Array 1 2050-2598 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPZR01000162.1 Tistrella mobilis strain MCCC 1A02139 contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2050 31 100.0 33 ............................... CGCCGAGGTGATGGCGGCTTCGGCAGCGCCGAT 2114 31 100.0 35 ............................... TTGATCGAGATGTCATCGAGGTGGCCATATTCCGC 2180 31 100.0 33 ............................... AGATTGCCGATGGATCATCCATAGAACCACCAG 2244 31 100.0 34 ............................... ATCGATGGAGTCACACGCGCCAACGGGGCGGTAC 2309 31 100.0 34 ............................... GTCGTCGTGGGAGGGACTGATCCATGGACCTCTA 2374 31 100.0 33 ............................... GGCCCGGAGCCGCGCGTCCAGCTTCCGGCGCGC 2438 31 100.0 34 ............................... CAGATCAGCCAGTCGAAGCAGATTGGCAGCCCAT 2503 31 100.0 34 ............................... AAGTACCCTGAGAACCACCCGGTCTCTGCCGGCG 2568 31 96.8 0 ..............................T | ========== ====== ====== ====== =============================== =================================== ================== 9 31 99.6 34 GTCGCACCCTTGCGGGTGCGTGGATTGAAAC # Left flank : TTGACAAAGGGTCGGAAGACGGAGAATTTGGAGGCATGACCATTTGCTCCGGTCATGGAAACTTTATTACATCTCTTGCATAATGGCATGCACGCGCCGCGACCAGTAAGCTGATGCCTGCGCGCCCATCAGATACTTACTTGCCCGCCTCATTCAAACAGACCTGTCGGGCTCAATACCTGCCGATTCCCCCCAATATTTATACCGTCATCCCGGCGAAGGCCCGGATCCAGGTTCGTCTCCGCACGAAGACCGTCGAACCACCTGCCGCCTGCCCCGACAGCCGCCCCAGGCCGCCGCCCCCCGGATTCGCCCCGCCTCGCCCGCGAACCCCAAGCTCCCGTAAAAACCCCGGGAGGTTCGCGGAAAAAATTCTCACCAATTTTCAATCAGTTAAATTTCACAAAATCATCTTGTTCATACCAAGGAATGACATCCTGAGAAGGTTCGCGCTGATCGCCTTTTTCCGGCGCCGGATTCAGGGTATTAAGAAGGGGTGA # Right flank : TCGAACGCAACACCATATTCCGACAGCCCCGTCTGACTCAGTACCTGCCAATCCCCACCCGACATTTATACCGTCATCCCGGCGAAGGCCGGGATCCAGGTTGGCTTCTACGGGAATGGATGGCAAATATTTGCAGGGACCGACATGTCAGCCATGGTGGCGAACCTGGCTATCGGGACAGGCGGCAGGTCGTTCGACGGTCTTCGCGCGGAGACGAACCTGGATCCCGGCCTTCGCCGGGATGACGGTGGCTGTGTGGTGCGACCACCGGATATGACGGCGCCGGACAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 54981-55406 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPZR01000165.1 Tistrella mobilis strain MCCC 1A02139 contig37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 54981 33 97.0 33 ...........T..................... TCGCCGGTGCCGGCTCAGAAACCGTCGCAGACG 55047 33 97.0 32 ................................T CGGTCACCATATAATATGACCCATTGACGTAG 55112 33 97.0 34 ................................A AGCTGGGCGAAACGGTCTGACCACTCGAAGCGCC 55179 33 100.0 31 ................................. ACGGGGACCACAACGGGGTCGCGTTCGTCAG 55243 33 97.0 32 ................A................ ATCGCGCGCTATCGCCTCCACCGCAATGGCCC 55308 33 97.0 33 ................................C GCTGGTGAGGCTCTGATGCGGTCGCTGCGCGTG 55374 33 93.9 0 ..........C.........A............ | ========== ====== ====== ====== ================================= ================================== ================== 7 33 97.0 33 GTCGCACCCCGCGGGGGTGCGTGGATTGAAACG # Left flank : TCTTCTTCGCCACCCCGGCCCGGGCCACGATGGCATCGATGCCGGTGCCGGCGATCCCATGGTCATAAAACAGCGCCGCCGCCGCCCGCAGCAGGCGGTCACGCGCGGGAAGGGCGCCATCGGCGGGGCGGCCGGTCTCTTCATCCGTGGCGGCAGGGGGTGTGGCGGCAGGGGGCAGGGTGGCAGGGGACATAGGCCTCAGCCTCTATGAGTAGGTAGACCGATCTACCTACTTCCCCGCCCGCCCGTCAAGCGCCGACAGCCCCGGCCGCCATCAAAGATGACGCCACCCCGCCTTTCTGGCAGACTGATCCCCACAGGCTTTGCGCGAACCCCAAGCACACGTAAAAACCCCGGGAGGTTCGCAGCGCAGATTTTCCAGATTTATCAAGCGCATGCATTTTGCAGTGACATGACATACACGCATCGGCATGGTCGGCCATGAGGTTCGCGCAAACCGGCTTTTTTCAGCGCCGAATCAGGGTATTGAAGAGGGGTAG # Right flank : GGCTTCTCGCCATCTTCCTTTTATTACATCTGGGTCGCACCCCACATGGCCGCCTGAACCGACCTCCAGAACCTGAACCGACCCCATGGCCGGGGGCCACGTCCCCGGCCATGGGCTTTGTCATGCCCGATGGTTGTGGCTTGTCCGGTATCGCTGGCCGGTCGGCACAACCTCTGCGTTTTGCATCGGAATCGACTCGCCTTAAGCGCGTTTCTGTGCGTACATATTCATACGCATGGTGGCAGAGGCGTGATCTGCGGGGCGTCTGGGGCGGGTGTCTGCGCCAGGACGGGCCGGCAGGGACCCTGGGCGCCCCGGCCTGACCTGCGTCAACCGGCAGGGAGGTTACCGTGACCGAATTTACCCCCATTACGCCCTATGGCGTCGCCATCCGCACGGCGATGGCCAGTGGCAATGTCGATGCGCTGAAGGTGGCGCTGTCGCTTGCCCAGGAACTCTATGCCCGGGACGGCGATGTGCGCTCGGCGGTTTCGGCCGCC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGGGGGTGCGTGGATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.90,-7.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20922-23328 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPZR01000171.1 Tistrella mobilis strain MCCC 1A02139 contig42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20922 29 100.0 32 ............................. CGTATCCTTGAGGGGCAGATACAGGCGCGTGG 20983 29 96.6 32 ............................G TCCGCGACCATGCCCCGGGTGATCGAGCGGGC 21044 29 100.0 32 ............................. AGGCAATCAAGTGGGCGCGGCGCTGGCTGGGC 21105 29 96.6 32 ............................T TTGCAAAGTCTTTGGGGCCGTCAGCTGGGACA 21166 29 100.0 32 ............................. CCGGGGTGATACCGGATCGCCCCGGGCAGCCA 21227 29 96.6 32 ............................T CCCCTAGATGCACCACGGGACGCTTTGGGTGC 21288 29 100.0 32 ............................. GTCGCCCGTTTCCAGTAGCGCTGAGAAGCTGT 21349 29 100.0 32 ............................. AGGACGTTCCACGCCCCATCCGCATCAATCCA 21410 29 100.0 32 ............................. AGGATGAGATAGTCAATCGCCCATCGGGTGTA 21471 29 100.0 32 ............................. CCTGTACTTACGGACGGGCATCACCTTCTCCC 21532 29 96.6 32 ............................G CCTGGGGTCGAGGTAGATTGCACAGCCCGTAG 21593 29 100.0 31 ............................. GACATATGATCAATCTCAGACGGCTAGAAAG 21653 29 100.0 32 ............................. CCTCCACCTCGTGGGTCCGCGTATTGATCCAA 21714 29 100.0 32 ............................. TCCACCGATGGAGCCGATCAACAGGTTTTTGG 21775 29 100.0 32 ............................. TGATCGGCTGAGAGGCGCCCGCCCTGCATGAT 21836 29 100.0 32 ............................. GTCCCCCAATAGGTGCGCGACGGCCCGAGCCA 21897 29 100.0 32 ............................. TGGTGGAGGCCCGGGCCGGTATGTGACTCTAT 21958 29 100.0 32 ............................. CGGCCCAGGTGGGCCAGCGTCGCACCAGCAGC 22019 29 100.0 32 ............................. GCCGGCCGACGGGCGGCCGACAAGATCATGGG 22080 29 100.0 32 ............................. CACGGGTCAAGCCTTGGGTCGTTGGCTCCGCA 22141 29 96.6 32 ............................T CTGATGACGGCCTTCGCCACCACCATGGCGGT 22202 29 96.6 32 ............................G TCATGCTTGCGTGACTTTTTTCTGTTGCCGCG 22263 29 100.0 32 ............................. TTCGTGCACTCGATGGACGCGGCTCACCTGTC 22324 29 96.6 32 ............................A GACCAATCATTCTTTCTTCCAACGCCACCTGT 22385 29 100.0 32 ............................. CTTCCAGATCGGGGGGACATCGAGCACGTGCA 22446 29 100.0 32 ............................. GGGATGACCAAGAGCATGGCTGATGCTCACCA 22507 29 100.0 32 ............................. CAGAGCCGCCTTCAGAATCACCTCCTGGTGAG 22568 29 96.6 32 ............................T TTTCAACCTTTCTAGCCGTCTGAGATTGATCA 22629 29 100.0 32 ............................. GGCTTGTCAGCCAGGGTCCACTCCAGGTTTTC 22690 29 100.0 32 ............................. CCGTCGACCGGCTCTCGTCCAGCAGGCCGGGG 22751 29 100.0 32 ............................. GTCCGAAAGTGAGGGGCCACTGATGACTTATG 22812 29 100.0 32 ............................. CACGGTCCCTCGAAAAAAATGCATCCTGGTCC 22873 29 100.0 32 ............................. CTCTCGCGGATCATGTCGTCCATAAGCCAGGA 22934 29 96.6 32 .......T..................... CGGCGGCAGGTCAAGAGATACCGCGTTAAGGC 22995 29 100.0 32 ............................. CAGACCATCCTGCCATCAACGTAACCGGCGAA 23056 29 100.0 32 ............................. ATGGTCGTCATACATCGTCTCCCTGCTCGCGC 23117 29 100.0 32 ............................. CGCTTGATATTGCAGCCATTGCCGACATGGCG 23178 29 100.0 32 ............................. GGACACGCACCTGCTGGAGTGTCATGCTCAGG 23239 29 100.0 32 ............................. CTCTTTTAGGTCTGGGGTCAGTCGGTGTTTTA 23300 29 75.9 0 ...........AC......C..C..G.GA | ========== ====== ====== ====== ============================= ================================ ================== 40 29 98.6 32 GGTTCCCCCGCGTGGGCGGGGATAGACCC # Left flank : CAGGCTTACGCCCGTGAAGAGCTGGTTGCCGAACTTGGCGCGGCCTTCCTGTGCGCGGATCTGGGCGTTGCACTCACGCCGCGCGAGGACCATGCCGCCTATCTTGCGAGCTGGCTCGATGTGCTCAGGGCAGATAAGCGTGCGATCTTCCAGGCCGCGAGTTTTGCGGCACGGGCGGTCGACTATCTCCATACGCTGCAGGCGGCGGCATCGGGGCAGGCTGTCGCGTAGCTATAAAAATGCACTTACATCACTGTATATACAGTGATGTAAGTGCATCTTAATGTATCATTGGCCTGTGATGGGCGGAAGGACAGTGACGGGCATGGGAGCGTGGCTTGTCTTAAAATCTCCGTCCGAAGGGCCGGTGTCGATCGGATGAATTCTGGTAGTCTTGAGGCTGTCATGGTTCTGAGCGAATACCATGAGATGCCTGCGCTGCAGGGACGGGCTTGTTCTTTGGGGCGAGTTTAAGTTATTTCAATGGGTTGAAGGCAAGG # Right flank : ATCAGAAGCAAATACAGAAAACCGCACTTTAATTATTTAATAAAATGCGATTTACCAACATTCTTGGGGTGCCTGACACTCAGGACCAAGAGGGACACCATGAGCTTCAAGCTCTATCTCCCGGCAATATCTCCCGGCAATATCTCACGATCCGAAGGTACCCATAATATGACCCCCTCAGAATTCTCAGCCCTTCGTAAGGCATTGGGCTACACCCAGGCGCAACTCGCGGAAGCCCTGGGCATGGGCCGCCGCACCATCATCGACATCGAGGCCGGCACCACCCCTGTCCGGATCATCCACATTCTGGCCCTGGAGCGCCTGTCGCTTACCGCGGCCGTGGAACATCGCGACCCGATGCGCGCCACCGCATCCGTCCGCCGCGAAGCTCTCGACATCACGGCCCTGATCCGTGGCGAAGCCTGACCGTTCCGCTCCCGCATCACCGGTTCTTCCACACACGCAAGGGCGGGGGCGGATCCGGCCGACCGGACCCGCCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTGGGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 33685-35483 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPZR01000171.1 Tistrella mobilis strain MCCC 1A02139 contig42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33685 29 100.0 32 ............................. TCGCCCTCAACCGCCTGTCGCACCTCACCCGG 33746 29 96.6 32 ............................G CTCGATCCCGATCAGCCCGCCCCGCCAGACCA 33807 29 100.0 32 ............................. TCCATCCTCAAGGCAGGCAACTCTGCCACTCT 33868 29 100.0 32 ............................. TCAGGCGCGAAGATTCAATGCCAGGCGGTCCC 33929 29 100.0 32 ............................. AGATTTTTTGGACCAGGATGCATTTTTTCGAG 33990 29 96.6 32 ............................A AATCCGCCCACACGCCCGCGCGTGCCTTGAGA 34051 29 100.0 32 ............................. TCGCGGGTCCATCTGTTGAACAAGCTTCGCTT 34112 29 100.0 32 ............................. GCATGCTGGCTGCGGGCAAAGGACGGGGTCTT 34173 29 100.0 32 ............................. GACCGACCTAACGCACACCTAACGCCCGCCGA 34234 29 100.0 32 ............................. CCTCCACAAGCTGGGTGCGCGTGTTGATCCAG 34295 29 100.0 32 ............................. CCGCTGGAGACCAGTCCCTAGGACTACCTAGG 34356 29 100.0 32 ............................. ATCTCGTGGGTCGAAGAGCGCAACGAGATTAT 34417 29 100.0 33 ............................. CGCTGGTGTATCGGGCGCTGCAATACTATCGCC 34479 29 100.0 32 ............................. GCAGAAGGCGCTCGACGAAGTCGAGAAAGTGC 34540 29 100.0 32 ............................. CGAACAGCGGCAGCGGGTTAGCGCTAGTCGGG 34601 29 96.6 32 ............................T TACCTTAGCTTCTTCTATTCCTTCAATAATGT 34662 29 100.0 32 ............................. GCAGGCGCCGCGACGACGACGGCGTAATCGAC 34723 29 100.0 32 ............................. ATCTTGTCCATTTCCGCTTGGACCTGGACCAA 34784 29 100.0 32 ............................. TCGCTCATGCCGTCCCTCCCAGCCGCCGGCGC 34845 29 100.0 32 ............................. GACGCCTGTTTTGCTGCGGATCGTCTGGCGCA 34906 29 100.0 32 ............................. CCTGCGCAGGTCTCTCGTATGAGCGAGGCCGA 34967 29 100.0 32 ............................. CCCGTCCCTCCTTCTCCAGGGCGCCCCGCACG 35028 29 96.6 32 ............T................ GTCGCGGATCCGTGGGGGGCCATTCCGAAGGT 35089 29 96.6 32 ............................G TACAGGGTCAAGGTGTCATTCGATGACGGCGG 35150 29 100.0 32 ............................. CTGCAGCTGGCGTGGGAAAACGCGGACGCCGA 35211 29 96.6 32 ............................T TACAGGGCTTTCCTTGAGGCGCTGAAGCGCCT 35272 29 100.0 32 ............................. AATCCGCATGACATCCGGATTAGCGCCGCGGC 35333 29 100.0 32 ............................. CGAGGATGATGTCGCGGCGGCGACGGCGGCGA 35394 29 100.0 32 ............................. TTTCGCGCGCATCGCGGCGGTTCTCCGAGACG 35455 29 86.2 0 ...........G..A...........T.G | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.9 32 GGTTCCCCCGCACGGGCGGGGATAGACCC # Left flank : GCTGATGATCGACCGCATCAAGAGCCTGCTCGCGGTCGATGCCCAAGGGAAAGATGCCCAGGCTAAAGATGCCCAGGCTGAAGATGCTCAGGCGAAAGATGATGAACGTGCGAAGGATGACCTCCGGGCAGAGGATGACGGCTGATGCCCATGGTCGTGGTGGTCACCCGCGATGTGGAGGGCCGATACCGGGGATTTCTCGGTTCCGTGATGCTCGAACTGTCACCAGGGGTCTATGCTCATCCGCGCATGAATGCCGGCGTCCGGCAGCGGATCTGGTCTGTGCTCGAAGAGTGGTACGGCCATCTCCAGCGGGGCAGTATCGTCATGACCTGGGCCGACAGCGCCGCCCATGGCGGCCTGGGCCTCAGCGCCCTCGGGGAGCCGCCAAAGGACATCGTATCGCATGATGGGATGCTCCTGGTCCGGCGCCTCTTGCGGAAGGGGTGATTGCCAGCTCTTTTGATGAAGTGAATGATTTCAAGGAATTGAAGGTCAGG # Right flank : GGCTGACGAGCAGAGCCCACGTTCGTGCGAGCCCTGCGGCCTTCAGTACGTCGGAGAGGTTGAGGGGAGCATCAGACAGTTTAGGTTCACTTGCGGTCCTGGTTCGCCAGACCTACATTGCCGACGATCGTCGCGTGGCTGGGGTACCGGTAGCCGTCTGCAAGGTCATGCGATTGGGGCGGGGTCGATCGGCAGGCGCTGCCCATTTTCTTTTTAAGAATCAGGCCGACGGTCGAGCCGCGCTCCCGCGCGATATCTCTTCAGATCGCTCTTTTTGCGTTTCATGCTGGTTGGCCCCTTTGCCGTCACGAGCCAGTTTCGCTTCCCCCTTCCACCGCTGAGAAGAACAGCATGTCTCATCGCGCATAAAATCATATTTACATATATACAGCTAAACGCTAATACATCTATGTAGATACATATAAGAGCCTCAAGGAGACCGCCGATGCCCGTCATCGCGCTCGCCAACAGCAAAGGCGGGGTGGGGAAGTCGACCACCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACGGGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.60,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 73837-75127 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPZR01000196.1 Tistrella mobilis strain MCCC 1A02139 contig65, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 73837 36 97.2 30 ........................A........... AGCAAAGCCCGAATGGCCCACCAGATCGCA 73903 36 97.2 31 ........................A........... CTGCGTTGTTGTCGCGGATGACGTGGTTGAG 73970 36 97.2 30 ........................A........... GCGCGGATCTGTCGGCGGTGGTCGCGACGG 74036 36 97.2 30 ........................A........... GCAAGAGCGAGGGCGATCATGAGCCGCCCG 74102 36 100.0 30 .................................... TCTACATCGTGACGCAGATCGGGTGCGGGC 74168 36 100.0 30 .................................... TGCCCCGCGACCGTGATCACGCCGGTGGCC 74234 36 100.0 30 .................................... CGGCGGCGGTGACGGCTGAGGCGGCGGCCC 74300 36 100.0 30 .................................... AATGGTGTACCGCGTGACTGCGCGGTGATG 74366 36 100.0 30 .................................... CCGCCGCAGCAGGTCAGCATCATGCGCATC 74432 36 100.0 30 .................................... GACTGTTCGACGCGGAGGCCCAACGGCACC 74498 36 100.0 30 .................................... GGATGGCCGGGCGCCGCAGTGAATTGCATC 74564 36 100.0 30 .................................... CGGATCTGGGCGATCCACTGTTCCTTGGTG 74630 36 100.0 30 .................................... CCCTCTCGCGTCTCAACCTCCGACCAGGGC 74696 36 100.0 30 .................................... GAAGGGTCGCGGTTCCACTGCGACAGCTCG 74762 36 100.0 30 .................................... GGGCCACCGCGCTGCGCCCTTCCGCGATCG 74828 36 100.0 30 .................................... AGGCGGGCCAGCGTGGTCTGCAGGGCGGCA 74894 36 100.0 30 .................................... CCCCGCTGGTCCATCTCGGCCGACGGGGCC 74960 36 100.0 30 .................................... GTCGGGTGATCATTGCCGCCATTGACCCCG 75026 36 100.0 30 .................................... ATACTTTCGGGGATTACTGCGGCAGCATCA 75092 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.4 30 AGTGTAGCAAACCCGGGAACGGCCGCGAACCGCAGC # Left flank : TCGAAGAGCGCAAGGATCTGCTCATCCTGCCCGCCAGCCTCCCCGACCCGGATCTCGACCTCACGACCCAGGCGGAGGAACCCGATGCCCCCTGACGATCCCGACCCCGTCCGGCCGCAACCGGCCTGGCCCAGCGGATGGAAGACCGTGTGGCTGCTCTCGCTCTTCGACCTGCCGACCGAGACCAAAGCGCAGAGGCGGGCCTATACCCGCTTCCGCAAGGATCTGCTCAACGACGGCTTCACCATGATGCAGTACTCGGTCTATCAGCGCCATTGTGCCAGCCCGGAGAATGCCGAACTGCATCTCCAGCGCATCGCCGCCGTGCTGCCCCCGGAAGGCGAGGTCCGGTTCCTCATCATCACCGACAAACAGTTCGGTCGCATCAGAACCTTCTGGGGATCCCGGCGCAAACCCGCAGAGAAAACCCCGGCCCAGCTGGAATTTTTCTAGCCGAACCGGGGATTCTCATCGGTATATCAGGCAGATGCTCCGGGGCT # Right flank : CTCTTTCATCCACGGGCTCGTCCATGAAGCAAATGTAGCACGCGGGCGGCGAGCGTGACGCTTCTTCCTTATCGCCGCCGGACCGACGTCCCGACCCTCACTGTTCCACGACACACAGGATTTCATGCCGGCCGTCGGGCAGGCGCCGGCGGACCAGGCGGTCGGCGAGGCGTGTCATCAGCGCCAGCACGACGCCGTTCATCACCCCGTCTTCGTCGACATGATCCTCGAGGCTCGGCTGCGGCCCGGGTTCGAGCGCCGTCCCCGTCCAGCTCAGCGACACTTCCAGGCGGTATTCATCCATGCGGGTGGTCACCGCGATCGGGCTTGCGCCGGCGAGCGCCGGGGCTGCATGGCTGAATTCGTCGGCCAGCTGGACGAGCCGCAGCATGGCATCGGCGCGCACGCCGCCGGCCTCGCCGCTTTCGCGCAGAAAGTCCCGCAGCGGCGCGAAGCCGTCGGCGGGCCGCCAGGCGAATTGTCGGGTCGTCCGGCTGCCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTAGCAAACCCGGGAACGGCCGCGAACCGCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 24857-25029 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPZR01000201.1 Tistrella mobilis strain MCCC 1A02139 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================== ================== 24857 37 100.0 31 ..................................... GTGCCATACCCCGTGGAGGCACCGGAGAATT 24925 37 100.0 31 ..................................... CCCAGCAAAACCCGTCCATTGCTGGTCAAAA 24993 37 97.3 0 ........................T............ | ========== ====== ====== ====== ===================================== =============================== ================== 3 37 99.1 32 GTTTGAAGCCATGACCATTTGCTCCGGTCATGGAAAC # Left flank : GCGGCCTTCGGCAGAGGCTATTTCCTCGACACCGCCACCATGGACTGGTTCTGCGACCTGTTGCTGACCGGCACCGAAGACGCCCGCGACCCCCGCGCCTCCCCCCTGCTCTGGCCGGATGTCGCCGGCACCTGCCCGATCGTGCTGGCCACCGCCGGCTTCGACCCGCTCTCCGACCAGGGCGACGCCATGGCCGACCGCCTGGCGGCCGCGGGCGTGCCGGTCGACCATCTGCGCCTGCCCGACATGATCCACAACTTCCCCGGCTATGCCGGCCTGTCGGCGGGCGCCGAAGCGGCCTTCGCGCGGGTGGTGGATGCCTTCGGGGCACGCCTAAGCCGGACGGCGAGAGGGTAACTCCGTGGAAACGCTATCTTATTGATAATCTTAAGAAATAAGACAGGACGAAACGAGATGCATAACCCGTTATGCAAAAGACCCGGACCCGACGGAAATCGGGCGTTTCGGAGACCTCTTGACAAGGGGTTGGAAGGGGGGGA # Right flank : CCCCGCAACCCGGTTTTCCCGGGTTGTTGATCGATTCAGCCATCTGACTGCGCGCGGCGCGCCGTTGATGTCCGGCGCTGTCGCTGCCCGGACCTCCACATCCGCCCCACCGTCATCCCGGCCTTCGCCGGGGGACGACGGAGGGCGCGTGCAGCGGGTGGCGGCGCCTTGCATCGGACAGCGCCGTCGCGCCGCTCCCCTGTTGCGCAGGGTCTGAAGGTCCAGCCCGGTCAAAGCCCGGTCATCACCGCCACCGGCAGCCGGGTCAGCAGGCCCGAGACCGCGAGTCCGCCGTCGCGGAGCGCCAGTCTTTCACCCGTCAGCACCTCGTGATGATGGCCGGCGAGCGGGCCCGGGATGTCGATCAGCGTGTCGGCCCAGCCCTCGGCCGGGATCAGCGGCGCGCCGCCTTCGGGGATCAGCCGGTCGGCGAGGCGCGAGACCAGGATGATGGCGTGGGGTGGCTGGGCCCCCTCTGTCGCGGTGCCCACCCGGGCGAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGCCATGACCATTTGCTCCGGTCATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 14046-14268 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPZR01000205.1 Tistrella mobilis strain MCCC 1A02139 contig73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 14046 31 100.0 34 ............................... CGTGTCTGGGGGCTACCGCCCCCCTCTGAAAGGG 14111 31 100.0 33 ............................... GCCGCGATCGCACCGGCGATCTCTTCGGGGCTG 14175 31 100.0 32 ............................... CTCGACGTACAGCCCGGTGCTGTCCTCGCGCA 14238 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 4 31 100.0 33 GTCGCACCCTTGCGGGTGCGTGGATTGAAAC # Left flank : CGGACCTCCGGATTTCGCTCCGCCCGCAAATATCATCCGCTTGCGTGCAAACGTCAGCCTCCACCCTGTAAAATAATCGTACAAACTCTCCACAGTCATCCCGGCGAAGGCCGGGATCCAGGTAGGCCTCTATCCCAATGAACAAAAAATACCTGGCGCACCGGTCATATCACGCGCCCGGTCAGTCATGATCTGAGTCCGCATATCCCGTATCCTTTACGCAGACATGAACCCGATCTCCGCCCCTCGGGCAACGCCCTGCACAATAAAAGCCGACCCCGTCTTTCCGGCTACCACAGCCCCGATAACCACCCCGCCTCACCCGCGAACCCCAAGCTCCCGTAAAAACCCCGGGAGGTTCGCGGGAAAAGTTCTCCTGATCTTTCAGGGCATTAAATTTCACATGCGTGAAGAGTTCATACGATAGAATATCCCCCAACAGAGGTTCGCGCGGATCGCCTTTTTCCGGTCCCCGATTCAGGCTATTAAGAGGGGGTGGG # Right flank : CCGTCGCCTGTTTCCCAGCCACCGTTGTGGCCGCCTCAATCGGCCGACAGCCGAAGCGTGGTCAGATACCGCAGCAGATGCCGCGCGCCCTCGGCCGCGAGGCGCAGATGCCGGGCCCGGGCGTCTTCATCCAGCTCCGGATCATCGGCGATCGAGACATGCAGCCCCACCAGCCAAGCCTGAAACGCGGCCCCTGACACCGACCCCGCCGTCACCCCGACTGCCCGCGCCATCACGGCATTGCGCAGCGCGTCCAGCGCCAGCGCCAACCCCGGCTCCGCGGTCACATCGACCCAGCCGCCGGCGATCTGGTCGTCCAGGATTGCCCAATCGGTGGCGAGGGCCGCAACGGGGCAGGGCGCGGTGAGGGGCTGGTCGGTCATCGGTGGCTCCGGCGTTGTCTGAAGGTTCCTCCGGAGCCTGGGGCAGTTCGCCCCGTTTAACCACGGACTATAGGCCTCATGTAGACGGCGAGGCGGGTGAAGGTGCCGCGCCGGATG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26-444 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPZR01000033.1 Tistrella mobilis strain MCCC 1A02139 contig128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 26 31 100.0 34 ............................... CCGACCGCGTCGGACCTCTTCAACATCGCCTACG 91 31 96.8 34 .........................C..... ACGACGTCGTCGAGATTGACCGCCGCCTCCGCGC 156 31 100.0 33 ............................... AGGCAGTGCGCGTAGCAGATGAGCGCGACCGGC 220 31 100.0 34 ............................... GGGCGGCGAATGACAAGCTCGAAGCCGACATCAA 285 31 100.0 33 ............................... AAATTTTCTTCCGTGCTTTTTTTCATATAGTTC 349 31 100.0 34 ............................... ATCGAGATAGCGAAGGAGGGGCTCATAGTCGCCC 414 31 96.8 0 ..............................T | ========== ====== ====== ====== =============================== ================================== ================== 7 31 99.1 34 GTCGCACCCTTGCGGGTGCGTGGATTGAAAC # Left flank : GATTCAGGATATTAAGAGGGGGTGGG # Right flank : TCCCGGCACGGAGACGCCGGCCCGCTGCCTGATGCATAGCCGGGCCCACCCGCTTCTTACAGAAAGACAATCCCGTCATCCCCGCGAAGGCGGGGATCCACCTTGTTCTCCGGCCGAAGAACGTCGCACGTCTGGGCACCGCCGGGCCGCCCTTGACCACCGCGAAGGTGGATCCCCGCCTCCGCGGGGATGACGGTGGTGGGGGTGGAGCGTCCCTGGCTGGGGCGGCGCCCGGCGCGGGTCAGTCGCGGAAGGTGGCGGGGCGTTTTTCGAAGAAGGCGGTCATCGCTTCGGTCAGGTCGTCCGACAGCAGCATGGCGGCGTTCCAGGTGGCGATGTAGTTCAGCCCGTCGGCGACCGGATGGTCGCGGACATAGGTGATCATCTCCTTGGTGCCGCGGATGGCGAGCGGGGATTTGGAGGCGATCCCGGCCGCGATCGCCAGCACGCCTTCGTTCAGTGCATCGACGGTGGGGAATCGGCGGTTGATCAGCTGCATG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 679-844 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPZR01000080.1 Tistrella mobilis strain MCCC 1A02139 contig170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 679 32 100.0 35 ................................ TCCCGGACGGCCTGAGCGTCGGCGGTTCTCGTTTC 746 32 100.0 35 ................................ CCTCGTGCGCCCGTTTATCTGGGCCAACCTGTTTC 813 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 36 CATGACCGGAGCGATTGGTCATGGCTTCAAAC # Left flank : CAGGGGCCGTCCGTGATGCAGTGCAGACGGGCCAATACGCCTCGACCAGCGAGGTGATCGGCGAGGCCGTGCGCGAATGGCACGATCGTCGCGATCTGCTGGGCTACACGGTCGACGACTTGCGCGATCTGGTTCAGGCCGGTCTCGACAGCGGCCCGTCGATCGACGCCGAAGAGGTCTTCGCGGGGCTTCGCGAGAGGTTACGCACCCACCTTTCCGACGACATATGAAGCTTCGGCTTCTTCCGCAGGCGGCGGCGTCGGCATCGGCGATCCCCGCCAGCCCCACCTCGCGCAGGCGCGGCGTGGCGACTGTCTCGGGCGCCGCCACCCGGGCGGTCACCAGATCCCGCACCACCACCACGACCAGCCGCATGGCGCCCCCCATCCGATCAACCCTGGGACGAGGCTATCATCCGGACGGGTGAGCGGGAAGAGTGAAGGGTCACAGGATCGGAGGGGGCGCTTTTGAAAAGGGAGAGGGCAAGACACAGGAAAGCG # Right flank : CTCCCCCTCTTCCAGGCCATTGTCAAGATATCCTGTTTTGGCCCATTTTCCGTCGGGATCGAGTTCATTTCATACATTGGTATTCATTGCTTGAAGACATCCAGGTTTCTGTAATAATATCAGATAATTATGAAGTCCACTGGGTCTTTGCGCCATGTTCGACCGTCTGCTCGCTCCCGATCGGCTCCGGGAAGCCTGGTCCAAGATGTTGCGCAACCGCGGCGGCCCGGGTGGTGATGGTGAAAGTCTGGATGCCTTCCGTATCGGTGTCGAGCCCCGGCTTGCCCGGCTGGCGGCGGATGTGCGGGGTGGGACCTGGCGGCCGGGGCCCTATCGTCTGCTCGATCGCCTGAGAGAGGCGACCGGGGACGCCCGTCTGGTCGACCTGATCGGTCTCTGGCTGGGTGCATAAAATGCACAGACATCATTGGCCTGTGATTTTTTCCGGTGCCCGAGCAGCTCCGGAACATTGCTGAGGGGGCCGGTGCTTCTGCAATCCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATGACCGGAGCGATTGGTCATGGCTTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //