Array 1 23858-22631 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRX01000024.1 Rhodocyclus purpureus strain DSM 168 scaffold0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23857 28 100.0 32 ............................ TGCCCGTCGAGCCCTCGGCGGCGAGAGCGGGG 23797 28 100.0 32 ............................ GCAGGAAGTACATACAAAACCGAATGTGAAGT 23737 28 100.0 32 ............................ ATATCGTATGCATTGCCCGATTTCTTCGATTT 23677 28 100.0 31 ............................ CTTCAAGGGCTGGCCGGTGGCGGCGTTGATG 23618 28 100.0 32 ............................ CTGGACCTTCTGCAGGGCTCCGCCGATGCCGG 23558 28 100.0 32 ............................ TTGTCGTCGACGAAGACGGCAACCCGCAGGTC 23498 28 100.0 32 ............................ TATGCCAAGCGATGACACCGGCGCCGGCCTGC 23438 28 100.0 32 ............................ GTCGCCGCCGGCATCGTCGCAAATCAGGTGCC 23378 28 100.0 32 ............................ TCCTCGTCCTTGAACGACATGATCGCGGTGCG 23318 28 100.0 32 ............................ AGCGGCAGCGGCGCGAGCCTGCGCCTGCTGAC 23258 28 100.0 32 ............................ AGCCCGCCGTGTCGCTCCATCGTCGAAACGTC 23198 28 100.0 32 ............................ TTGTCCTGCGCGATCAGCGAGCCGACTGCAAT 23138 28 100.0 32 ............................ ATGAGGAAAGCGGCGACGCGTAGGGCGCCAGC 23078 28 100.0 32 ............................ GAACCTGGTGCAGCTTGGTGAGGCCATCAGGG 23018 28 100.0 32 ............................ CCCGCACGAATCGGCCGCTTCAAGGGAGAAAT 22958 28 100.0 32 ............................ TTGAGCGGGTCGAAGCGTTGCGCGATGACGGA 22898 28 100.0 32 ............................ GTGCGCGCCTACGCGCCGACCCAGCTTATCAA 22838 28 100.0 32 ............................ GTGCTCGTCCGCCCACCGCTGCTCATACGCCA 22778 28 89.3 32 ......GT......G............. TTCAAGCCCGCCGCAGCGATCGCGCTTTCCCA 22718 28 100.0 32 ............................ TTTTCAGCGCGGCTCGCATAGACCCCGTAGGC 22658 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.3 32 CTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CACAGGAAACACCATTTCTTATGAAAGGTATGCCAACGACAGCGAGCGCTGTTGCCGGCGGTAGCTCTGGCCTCCCTGAAGGATGGCGAGCAAGCCTTGCCTAAAAAAAGACCTTGGATAATTGCGTTTATGCAAATGTTTCCATAAACGCAAGGCCTGGCTGTTTGCGGACACCCCGGACGGCGCGCACGCCAGCGCACTGATCTACTCGCTGGTCGAGACCGCCAAAGCCAATGGCCTCGAGCCCTACCTCTGGCTGCGAAACGTCCTGCGCGACCTGCCCGCTGCGACCACCGTCGACCATTACGACGCCCTTCTGCCCTGGAATCAGAAACCAGCGGATTTGACCATGGCGTAGCTCTGCCCGGAAGGGTGGGGTTCATGGATCGGTTACGAAACAGGTGAGCGTCACCATGTACAGACCGCCGC # Right flank : CGACGTGCCGCGAGATGCTCGGCCGGCTCTGCCGGTGACTGTCGGCCAGGGTTTTGACGGCCCGACGCGGCCTTCGTCATTCTCCTCGCCGCCCAGCCTGCAGTACCACGTACTCCCGCTCGATCTCGCGCTGAAACGCCGGCGGCAGGCGGGACCAGAGGTGGACTTCGACCAGCATCGGCAGGTGGCTGTCCTGGAGCGCTTGCCGCAACTCGCACCAGCCGGCGACATCGGAGCGCTGCTCGGGCGCGTAGCGCAGCACCAGATCGAGGTCGCTGCCTTCGTGTCCGTTGCCGCTGACCCGGCTTCCGTAGGCCCATACTTCCGCGTCCGGCACGTAGCGCGCGAGCAAGTCGCGCAAGGTGGAGAGGTAGCGCGCCGGCAGGTCGAGCCGCGACAGTTCAAGCTGCGGCATCGAAAATTTCCTTCAGTTTGACGGCGAGCGCCCGCACGTCGGCGAGGTAGTCGGGCAGAAGCTTGAGCGTTTCGTTGGCGAAGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 52888-48039 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRX01000032.1 Rhodocyclus purpureus strain DSM 168 scaffold0032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52887 29 100.0 32 ............................. CAGGCGGCCAACGTGGGGTCGGCTACGGCTGC 52826 29 100.0 32 ............................. TTCATGCGGTTGGCCCAATCAATCCGGGCCAG 52765 29 100.0 32 ............................. TCCCACATTACCGGGGACGTGGTGGCGCATTA 52704 29 100.0 32 ............................. CCTTTTGGCCTTCCCGGCGTTCCCAATGGCGC 52643 29 100.0 32 ............................. ATCGGCGGCTTCCACTACGCCCCTGGCGGTAA 52582 29 100.0 32 ............................. GGCAGGATCTGGCGGCAGGGCGATGCCCGTGT 52521 29 100.0 32 ............................. GTGTCGCAACAGATTTCGAGTTTTCAGCAGAC 52460 29 100.0 32 ............................. CACGCCAGATCGTCGAAATTTGTCCTGCCTCT 52399 29 96.6 32 ............................A TTGGTATTAGCAGAGGTTATTGCATAAAAACC 52338 29 100.0 32 ............................. TCTGGGGAGACAACAACCATGAGCATCACGCA 52277 29 100.0 32 ............................. CCGGCGCACGCGACCGCGCGCTGCTGGTGACG 52216 29 100.0 32 ............................. GCTGTTTAAGCGCGGCTGGGGCGAGTTGGGTA 52155 29 100.0 32 ............................. ATAATCAGCCATATATCAAGAGTGCGCCAGTT 52094 29 100.0 32 ............................. CAAACCGACCATCGCGGGCCGCTGCCGCGTCG 52033 29 100.0 32 ............................. TCGGGCAGGCGCGCGCGGCGTAGCACGATCTG 51972 29 100.0 32 ............................. CGTTGCGCGATGACGGAATCGAGGTCCGGCGC 51911 29 100.0 32 ............................. AGCCCAAGACCAGCGATTTGCTGATTCGCCAG 51850 29 100.0 33 ............................. TAATTGCGAGCCTTCAGCTCATGCTTCGCAAAC 51788 29 100.0 32 ............................. ATCCTGCGTGACCAGGCCGACATCGACAACCG 51727 29 100.0 32 ............................. CGATCCTACCGGAAGAACCGCTCCGTTCGTAG 51666 29 100.0 32 ............................. CGAGTTCGACGGGTGCGGCAGTGGCAGCGACA 51605 29 100.0 32 ............................. GCAACGGAAACGACGCCAACGATGGCCTGTCA 51544 29 100.0 32 ............................. CCGACCAGGCGATGGGACAGGCGTGGGCGCAC 51483 29 100.0 32 ............................. GAACAACTCACGGAGCGCGCGCTTATCTCGAG 51422 29 100.0 32 ............................. ATTCGATGAGACTCAGGGATTTTCGAGTCAGT 51361 29 100.0 32 ............................. CAGTAACACGCATTTTGCATCCTTTCATAAGT 51300 29 100.0 32 ............................. AGATATGGAGAGGCTTGGCGCCTGGTAGGTCA 51239 29 100.0 32 ............................. TACCAAATCTCGTATCTGCCGTCCGTCGTCTT 51178 29 100.0 32 ............................. CTGGCGATGCAGATGTACCAGGAGGGCGGCGC 51117 29 100.0 32 ............................. GCGCACTGCCGGGCGCGAGGCCGGACAGATCG 51056 29 100.0 32 ............................. TCTTTGTCGATGCTCGCCGGCCGTTGCGAGGT 50995 29 100.0 32 ............................. CGATCAGCCAGTCCAGCAGCTTGCCGGACGGA 50934 29 100.0 32 ............................. AGTTTAGGCGCGATGAGAAGCGGGGCGAATTC 50873 29 100.0 32 ............................. GCGTTCTTGAGTATCGACAGGATCGCCATGCG 50812 29 100.0 32 ............................. TCACCTCGAACGATCGAATCATGCCAATCGAC 50751 29 96.6 32 ............................A GGATTTTCTGTTAATGCGTCTGCTTCGGCTTA 50690 29 100.0 32 ............................. CACATTTCACGGTTTCCGGTTCGCATAGGCAT 50629 29 100.0 32 ............................. CCGGACCACTACGGCGAGACCATGAGCGTGCG 50568 29 100.0 32 ............................. GCGTGCTTCATCATGTCAGTCACGGCGCCCTG 50507 29 100.0 32 ............................. ACCCGCGTGTGTTTAAGACCTTGGACGCTGCG 50446 29 100.0 32 ............................. TGCGGGAGCTTGCGGGCCTTCGCACTATTGCC 50385 29 100.0 32 ............................. TTGGCGGCGGTGGTTGTGCGTCTCCGTCGGTA 50324 29 100.0 32 ............................. GCGCCTCACACGGCGTCATGGATATAGCCTTC 50263 29 100.0 32 ............................. CCATAGAGCCTTGAATAACAGAACCGCCACAC 50202 29 100.0 32 ............................. TCGGCTTCGACCCGGGCGGCAAGGATCCGATG 50141 29 100.0 32 ............................. CGCTCGGTCGAGTCCATCGAGAGCTCGATCAG 50080 29 100.0 32 ............................. GGCATCGTCGCGCTCGCGTTCTGGTTCGGCTC 50019 29 100.0 32 ............................. GCGGAGGCGATGGACGCGGCCGAGGCGATCGC 49958 29 100.0 32 ............................. GCAGCGGCCCAATGCAGTGCGGGGCGTCCTCT 49897 29 100.0 32 ............................. GAAACGACCATGTTCGGATTCGGTGCAGGCAC 49836 29 100.0 32 ............................. AGATGGCGGCTGCCAGGCTGGCGGAGGAGCAA 49775 29 100.0 32 ............................. CCATACAGGCCGTGGGCGGCGCCGGCGAACAC 49714 29 100.0 32 ............................. AAAGTGCGCGCGATCACGCCGCACCAGGTCGA 49653 29 100.0 32 ............................. ATCGGTTAATCCGAGCTGCGCCTAGGGCTCGC 49592 29 100.0 32 ............................. GGCTTGCCCTTGTTCCACGGCGCCTGCCCCTT 49531 29 100.0 32 ............................. CACCCGATATTAAAACCGGCTTATACAAATCG 49470 29 100.0 32 ............................. ACGATCTTGATGGGGGCCATCGTCGCTACTGA 49409 29 100.0 32 ............................. CGAACGATGGAACGGCGCTCGAGCAGGCGGTA 49348 29 100.0 32 ............................. GGCACCGGCAAGACGCGCACCGCGATCGGGCT 49287 29 100.0 32 ............................. GAAACCATGAAAGCCAGGATTACCGCCGCCGC 49226 29 100.0 32 ............................. GGACGGCGACTATCGCGGAAACCATGACGAAA 49165 29 100.0 32 ............................. CATGATCGAATTCTGGCCCCCATTGCCGGCGA 49104 29 100.0 32 ............................. TATATTTGATAGCTTCCAGATATCCCGCGTCT 49043 29 100.0 32 ............................. CCCGTATCGGACGACGGCGCAGTCATCGCAAT 48982 29 100.0 32 ............................. ACCACGGCGCACGGCGAAAACCTCAACAGCTA 48921 29 100.0 32 ............................. TCGAGTAGAAATTCACCGTCTGAGCACTAGCC 48860 29 100.0 32 ............................. CACCCGGTCGGCGCTTGCGCCGATTCGCTCTA 48799 29 100.0 32 ............................. GGCCTGGGCGGCGGCGAGCGCGGCCTGCAAAT 48738 29 100.0 32 ............................. ATCCTGCTGGCAGGTCGCCGACTCGGCGACGT 48677 29 100.0 32 ............................. GGTGCTCTCGCCAACTTCGCATTCTTTGGCGA 48616 29 100.0 32 ............................. GACGGGATCATCCTCGAAGAGGCGGTCGAATC 48555 29 100.0 32 ............................. GCGAAGGCAAGCGCGAACCTGACGCCAGCGAA 48494 29 100.0 32 ............................. GACCCGTGAAGCCGGCAAAGCTGTTCTCTGAC 48433 29 100.0 32 ............................. ATCGCTGAGCTGGCCGTCAAGGCGGCACAGCA 48372 29 100.0 32 ............................. CAACTCTTTTTGCTCGCGCCCCCACGCTCGGC 48311 29 100.0 32 ............................. GCCCAGCTTGTCAAAATGGCCCGCGCGATGGG 48250 29 100.0 32 ............................. GGCCGCATCGATGCGTGGTGCGCGGCCAATAC 48189 29 100.0 32 ............................. TACGACGGCACGACACCGAAAGAGGCCGCGCG 48128 29 100.0 32 ............................. TAGTCGAGCAGCTCGCGCTTGTCGAGAACCGG 48067 29 93.1 0 ............A.............A.. | ========== ====== ====== ====== ============================= ================================= ================== 80 29 99.8 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : TGCTGGAGCGGATCATTCCCGACATCGAGGAGGTTCTCGCCGCCGGAGAAATTCCCCGCCCGCAAGCGTCTGCGGACGCGGTCGGCCCAGCCATCCCAAATTCGCAGAGTATCGGCGATGCTGGTCATCGTTCTTGAAAACGCCCCGCCCCGGCTGCGTGGCCGGCTGGCGGTTTGGCTGCTCGAAATCCGGGCCGGGGTTTACATCGGCAACTATTCGCGTAAGGTACGCGAACATATCTGGGCACAGGTCGAAGAGGGCATTGAAGACGGCAACGCGGTGATCGCCTGGAAGACGAATAACGAAGCCGGCTTCGAGTTTCTCACGCTCGGCGCGAACCGCCGCCTGCCGGCTGACTGGGATGGCGTTCGCTTGGTGAGTTTTTACCCGGAAAAAGACGTCGATCTTTAAGAATCCGGAAAATTACCTCGTCATCGGCTTTGGTTGGTATTTTTTGAGGCTCGAAGAATTTCCATGTTTTTCATGGAGATGGAAGAAGT # Right flank : CGTCGTGCGTGCATTCGGCGCCCAGCGTGCGCCGTCCGGGCCGGCCGCGGTGCCGAAGCGCTCTTTGGCGCGCTCCATGATGTCCTCGCCGATCGCCTGCAGGACCGGCTGCGGCTTGCCGACCTTGGCGACCAGGCCGCGCAGCTTGGCGAGGACTTCCTGGTCTTTGACTTCGACAGTGAAGGTTGTCACGGAGCATCTCCCGTGGGATGCAGTAGAATGAAAAACATAGGCGGATCGTTTCGGACGTTTTGGTCAGGGGGCGCGAAAGCGCAGCATTGGCTACCGCCTGCTCTCTTACTCGGTCTTGATGACCAGCGACACCAGCGCCAACAGACGGCTGCGCTTCCCCGCATTGATCCCCATCGATGCGCTTGTAGGCCACGATCGAATCGAGACTCCGCGCGCTCCCCGCACACGCGGGGATGAACCGAGCGTCTTCGAGTGTCGCGTCGATCAGATGCAGCGTTCCCTGCACCCGCGGGGATGAACCGGAGGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28083-32201 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRX01000018.1 Rhodocyclus purpureus strain DSM 168 scaffold0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28083 29 100.0 32 ............................. TATCTTGTCGAGCGCGTCAAGGCCATGGGCGG 28144 29 100.0 32 ............................. CATGCGGGCATAGCCGTCGCGGTCAGGTAGCG 28205 29 100.0 32 ............................. GACGCCGGGGATTTCTTCACCCGCCTCAACGA 28266 29 100.0 32 ............................. GTGACCCAGGCCGCAAGCCGCGACGTGCTCGC 28327 29 100.0 32 ............................. CAATCAAGCACGGCCTGCGCGTCAGCCATACT 28388 29 100.0 32 ............................. GGCCCGCACAGTGACGCGATGACCCCGCGCAT 28449 29 100.0 32 ............................. GAGCTGTGGCCGTTGATGGGCTACGCGCTGAA 28510 29 100.0 32 ............................. GTCATCAAAGGCATTTTCGACGCCTGCAATGA 28571 29 100.0 32 ............................. CGCTTCCAGACCTCGTCCGAGTCCAGCACCGG 28632 29 100.0 32 ............................. GTGGTACGGGAAATCTCCGGACTCCAGCGGGT 28693 29 100.0 32 ............................. CGACCTGACTGCACTCGGCGAGGCCAGAGACC 28754 29 100.0 32 ............................. GCTGCCGGCGCGCGTCAAGGTCGCCGGCGTCG 28815 29 100.0 32 ............................. TCGCCACCAATCTCCGCGTCGACGGCGCCGAA 28876 29 100.0 32 ............................. GCTGCCATGTTACGAGCGTGAGCCCGAGCGCA 28937 29 100.0 32 ............................. CCCTGCCGCGCGCTTGCAGCAGCGCCCGCTCC 28998 29 100.0 32 ............................. TACATCAAGGAAGGCGACACCTTCACCGCCAC 29059 29 100.0 32 ............................. CATGCCGATACGCCCGTCCATGACCGCCTGTT 29120 29 100.0 32 ............................. TGGGGCAAGGACTGGCTGCCGCACGACGCCAA 29181 29 100.0 32 ............................. CGCCAGATAGCGTAGCGCGTCGGCGCCGTGTG 29242 29 100.0 32 ............................. CGACGTTACGAAACGTCCGGGAAATGATCGGT 29303 29 100.0 32 ............................. GTCACCGCCAACCCCCTGAGCAGACGAAGCTA 29364 29 100.0 32 ............................. TTGCCTCGTCTCGTCCCAGGTCGAAGCGAGGA 29425 29 100.0 32 ............................. TCGGAATCTACCGTCTCAGCGGTCGCATTCTC 29486 29 100.0 32 ............................. TTCGCCGCGCTTCAGGAGGCAGCATGATCGAC 29547 29 100.0 32 ............................. AGCAGCTTCTCGGGCAGTTCGATGTTCATCGT 29608 29 100.0 32 ............................. CGACCGCGGCGTGAGGATCGCTGCGGAAAAAA 29669 29 100.0 32 ............................. TTCTTGGTCGTCGGCACGCGCGGCAGCACGGC 29730 29 96.6 32 ............................A GTACCTGCGTCGGTCGATCTCGACTTCCATGA 29791 29 100.0 32 ............................. ATGACCGCCGCGACGGTCAAGCAAGACGGCCT 29852 29 100.0 32 ............................. CGCGCAGCAGCGCATCGGTCAGGCTGCGATTG 29913 29 100.0 32 ............................. GCGTTCGTGACCTCCGCCAGCCCGAACGGCGT 29974 29 100.0 32 ............................. CGACTCACTGCCGACCCAGAGGGCAATGCCCA 30035 29 100.0 32 ............................. GTGCCACCGCACAGCTTGAGCAGCTCGGCAAG 30096 29 100.0 32 ............................. CAACCTGCTAGGAGTCTGATCCATGAAGCTCC 30157 29 100.0 32 ............................. CGTGCACACGTCTGCACAAACAACGGAGTAAG 30218 29 100.0 32 ............................. CTCGACCGCCTGTCGACCCTGTCCTCGTCGGT 30279 29 100.0 32 ............................. TTGGCGCGCTCCGCCGGGTCTTCTTCCTTGCG 30340 29 100.0 32 ............................. CAGATCCTCAGCTTCTTCGCCGGCTTCGGCGA 30401 29 100.0 32 ............................. TGGTGCGCGTCGCGCAGGCAGAGCAGGAACCC 30462 29 100.0 32 ............................. AGCTGGGGCGACGCGCTCGGATTCGACGAGGC 30523 29 100.0 32 ............................. TTATGGGGCGCGTACTGCGACGACGCGGTCCT 30584 29 100.0 32 ............................. CTCGGATTCGCTCCCCGCGCTGTGGGTTACTG 30645 29 100.0 32 ............................. CGCAAAGACCTCGAAGCAAATGCCGTTCAAGA 30706 29 100.0 32 ............................. GCCGAGACTGGCGCCGAAAGCACCGAACGTGC 30767 29 100.0 32 ............................. GTTACCGCGTCCATCGTCATCGACTCCTCGCC 30828 29 100.0 32 ............................. CATGGCAACCCTCCCCTCCGGCACCATCCTTT 30889 29 100.0 32 ............................. TGTGCGACGAGTTGCCGGCCGCCGCCGCCGAG 30950 29 100.0 32 ............................. GGGCCGGCGTTTGACGCCGGCCTTTTTATGGT 31011 29 100.0 32 ............................. CGCCAGGGCGCCCCCGAGGGGCCGTTCCGCGC 31072 29 96.6 32 ............................G CAATGGGTGCAAAGGGCGGGCCGGCTGTCGAA 31133 29 100.0 32 ............................. GATTGGGCCGAGCTTCGGAAGCTCGGCTATCC 31194 29 100.0 32 ............................. CGACGACAGCGAACCGCCGCCTATCTGCGCCC 31255 29 100.0 32 ............................. TCGGGCCAGGTGATCCCGATCGGCGCCGATGC 31316 29 100.0 32 ............................. GCTGCCCGATCAATCCTTTTTGGAGTCTCTCA 31377 29 96.6 32 ............................T TGCCCGAATGCGCCCCGGCGGCGCTTCGCGGC 31438 29 100.0 32 ............................. GCAAGGGGCGCGAGTTCGGCGCGTTCGTGAAC 31499 29 100.0 32 ............................. CAGGTCGGCGCACGAGCAGCGTTACGGTAGAA 31560 29 100.0 32 ............................. AACACCGCCGCCTATGTCGCCTCTGTCGCTGC 31621 29 100.0 32 ............................. CAAGAACGGGGTGGTACGAATTGCTTCCGGCG 31682 29 100.0 32 ............................. GGTGAATGGCGAGCCGTCGAACGCCGTCATCA 31743 29 100.0 32 ............................. CTGCGGCTCAAGCTCACCAGCCGCCGCCGCAT 31804 29 100.0 32 ............................. GGCGCCGGAAACAGGCGCAGTGCCACGGATAG 31865 29 96.6 32 ............................G TCGGCCATTTCGGCCAAATCCTCGTCCGAAAT 31926 29 100.0 32 ............................. GGGCGGGCGCCCGGCTTGGTTCCGGTAAAGCC 31987 29 96.6 32 ............T................ TACCAGCTCCCGGACGGCTCGGTGCAGTGCTG 32048 29 100.0 32 ............................. TGCAGCATCTCGGTACCGAGACTGGCCGGGGT 32109 29 100.0 32 ............................. TGCTCTTCGGTCACTCGCGCATACCACGGCCG 32170 29 89.7 0 .......................C...GA | CTT [32192] ========== ====== ====== ====== ============================= ================================ ================== 68 29 99.6 32 GGTTTCCCCGCGCCAGCGGGGATAGGCCC # Left flank : AAGAAATCCATCAATGGCGACGAAACCAGCATTGATCGGCTGGTCAGGCGTGAAGCATCCACCGTGTTTCGGAAGCAGGATGTGATCGCCACGATGATCGACAAGATCAAACTGGTGCTGAGGACAGAGGAGAGCGATGGCGCTAGTAGTGATAGTGACGCGTGACGTGACCTACAGATACCGGGGCTTCCTCGCTTCGGTAATGCTTGAGGTTACGCCGACCGTCTACATCTCGCCGCGAATGAATCCAGGTGTCAGAGCACGGGTCTGGGAAACCGTTTCCGATTGGTATTCTGCCGAGCCGAAGGGCAGTTTGGTGATGGTCTGGCGAGATTTGAACCAGACTGGCGGGGTCGGTATCGAGACGCTCGGGGAGCCTCCCCGAGAACTCGTCGAGGTCGATGGCCTTTGGCTCGTTAAACGGATGTTATAAAATGCTCTTTAAAAATTCGTATGACTTTAACGTTTTTCCTTTGTAGATCATATGGCTATCTACAAGA # Right flank : AGCGGCATAGAGGATCTGTGATCGGCATATTGGAGCCACATTCGGATCGGCGTAATGGCGCCAGTGAGGCGTTGAAGTCCGAGTACTGGAAGCGCTCGCTGTATGACTTGCGGGGCCTGCATGACGCGCCGGCCCCTTGACGCCGCTGGGTGATCGTCCCGCTCTCCATGGTCCCAGCTTCTGCCTGAGGCTCATTTTGGACCAGATGGAGCGTGGCATCGGTCCAGCGGCCACTTCCTGCCTGTGTGCCGCATTGGCGCTCTTCGAACGAGCGCCGCCATCATTCCCGGCAGCGCTCGGGCGCCACACCCTGATCTAGCTGCCGTGGCCGCTCACCACATCAGGTCATCCGGCACCTGAAACGCGGCATAAGGGTCGTCCGCGTCGGCCTCGGTGCCGGTTTTCCTGATCTGCACGACGAGCGTGGGTTCGCGCTCGGCGATCTTGTCGGCGATCACCTTGGGGACCAGCTCGATGCTCTCGCCGAGGCAGACGATCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCCCGCGCCAGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 7234-6759 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRX01000043.1 Rhodocyclus purpureus strain DSM 168 scaffold0043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 7233 37 100.0 36 ..................................... AGCTCCAGTTCGCGCAGCCGCAGCCCGTACTCGCCC 7160 37 100.0 35 ..................................... ATCACCAGCATCGTGAGCCGGGCCTCGAGCGTCGC 7088 37 97.3 37 ............T........................ GACCGGATACCGGATCGGTTCAGGGGGCCAGTCGGTG 7014 37 100.0 36 ..................................... GCGCAACTCGGCGAACTGCTGGCAGCGCCGGACGAC 6941 37 100.0 34 ..................................... TGCAGGGATCAACTGCAGGACTTCGGCTTCCAGG 6870 37 97.3 38 ............T........................ AACGCCATGATCGACACGGCGATCGAGGCGGGGATCAT 6795 37 91.9 0 ..............A..C..................C | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 98.1 36 GCAGCACTCGCCCCGGAAGGGGCGACTTCGTTGAAGG # Left flank : GCCATCTCGAAGGTCCGGCCCGCGACTGGGTCAGCATCACGCCGCTGATCCTTCCCGGCGATTATGGCGGAGGCAACATCCGTCTGATGACCCGCCTGCTGCACAAGGCAGTCCGCGAGGCCGGAATCGATGTCGGACTGCTTGAGCAGGTCGAGTTTTCCAAGACCGGGTTCCTGCGCCAAGCCGCACGGTTGAGCGAAGTCAGGCTCAAGGACTGGAAAGCGAAGAACCTCATCCTCTACCATGTGCGACTTCGCTTCCGCACCGCGCTGCACGGGCCGATCGTCCTCGGCCGCGGCCGGCACTACGGCCTCGGCCTGATGTGCGCGGACCTGAAGTGACGGCGAAGCAGTGGGGGTTTCGCGATATGCGAAATACGCGGCCAATCAGTGGCTTGGCACGCCGAACGCCGTGCCAGGCCCGAGTGCTGCCGCGAGCGACCGGAGGTTCGCGGATCCTGTCTGAAAAAACCAGCTACCTGAGAGAGTTGCAGGAGGGCT # Right flank : GGCTTGGAAAGTCTCCTGCCCTGAACCCGCTTCTCCTCCATCCATAGCGCCGATCGACGGCGTGTCGGTCCCCGGTCCGCCCGGCGCACCATGAAACCGGACGGCAAGGTATCCCTGGCGTCATGCGCGTCGCACGGAGGTATCTCCGCACCCGGCCCGCTCCCGCCTTTCCGCCATCATTTTTCGCGACTTGCTCTGGATCAAGGAAACGCCGCCTCATGCTCTCTAGAGTGCACTTTAATGCATCAAGAGAACTATGTTGCATTTCACGCCGGGGAACACCGGCGCCGACTGACTCTGTGTAGGAGGAGATTTCCTGATGAGCGATGGTTTGTTTGATCAGTTCAAGCACTGGTACGAGAAGCGGCATGAGTATGCACGCGAATGGAAGCTGCGCACAGGGGGGCAGGTGGTGGCGACGATGTGCACCTACACGCCCGAGGAACTGCTGATCGCCGCCGGCATGCTGCCGGTGCGCGTGCTCGGCGCGCACGAGCCGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCACTCGCCCCGGAAGGGGCGACTTCGTTGAAGG # Alternate repeat : GCAGCACTCGCCTCGGAAGGGGCGACTTCGTTGAAGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.20,-15.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //