGTGAGTGGGAGAAACAATTTTCACAGTATTCATATGCATATCAAAACAATAAAGGTGTGCTAACAGCGGTGGAACAGGCAGCAAAGTATATGGAAGAAGGAAAAGACTGGAGTGTTGAATTAGATATTCAGAATTTTTTTGATAATATTAATCATTCGATTATTATTTCAAAATTAAAGGCTGGGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACCTTACCTATGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1692010-1692188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOJ010000001.1 Roseburia inulinivorans DSM 16841 strain FDAARGOS_1587 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================== ================== 1692010 30 100.0 33 .............................. TCTCTGTTCTTTAGACATTTCCTTCATGTTTTT 1692073 30 100.0 56 .............................. GTATAGAGTTAAGATACCTCTACCATTATTACAGGTTTTGTATCATTTCCAGAGCC 1692159 30 90.0 0 ........................CA...T | ========== ====== ====== ====== ============================== ======================================================== ================== 3 30 96.7 45 TGTTTTACCTTACCTATGAGGAATTGACAC # Left flank : AGAAATAACAAAGTACTAAAAATATGCAGAAAATATCTCGTACACGTTCAGAAATCCGTTTTTGAAGGGAATATTACAGAAGCAAAATTAAGGAAGTTAAAATCGGAATTAAAGCGCACAACAAAAACGGATGAGGATAGTGTTATTATTTATCGGTTTGATTCTTTAAAATATTCAAGCAAGGAAGTTTTGGGAGAGTATAGTCCGGAAGAACATTTCTTATAAAAGTCCGTCGACCTCTAATGCTGTATTTATACGGATTCCGGAGGATAAAACAAAGGTTGAACTGCAAAAAAGGGCTATAAATCATGAAAAAAAACAAAAAAGTCCGTCGATGTCAGCACGCAATTTGAAAAAAGCGTGAAAAGTGCTTGAAAATCTGTTTTTATAAGGAATTCATCAAAAATGATAATTGTGTGGTCGACGGACTTTTTTGATAAAAATAGTTTGATTTGCGAAGAAATTACGAGTATTGTAATTATAACGACTGAAAATACAGT # Right flank : TAACCGCGCAAACATTGTCCGAAGACATTTCCTGCAAAAAATTAGGAAATGTCTTTTTATGATACTGAAAATCCTTGGCAGTTTTGAAAAGATGCTTATAATAATAGTTAAGCAATGGAAAAAAGTAGAAGACATGGGAGAAGGCTTATGGTGAATATTTTATGTGCGAGAATCCGGTATATTGTTCCATTTATGTTTTGCAGTGAGACATCTTACGATAAGCTGGTAGAGGAGATTGCAAAAAATCCTTTGTGGAACATCCAGAAGATGCATGAGCAGGAAGCGGAGCAGGATTTGTATCAGATGATAGCAGACTGCTTTGAGATGGACGAAAAACAGAATAATATCGGCTGTTCATTGCACTATTGTATGCCTGGAAACAATATTTTGGAGATTAATTATACAAAATTTAAGAAAGACTTTGTCGTGTCTATAACGGATTTGGGCTTGTACTTATTTCGTTCAGGCGTTGGTTTTCTGTGGTATGAGATTTCACTTCC # Questionable array : NO Score: 4.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.79, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTACCTTACCTATGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 2546915-2548968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOJ010000001.1 Roseburia inulinivorans DSM 16841 strain FDAARGOS_1587 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 2546915 36 100.0 29 .................................... CTTTGCACTGGTTTGTGATTCCTCTTAAT 2546980 36 100.0 30 .................................... TTGTTCCATTGATAAAGATGTAACGTTAAG 2547046 36 100.0 30 .................................... TTTATGCTTAGACGTTAATTCAGCAGAGCC 2547112 36 100.0 30 .................................... CATGTGCGAGAAGGAACCGTTCCGTCTTCG 2547178 36 100.0 29 .................................... CTTCGGCTTCGAAGAAGACGCGGAAATCA 2547243 36 100.0 29 .................................... CGTCAATATCGGAAAGAATTGCACGGGTC 2547308 36 100.0 30 .................................... TAGACATCTATAGACATCTACCACGCTTTA 2547374 36 100.0 30 .................................... TACCCCCTTTCTTAAATCAGACACATGACC 2547440 36 100.0 29 .................................... GAACAATGGCAGCAATCAGACCATGCACC 2547505 36 100.0 30 .................................... AAATCATAGAGGAGGTCGAATCTGTTCTGT 2547571 36 100.0 30 .................................... ATTACCACATCGAATATGTTGAGCTTGTGG 2547637 36 100.0 30 .................................... TCGCCGATTGTTCTGACCATCTTCTTTCCG 2547703 36 100.0 30 .................................... AAGGGAGTGAAGCGGGGAAAGAGGAAGCAG 2547769 36 100.0 30 .................................... TTCCTCTGCCCTGTCAAGCCTTACGCCCCT 2547835 36 100.0 30 .................................... CAAAGAAAACAAAGACGAGAGATAAGATCC 2547901 36 100.0 30 .................................... TGAACACATAGTACAGGTGCAGACCGTTCC 2547967 36 100.0 30 .................................... AACAAAGGAGAGTCCTATGGCTATGGGCGT 2548033 36 100.0 30 .................................... CTCTATACAAACCAGATGCATTCGGACTAT 2548099 36 100.0 30 .................................... TGGTTCTGCCAATCATCCGGCCGTTATATG 2548165 36 100.0 30 .................................... TGGATGCACTCAAAGAAGTCCGGCATATCT 2548231 36 100.0 30 .................................... GAAAATACATTGAAGTAACAACCAGAAATT 2548297 36 100.0 73 .................................... AGGGAACGGAAAACCCTGCATCAGAGGGCGAAACCCAAGCAATCCATCAGACAGAACCACAGGCGCACCAACG 2548406 36 100.0 30 .................................... AAGAACAACGCACCGCAGACCGGACCAAGG 2548472 36 100.0 30 .................................... GTTAGCCATATGTTAGGACACGCAAGCATC 2548538 36 100.0 29 .................................... CAAAATTCGGGGAGAGTATAGGAACCGCC 2548603 36 100.0 30 .................................... AAAATGTACTTTTCCGCTACCTCTGTAAAT 2548669 36 100.0 30 .................................... GAAAAACCCGCGACCGTTGGGACATTATGA 2548735 36 100.0 30 .................................... CCGATTATATCGGAATTATTCAGTTTTATA 2548801 36 100.0 30 .................................... ACCTGTGTGGCTGTGTTCTCTGCGCCTCCT 2548867 36 100.0 30 .................................... GGTGCTGCTTCCTTGTAGTCATCTGTTGTG 2548933 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 31 36 100.0 31 GCTGTAGTTCCCGGTTATTACTTGGTATGTTATAAT # Left flank : CATTTATGCAAACTGGTAACAGATGTCAGATTTGATCTGGATGACTATGCAAGAGATGACTTTTTCAGGGCATACACAACGGATTTATCTCTTTTGATGGCGATGAAAGATTTTTCATTAAAGCAACATATCGTAGAAAATACGTTATTCGGAAACTCAAAAGGCGGTATATATGAATGTGCCATAGCAGATGCACTTTACAAGAAAGGATATCCGTTATATTTCTATAAAAATGAGACAACCAAGAGAAAAATTGATGTTATGATCCAAAAAGATGGTGTGGTAGTTCCGATTGAGGTTAAAAGTGGAAATACGCGGGCTAATTCCTTAAAATCTATTTTGAAAATGAATGCAGATATTCCTTATGGATACAAGTTTGTTGATGGTAATATAGGTGTAAGTGATGATGGTATCATTACATTACCGTTATATATGATCGCGTTTATTTAAAGTATTATTTTTTTAAAAATATTATCACTGAATTCCCATAATACATTGTA # Right flank : TAGGGAACGGAAAACCCTGCATAATCCAAATGATTATGCAGGGTTTTAACTTTCAAAAAAAAATAAAAAATGATTATAGTAGACGGAAAAAACACATTTTAAGAAAAAATCAAGAAATATGAAAAGCATTTTCCACTATATCCCTAAACAAAGCCGTACTTGCCTTACTCGGGCATACGGCTTTTCGCTTTATATCTATGCTACCTATTAAAAGACCTTATTTTGATACTCGTTTTTAATAGCGGAAATGTTCTAAGCAATTCATTATTGAATATTTTCGATGTGTAACCATAGTTCTAACTTCTGTGGTTTAAATATTTAAATAGCAATTTTTTGTTGATTCAAATTAAAATGTACAAATTATTGGACAGTTAAAGTGCTATATCTTCAGTAATGAAAACCTAAAATGAAAAATTAAACCTGTACTTTGACAACTGAAAATGGCTATAAAAGGTCTAGTTTACTTTTTCTACAGCCCTTTCCAAGGCATGATATATTGG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTAGTTCCCGGTTATTACTTGGTATGTTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 4 2559343-2560761 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOJ010000001.1 Roseburia inulinivorans DSM 16841 strain FDAARGOS_1587 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2559343 32 100.0 34 ................................ AAATCCGGTATCGTAGGAATTACGGTAAATAACT 2559409 32 100.0 34 ................................ TATCACCGGTTCATCCGCTGCGGAAGTTAACCGC 2559475 32 100.0 34 ................................ TTCCAACTGTCATAAGCCGATTTGTTCAATGCAA 2559541 32 100.0 33 ................................ AATCCTGAAACAGAATGAAGCTGTCAACAGCGT 2559606 32 100.0 35 ................................ AGAAAATCATAAATGATGTCATAGGAGATGATGAC 2559673 32 100.0 34 ................................ TAAAAAATTAGACTGTTTTACAGCGTTTGAATGA 2559739 32 100.0 34 ................................ ATTCATTACTCGCAAGCCATTGAACCTCAATGTC 2559805 32 100.0 34 ................................ CATGCGGTTTCAATCGCCTCTCCGGCTGTTTCGA 2559871 32 100.0 34 ................................ AATCTCAACCGATACGGCATGTAACTTGTTTTTT 2559937 32 100.0 33 ................................ TTTCTTACCAGATTTTCAACCCGGCACTGCAAA 2560002 32 100.0 34 ................................ GACAGATGGAAATGGAGGAATTTTTAAATGGCAG 2560068 32 100.0 36 ................................ AGTGATATTTATAATCAGTTAAAACGTGAGTTTGGT 2560136 32 100.0 35 ................................ ATCTCACGATCACTGGCAAGGCAAGGCCTATAAAA 2560203 32 100.0 33 ................................ AAGTCATCAAAAGCCGCCAATGCTCCAGCTGCT 2560268 32 100.0 33 ................................ CACCATCAAGAAATCCGACCTCAATTGCTACGG 2560333 32 100.0 34 ................................ CCTGATGTCTTTTGCTGTTGTTTTCATTGTTTTT 2560399 32 100.0 34 ................................ GAAAACGGCTGTGATGGCGTAGGCGGGTTTAGAA 2560465 32 100.0 33 ................................ AATGAAAATGAAGAATACAATTAATAAAGACAC 2560530 32 100.0 36 ................................ AACTTATACTTATCGTAAATCATCACGTATGGGCTG 2560598 32 100.0 34 ................................ AAGATATAAAGTTGATAATCTTGATGATTATGAC 2560664 32 100.0 34 ................................ TTTGGATATACGACTTCATCTGGCAATGTAGAAT 2560730 32 93.8 0 ............................T.T. | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 99.7 34 GTCGCTCCTCTTGTAGGAGCGTGGATTGAAAT # Left flank : CATTGATGCATATCCGCCATTTTTGTGGAAATAGAGGTGATATTTTGCTTGTATTGATTGCATATGATGTTAATACAGAAAATGAAGCAGGAAAGAGCAGACTTCGTAAAGTAGCAAAACAATGTGTAAACTATGGAGTACGAGTACAAAATTCTGTTTTTGAATGTATTGTAGATGGTGCCCAGTGTCGCATGCTGAAAGGAAAACTACAGGAAATTATAGACGAAGAAAAAGACAGCATTCGTATTTATTATTTAAACGATAAACAAAAACAGAAAATAGAATGTCTGGGTGTAAAAAAAGGAATATCAGTAGAAAATACGCTGATATTTTAAAGCGGTGCGGATCATAAGCGAACATGAAAAAGCGGATGATTCGCACCGGAAAAATGCAATATTTTTTGTGTTGCATAAAATAATTATTGCGGTTTTGATGGAATTATATAGACACTATGCAATAATTATTGCAGAGATGCATGAGGAATATTGTGCATTTTTGCT # Right flank : TCCTAATAGGACAGGTAGGACTTTTTCTTATGTTGTTAATTAACATACTTTGACGTTAAAAAATATCTGTCAAATAAAGCTATTTATATGATATCATAGATATTATAAAGAAATCTTATTTGATGCTTTTACATAGTTTTCAGTCAAATGACGTAATTTGTCAGAGACGGTACACATTTACAATTTGGAAGGATGAGTAAGTATTATTCGATAGTTGAGAAGAATAGGGCAGTAGCTTGGCGAAAAGATAATAATTATCATTGTTTATAGGAGAATGCCATATATGAAAAAAGTGGGAAGTTATGCATTGCTAATCAGTATGCTATCAGGATGCAGCCAACAAAATACAGTGAATCAAACTGAAAGTGAGGTATCAGAAGCACAAATGCAGGAGAATAGCGAAAATATAGAAACAGAAAAAATGCAGGATACAGAAAAGATCCAGAATACAGAGAAAATCCAAGATACAGAAAAAAATGAAAACAGAGAGAAGCTATCTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCTTGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : NA //