Array 1 423456-424742 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFC01000002.1 Streptococcus constellatus strain NCTC11325, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 423456 32 100.0 34 ................................ AGGAACGGCCACTCGACGTTGGCCCATTTTGACT 423522 32 100.0 35 ................................ GTTGCATAAAAGCTGTTATTACCTGTCAAATCCAG 423589 32 100.0 34 ................................ ATGGACGAAAATGGCGACAAGTTACTAGCTAAGA 423655 32 100.0 33 ................................ TCTAGCAAATATAGCCCATGGCAGTCTGACTTT 423720 32 100.0 33 ................................ CAAAATGCTTGTGAGTGCACCTTGCATCAATTT 423785 32 100.0 34 ................................ ATCGATAAAACGTTTTTGCCAATCTTCCATTTTT 423851 32 100.0 34 ................................ ACTCATGGATTGGGATAGCGACAACGTGATTACA 423917 32 100.0 33 ................................ TACAAACAAAAATTAAAGAAAACAGTCTACACA 423982 32 100.0 34 ................................ AGACAAGAGGAGCCTTAAACAATGCGCATGATGT 424048 32 100.0 34 ................................ ATAAAGCTAGTGTGTACGATGTGATTGAGTTATT 424114 32 100.0 34 ................................ TTCGACATTTAATCACTCCCCGTAAATAGCAACA 424180 32 100.0 34 ................................ AGACCTGTATAGCTCGTTTGAAATGATGTATTTC 424246 32 100.0 34 ................................ TATTTCCAAACTCTGTTATTTTACTAAAAAATGT 424312 32 96.9 34 ........T....................... AATAAAAGTTTTGGAAAAACTATCTTTAAATTTA 424378 32 100.0 34 ................................ ATCTTGATTGGATATTAAATTTAAAGACCGATTT 424444 32 100.0 36 ................................ ATTAAAAATATCTATTTTTTGTAACGTTGGATTTTT 424512 32 100.0 35 ................................ AAAATTTGCGAAAATGCTTGCCTTTATCGGCGAAG 424579 32 100.0 35 ................................ TGAAATAATAAAATAAATATCTTGTTTTTTCAAAG 424646 32 100.0 33 ................................ CGGATCGCCTAGCTCATAAACTCCCGCTGCTGA 424711 32 87.5 0 ......................AA...A.T.. | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.2 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CAAAGCAATTCGTGGAGAATTAGAATCCTATCCGCCATTTTTAATCTAGGAGTAAATTTATGATGGTTTTAGTAACTTATGATGTCAATACGGAAACTTCCGCAGGCAGGAAACGTCTGAGGCATGTCGCAAAACTTTGTGTTGATTATGGTCAGCGTGTGCAAAATTCCGTTTTTGAATGCTCAGTAACTCCGGCTGAATTTGTAGAAATAAAAAATAAACTGTTGACAATCATTGACCAAGAATCAGATAGTATACGATTTTACTTGCTTGGTAAAAATTGGCAAAATCGTGTAGAAACCCTTGGTCGAAATGACAGTTATGACCCTGATGTCGGGATATTACTTTTATAAAAACTTGTGTGCGAACCTAGGTTGCACATCAAAACCTAGGACATTCGCGCATAAAAACAGAATGATAGTGGCAAAAATCCAGTTTTTATTAAATGAAATAGCTCAATAGATTCTTAGATATAGTCACAAACGGTGCAACCATGCGCT # Right flank : TACACCTAAACTCTTGTTTGCTTTCAAAAACATGCTAAATTTTTCCGAGATATCTTGGCTTTGGATGATGCCAAAATTTTGCAGAAATGTCTCGAGTTTTTGACTGCATTTTGCGAAACTCTCTTACTTGATGGAGAAAATGACCTGTCTAGTGAGGAACTGTACCAAAAATTAGGTTTGGATAAATAGCGGAGTAAACTAACATCTGAGGACAGAAAGGTTCCAACTATACATATCTGAAGTAGAGTACCTGAAATAATAAAGTTCCCTATATTTCCAACAAATAAGTCAACATTACTTCAACAAAAAAACAGCTCAATAGTAAAGCTGTTTTTTTTACCTATTTGAAAGTTTAAAATTGTGATTGGTCTTGTATTTACGGATGATTAGACGTTTAAACTTCAACATTATAAAGATCTGTTGATAAATAGCGTTCGCCATTATCTGGAGCAAGAGCTAGAATTTTTTTACCTGTTCCTAGTTTTTTGGCTACTTCAAGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1300254-1299162 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFC01000002.1 Streptococcus constellatus strain NCTC11325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1300253 36 100.0 30 .................................... AAATGTAATATCGCTACTACAAATGACTGT 1300187 36 100.0 30 .................................... CTTTGATTACATTTTGAAGGCGCAAAATAA 1300121 36 100.0 30 .................................... TGCTCTATATCTTGAGCAAGCCGGATGACT 1300055 36 100.0 30 .................................... TTCATGTTGATAATTACTTCGACGATGTTT 1299989 36 100.0 30 .................................... TAAAACGAAACCATGCAAATATCCTTATTC 1299923 36 100.0 30 .................................... AGCAAGTCTTGCCAACCATTGGCTACCCTA 1299857 36 100.0 30 .................................... GGTTGGATGTGGACTTGGTCAATGGACTGG 1299791 36 100.0 30 .................................... AACATTGCAAGAAATCTTAAAAGAGATGAC 1299725 36 100.0 30 .................................... TGGTGATGGCTCTGGAGCTAAGTCACGCTT 1299659 36 100.0 30 .................................... TTCAGTAAATGAAGATTCTATAAAATCTTC 1299593 36 100.0 30 .................................... CTTACGTAGACGGTATTTCTTCGCATTTAT 1299527 36 100.0 30 .................................... AAAGCTCCAGCAATGATTGTCTTTCACGCT 1299461 36 100.0 30 .................................... ATTTATCGTTATCGGTATGATAGCAGGCTA 1299395 36 100.0 30 .................................... CGTCCTGTGCAACTCTATGCTCTTAACTGA 1299329 36 100.0 30 .................................... TGGTGGTAAAGGAAAATCTTCATCTTTTCG 1299263 36 100.0 30 .................................... ATGAAACATCACTAGCATCTGGCGGTACAA 1299197 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCTGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTGAGTGATACTGTTTTTGAGAAAAGTTTAGAGGTTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATGTGTCATGTTATCTGTCTGAACATAAACTAGCTAAATTGGTGGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGGTATAATATTAACAAATATAAGGAATCGTTCGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTATGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : TAACCTATTCTTTTCTTCCAAATTCCCAAAATTCCCAAAAATTCAGACACAAACCATCTGATTGTAAAGCTTGCAAATTTTTTTAATCGTGCTATAATATTTCTTAGAGACATACCGCTGGTTGGAATTTTTTAGAGAGCGCGTGGGGCTGGAAAGCGTGTAGAGGAAGGCAGTTGGGACTACTCTAAAGTAACTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAGTTTTTGTTGTACATAAATGAAGGTGGAACCACGTTGCGACGTCCTTTTATGGATGCCGCTTTTTATTTTGTCAGAAGGAGGAAGAATGATGCTTTATATGATTGGCGGATCGCCTTGCAGCGGGAAGTCAACAATTGCTTCACTTCTTGCTAGACAGTATCAGCTGCTTCATATCAAGCTGGATAATTTGGTGGACGAGATGATGAGTCAAGCAAGTGTAGATTCACAGCCGATTTGCCTTCTTAGACAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //