Array 1 3561-2737 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCD01000002.1 Caldicellulosiruptor bescii strain RKCB128 Ga0154049_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3560 30 100.0 36 .............................. CGATGAAGGATTGTAGGATTTTTGCAATATATAAAC 3494 30 100.0 35 .............................. TATAATAGTTGCTCGCATAGGAAACTCTATACATT 3429 30 100.0 36 .............................. AAAGTTTATCTATTTCTTCTTGCGTTTTATTTGTTT 3363 30 100.0 37 .............................. AAATATTTAGCGCTTTGTCTTTAAATTGAGAATATAA 3296 30 100.0 37 .............................. GTCCCTCACAACGATGAAACAATCAAAAGAATCTATT 3229 30 100.0 36 .............................. TAAACAAATTAATGTAGCTAAATTTGTCGCCTTGTA 3163 30 100.0 36 .............................. TCCAGTGGGATGGAAAGAGATGAAATAATGTCAAAA 3097 30 100.0 37 .............................. AAAATAATCAAAGATTCTTTTACCCCACCTACACATC 3030 30 96.7 36 .............................T CAATATCGAGAATAATCTTTCTTCCTTCAGTAGTTT 2964 30 100.0 36 .............................. GATAATGAGGGATTGAAAGTTGGTGAGCTTGTGAAA 2898 30 100.0 36 .............................. TTCCTTGTATTCGCTACAGGCAAAGTGATTTTACCA 2832 30 100.0 36 .............................. TCATAATTTAATCTTCTGCGTGTTTGTCTGCGCAAA 2766 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.7 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : CTTCTCTTCTATTTTTTGAGCTGGCAATTTTTTAGTTTCTGTTGTAAGTTTAATCATCTCAAAGTTTATTTTATAACTTTTTTTGGCAGTTGAAAAGTTCAAAAAATATGCGAACTTTTAATAATGATAGCAATTATTTAGTCAGTGTGCAACCTGTATAGTCATTATATTATCGTTCAAAATAAAAAGATATGTGTCAAAAATTTAATAAAACAAAATAATACTTTTACATTCATTTTGTCCTTAGATTTACTTTTATGTTTGTTTATATTCTTCTATATGGCTCCATGTGTTTAGAAAAATAAGACTTAAATTAGCTTTTGTATTTACCAATTCCTGTCGACCTGCAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGACAAATTTTGGCATGTATTGACTTGTGGGCTTTTGAGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : GTTATTATGAAGATTTTGACACTTTAGAGCAAGAACTTGATACAAATATACTTGACAATTTTGAACTTGATGAGGCGGCACCATTTTGATGGTATATGAAGTTACTTATAACAATTCAAGACTTGTGTTTGAAGGAAAAGAAATTAATTATTTCAAGATTTTAGAGGCTTTAGATAAGCTTAGAGATTTGCGTGACTATATTGAACTGTTTTACACTGAGTATTCTGGTCTTCCTCTTACCTCTCTTCCATATGATGTTTTACTTGATATTTTTACAAACTATCTTGACTTTATAGGTGTACAAATAAAGGTTATAGGTAGGTAAACTTTTTTATGGGTGACAAGGCAAAAATAATTGAGCTCATGAAAGCTATTAATAAAGCTAAAGGTGGAAATGTGATAGGTTTTTTGGTAAGATAGCACCAAAATCTATTCCGGTAATTCCAACTCAATCACTTATTCTGAACAAACAGCTAGGTATTGGTGGATTTCCAGGTTTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 32140-29335 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCD01000002.1 Caldicellulosiruptor bescii strain RKCB128 Ga0154049_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 32139 30 100.0 37 .............................. AGGCTTTCTAAAATTTCTTCAACGTCTTTTTTGCTTG 32072 30 100.0 35 .............................. AAAAAGCTGAGGAAAGTGATTTTCTATCAGGACGA 32007 30 100.0 36 .............................. TTGCTAAAAATGTCGCAAAAACCGTTATACCAGCTG 31941 30 100.0 35 .............................. TGCCTTATTGATGAATTATCTATGATAGATTTAAA 31876 30 100.0 36 .............................. AGGGAATTGTAAAGAAGGAAAATACCAGCTGTGATG 31810 30 100.0 35 .............................. CAATATTTTCATAGCTTTCATACACATAATTTTCA 31745 30 100.0 36 .............................. ATAATTTTCATTTGTACATAAATGGTGTTGAAGCAA 31679 30 100.0 35 .............................. AATCCTTTTAACCTCATGGGTCGTGTAGGGAGTAG 31614 30 100.0 35 .............................. TCTTAAGACCACTTTTTGTTTTAACAAGTTTAACA 31549 30 100.0 35 .............................. TTAACCTCTTGTCTCCATCAGGAACTGGAGCAAGA 31484 30 100.0 36 .............................. CGGGGATGTTTTTACCTGCCCAATTTTCGATGACTA 31418 30 100.0 36 .............................. ATTTCACAGATGATGCAGTTAGGCGTTCTTACAATA 31352 30 100.0 37 .............................. GCTGGCTGGGTTCTGTTAGTTTTTTTCAGTGTCGCCC 31285 30 100.0 36 .............................. GTCTTTTATCACTTCTCGTTTCACATCCCCTACCAA 31219 30 100.0 36 .............................. AATACATCATCAAATCCTCAAATTCTTGATCGTATG 31153 30 100.0 35 .............................. TTGTACACTTCAGGGTCTTTTGGGACAGTTCCTAA 31088 30 100.0 33 .............................. GCAAAAAATCAAGTACTTTTTTTATTTTTTAAA 31025 30 100.0 36 .............................. GCATTAATTCTTTTTCTGTTTCAGCTAACATAGCCG 30959 30 100.0 37 .............................. ATTTTTTGAATGAGATAATGCAGAAGACGAAAGGAGA 30892 30 100.0 36 .............................. AAGAAATAGAGAGAAAAAGAAAAGAAGAACAACAAA 30826 30 100.0 37 .............................. TTTGCTTTGCTTATCCCTTTAGCTTTGCTGCTTACTA 30759 30 100.0 36 .............................. CTATTTCAGTAGTTGCTAATGGTTTGTCAACGTCTT 30693 30 100.0 36 .............................. TTTTACAATTACTATTATACTCGAAATTTTTATTTT 30627 30 100.0 36 .............................. TAACCGGCTCTCCTGTTACCCTTATAACACTTGTTC 30561 30 100.0 36 .............................. GTGCGGTATCTGGAAAAGATTTTGTAATTCAAGATT 30495 30 100.0 36 .............................. AACGTTTTAAAAAGGATGGCTGAAGGTGAACGTGTT 30429 30 100.0 38 .............................. TGGAGAAATCAGGTAAACTGTCCATAACGTCCTCAATG 30361 30 100.0 36 .............................. GCATTAATTCTTTTTCTGTTTCAGCTAACATAGCCG 30295 30 100.0 37 .............................. ATTTTTTGAATGAGATAATGCAGAAGACGAAAGGAGA 30228 30 96.7 36 .............................C TAATATAGCAGAGCTATACTTTGTAGTGTTTCTTCA 30162 30 96.7 35 .............................C TTTTCATCTATGATGTCCATCAACTTTTCAACAGT 30097 30 96.7 36 .............................C ACAATGTACATTAATCTGTCAGGGAATATTGCTTTT 30031 30 100.0 36 .............................. AAGAAATAGAGAGAAAAAGAAAAGAAGAACAACAAA 29965 30 100.0 36 .............................. ATATTTGACCTTCTTACCACCTCAATCACCCTCTTA 29899 30 100.0 36 .............................. TAACCGGCTCTCCTGTTACCCTTATAACACTTGTTC 29833 30 100.0 36 .............................. GTGCGGTATCTGGAAAAGATTTTGTAATTCAAGATT 29767 30 100.0 36 .............................. TGTGAAATATTCTGTTTTGTTTCTTCTTCAAATATA 29701 30 96.7 36 .............................C CATCGAGTAATGCGGACTGCAACTTCTCATAATCAT 29635 30 96.7 38 .............................C CACACCTCACCTTCTTTTAACTGCTTTTCAATTTCCTG 29567 30 96.7 38 .............................C ACATAAGTAAAAACGGTAAAACTAAGTAGAACAAAAAG 29499 30 100.0 37 .............................. AAGAGCTTGAAGATTATATAAAACAAAAAAACACAAT 29432 30 96.7 37 .............................C TGACAATTAAAGCATATCAAAATGCCTCAGTAGCATA 29365 30 90.0 0 ...............G.........A...G | T [29337] ========== ====== ====== ====== ============================== ====================================== ================== 43 30 99.2 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAT # Left flank : TTTTTATAGAATCTTTCCAGTATCCATATATCTGAGAGAGCTTGGACATGGGCAATCATACCTTTCAATTTTGATTTATCTTTAAAATAGTTTATACCCCCATTGAGTGTGATAGTTATTTACATAAAATACTTTTATATAATACCTTTCGACATATATTGACATAATCCTCTATTTTAATGCAATTTTCAGAAAAATTGATTTTTTATTAGTTTTATCTTTGATTTTTAAATAATAATTGTGATTATTTTGCATTATTGTTATTACATTTTATTCCTTTTCAGCTTCTGTATTTAGTTTTATGAAATAAATTATGACTTTTGTATTTACCAATTGCTGTCGACCTGCAGTACCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : GAGTCTGAGTGTTGGAAGTAGAAGAGAAAAGGAGACCTTCTGTTGGGGATTTAAATTGCTACCAACAGGGTGGTAATATGGTAGTGCAAGTGCATGGTTTGTATGCTTTTACTTTGGAAATTAGGGAAATAAAAGAGTTTTTGCTTTAAGAATTGAATAAAAAGAAGTGTCTTCTTTTAGAAAACTGTGTTAAGGAAAGTTTCTCACCAATTTTATAAAAAAAGGGGCTTTTCATAGCCCCTTTAATCCTTGTCCGTGAACAAGTATAATCTTTTCAGGTTCTAAAATTCTTAATGTGCGTAAAATTTCAAAGTAGTTAGAATGAGCAGAAAGAGGAATATCAAAATAGTGAACCTCAAAATTCTTTATTACCTTTATCATCTCATGAATATACTGCTGTTCTTCTATATATCCGCTTTTGATAAACCCAAATGCACTGCCGTTCAAAAGTTGAACATACTTTACTGCAATGCTGTTTGGCTGAAGCATACCAGAGCTTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 56382-53125 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCD01000002.1 Caldicellulosiruptor bescii strain RKCB128 Ga0154049_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 56381 30 100.0 37 .............................. TCAATCTCCAAAACCTTTATATACTTAAAATCATAAA 56314 30 100.0 37 .............................. TCTTTACCATATGATAAGACTTTCCGCTTCCAGGTTT 56247 30 100.0 36 .............................. TTTATGATTTGTGTTTTTATTTCGAACTATGAGGAA 56181 30 100.0 37 .............................. ATAAAAGCAATTAGTTTGTAACTAAGGTCATCTTTGA 56114 30 100.0 35 .............................. CAGCTTCAATCTCAAGTTTGTCTTGTTCATAATTG 56049 30 100.0 36 .............................. CTGCTTGGTTGCTTCAAGCTCTAAAACTTTGAGCTC 55983 30 100.0 37 .............................. TATGCATTATTTATGACAGAAATTTAGATAACGAAGG 55916 30 100.0 36 .............................. CAATATCTCGTATCTTCTCACTTGCCTTGTCTGTTG 55850 30 100.0 38 .............................. TATCTTGCCTTAGTAACAATTGCCTTCTTTTGGTTCGT 55782 30 100.0 37 .............................. ACTTTATTATCGTTCACAAGGTAGATAGATTTGCTCG 55715 30 100.0 37 .............................. ACTTCTCGATTATTTTTGAAAATAACTTTTCCTGTAT 55648 30 100.0 36 .............................. ATGAACCTAGCATTCTTACAACTAAAAAACATAAAT 55582 30 100.0 36 .............................. ATTTTTCGACTTTGTTTGCATCGGTAAAGGATACAA 55516 30 100.0 36 .............................. TTCTTTTTAGGTTTTGTTGATTGTTTTGAAATTTTA 55450 30 100.0 38 .............................. AAATTAATAGATGTAGAAGGTGAACCTTTCAAATATGA 55382 30 100.0 38 .............................. TTGTGTCTCATTCATTCTATCACTTCCTTATCCAACCA 55314 30 100.0 37 .............................. ACTCTTTCTCTTCTCTTTCTCTCTCTTGCATCATCAC 55247 30 100.0 37 .............................. CACGATAAGAAAAATGACGTAAGCAAATATTGTGCTG 55180 30 100.0 36 .............................. TAATTTCCTCCTTTCTAAATTTTAATCCCTAAATGG 55114 30 100.0 36 .............................. ACAACTTTGAAGAAGCTCCACAGACCACGCAGAACG 55048 30 100.0 35 .............................. CTTAATGAGTTCGTTTTGCTTACGGATGGTTTCCA 54983 30 100.0 36 .............................. AGTGTTTGGCTATCAGCTGTGTTAGTTTGGTATGGT 54917 30 100.0 36 .............................. AAATTTATTGCTGATGCATTTAGTTCTTTAGGAAGT 54851 30 100.0 36 .............................. AAATTTTGAGTGAAATCTTTAGTGAAAGTGATTTGA 54785 30 100.0 36 .............................. TCATCTGCAACATGTTGTGCGCAGTTTCAATGAAAT 54719 30 100.0 39 .............................. TATATATAACTTTGATATTTGTTATTTTTAGACTTTTTG 54650 30 100.0 35 .............................. TCTTTTCCAAATCCACCGTCCCATCCTGTGGCACA 54585 30 100.0 36 .............................. ATTGTATCATAGCTACATTTGTGTAAACACCTAAAG 54519 30 100.0 36 .............................. ATTGTATCATAGCTACATTTGTGTAAACACCTAAAG 54453 30 100.0 35 .............................. CCCACTATCTTATCGTAGTAAGTCACAATAGCCGT 54388 30 100.0 36 .............................. ATGTAACCACTGATTCTAAACGTACTACTTAAAACT 54322 30 100.0 38 .............................. TTTCATAAAACCTCCTATGATTCTTAATAATAGTCTTA 54254 30 100.0 36 .............................. TTTTTTCATTTTTCCATATCTCTGTCCAATATTCCC 54188 30 100.0 36 .............................. ATAGCTCAGGTTTGTATAATACATCACCTGATTCAG 54122 30 100.0 38 .............................. AGATATACAAGCTTATTCTTGCCGTTATAAAATTATTC 54054 30 96.7 35 .............................T ATGAGAGTAACGCTATTAGAATGGTAATAAAGTGG 53989 30 96.7 36 ...........C.................. GGTACAACAGCAAAAAATCCTCTTTATATGGCAAAT 53923 30 96.7 37 ...........C.................. AGGCTATCACAAGCCTTATCACCAGCGCCAATATAAA 53856 30 96.7 38 ...........C.................. TTTGAATTTGACACAAGCAGTAACAGGAAGTGTAAATT 53788 30 96.7 36 ...........C.................. AAATTATTAAAGTTCTTCAAACAAAAGAAGAAATTG 53722 30 96.7 36 ...........C.................. ATGCCTTTAAATTGTAACCTCTCAATCCTTCTACAA 53656 30 96.7 37 ...........C.................. GTAAAAATGGAGATACAATAAATGGAATACTTAATAT 53589 30 96.7 35 ...........C.................. AATTATAGTGGTAGTATACCTAATACTTTTCGTGT 53524 30 96.7 35 ...........C.................. ATAGAATATGTCTGCTTGGTGTATCGCAGGATTTA 53459 30 100.0 38 .............................. TTTGTTCCAGCATTGTAAACTCCACTAGCTGGTGAATA 53391 30 100.0 36 .............................. AAGAAAAGCGAGGCTGTGAGGTTTTTAATGCAGAAT 53325 30 100.0 36 .............................. TTACATTTTCTCTACCAAACTTCTCTGTTATTCTTT 53259 30 96.7 37 A............................. CTGGTAACCTGACTGTTGAATACTTGTCAAAAAGATT 53192 30 86.7 8 ...........C...............GGA TGAAGTGG Deletion [53155] 53154 30 70.0 0 .C....TTA..G..T...T..A.......T | ========== ====== ====== ====== ============================== ======================================= ================== 50 30 98.5 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : TAAATAGGCATCATTTCCAGATGCATCACCAATTAAAATATCACCAATCTCAACTATTTCCTCTATCAATAGCCTCTCACCTCACTTTTATGTTAATTATACCAATTTTATTTTCAAGATACAACCGAATTTTGAACTTGCAATCCTCGTTACTTAGTACACTTTTTAATTTTACATACCATCATTTAATTTTTAAGGTCAAATTTTATGCGAAGTTAATTAGCTTTATATGTCATTTTTTTCATTTTATATTATTTTTGCTTGTGCAAAAATTGACATTTTTAATTATGTACTTTGTGATTTGTGGCGTATTATGACTTTTGTATTTACCAATTGCTGTCGACCTGCAGTACCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : AATATCTTGAAATTTGTTGATTTTCTTTTAGAACGGGTTTATTTGTAGCTCTCTTCTTGGGAACGATAAGTAAAGAATTTTCAAAAATACTAAATTAAGTTACAATTTTGGTAGCTTATATATCCTCCAAAGAAAGATTAAGATGAATTGGGTAAATATGGGATAAGAAGAATAAAATTATTGTCAACTTAGCCTGTTGAAGCAGGGGGTGCCAATGATTTTAACCATTTTGTAAGATGCATTGAGCCCCCTTAATCAATCATTCAAACAGCAGGAAGGACAAGCAGAAAAGGTAAATAATGAAAGAACAAAGTAACAGTTGTTGAAGTTGTATCTAAATATAGGGGAAGAATTTTTATAAAAAAGGTTTATGATAGTGTATCGACTGATTGATGTAACCAAAAAATTTTAAGTCAATTCCAATTTGGTTGATGAAAGCAAGTTTGAGGAGCTAATTCTTGAGCATTACAGAAAGCTTGCATGACGTGCTGTTTTTGAAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 4 71340-71176 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCD01000002.1 Caldicellulosiruptor bescii strain RKCB128 Ga0154049_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 71339 31 96.8 36 G.............................. ACGTAAAAAATAAGGAGTATGTAAGGGGTTTTTTGC 71272 31 100.0 35 ............................... TAATTTTGATATTTTTCATAGTTAACACTTATCAG 71206 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 98.9 36 AGTTTTTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : ATTCGAATTGGAAAAGCGAAGACAAACAGGTGAGTGAAATTCTTTTGCAATTCTCATAACATCATGCATAAGTAAATGCACTTTTTCTCACTCTCCTTAACAGACTGGAAATACAAAAGACATAGTAAATTTTAATATGAGATTTTGATAACTTTAAGGTCAAAAATTATGCGAATTTCATTTATGAACATGGAAAATTAGAATTTTCATTACATTAGTTAAATGATATTGTTTGTAATTCAGTTTATATTTTCTTTTTTGTTATGATGTTATGTTTAATTTTTGTATTTTGTATTTACTTTTTCCTATACTTTTTTACTTTTGTATTTACCAATTGCTGTCGACCTGCAATTTCCCCAAAAACCCCCGGGGATCGACAGCAAAAGGTAATTTCTGGTATGTGTTGATTTTCAAGAGCTTGTGGGGTATAATAGAAACAATCTATAGTTGCTTGAAAACATAACCATTTATTCCTTGCGACGTTTTTCAAAAACCTCCAC # Right flank : AAATTAATATAAATATGAAAATCAAATAAAAGTAAAAAATGGAGGTGTTGACATTATGAAGATTAAATTAAACAAAAAGTCAATAATATCATTGGCAGTGGTGGTGACATTTATTATAGTAACTTTATTAAGTCCTGTATTTTATAATTGTAGCCAAAAGTCAAGCGTTAAGCAGGATATTACCAGCCAGCAACCTACAGATAGTAATACCCAAACAGAAAAATCTACTACTATAACAGATAAATTGTTCAACTGGATGAACATATTTAAAGCATATGCAGATAATACAAACAGTGACAGTGATGGCAATATAGATAATGAGATAGTTAATGATGCACCATATTTAGTTCCAGTATGGCAGCCAGGGGAGATTAACCCAGTAATATACCAGAAGAACGGAAAATTGTATAGGTTAAATGATGTTTCTCCAGAAACTTTAGCTAGGTATTGCAGGATATTGTATGAGTTAGAGGTAAAAGATGTAAAAGAAAAGTATGTTG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 5 2691095-2689821 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCD01000002.1 Caldicellulosiruptor bescii strain RKCB128 Ga0154049_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2691094 29 75.9 38 T.GAC..T.AC.................. GTCATCTTTCATTTCAAACATTGAACGTTTTTTGTGAC 2691027 29 100.0 38 ............................. GTCATCTTTCATTTCAAACATTGAACGTTTTTTGTGAC 2690960 29 100.0 35 ............................. GTCCCAATCTTTTGTTATATTGTAAGTTGGTATAG 2690896 29 100.0 37 ............................. TTTAAAATCATTATGATATGCTAAGGCATAGTAGATG 2690830 29 100.0 38 ............................. GACATCTTTGTTAAAACTGTGGTAGACAGCGTTCGCAA 2690763 29 100.0 37 ............................. TGAGGATTATGCGAGAAAAGTTGCTAAAGCAAGTTTG 2690697 29 100.0 37 ............................. AAAAACATACTATACAATCAATAAGAATTTTTATCAT 2690631 29 100.0 36 ............................. CTTAAAGGGCTTGAAAACTTAACTGTTGCTCAGCAG 2690566 29 100.0 37 ............................. AACATATCTTGCATACGCTTTTTTAGATTCACATCTT 2690500 29 100.0 36 ............................. TTGAAGCTGTACAAAGAGAAATGAAAAGAAGAGCTC 2690435 29 100.0 36 ............................. CTTCACAAGACATGTATCAAAATATTTACAACCTTG 2690370 29 100.0 36 ............................. AATTCAAAAATGGATTATAGCAAAAATCAGCTTCAA 2690305 29 100.0 36 ............................. GGCAAGAAGAATAAGGCAGGCAATACCTGTTTTGAG 2690240 29 100.0 36 ............................. CGGGATTAAGATAGGCGTTCAAGCAAACACAACAGG 2690175 29 100.0 37 ............................. ATGAAAGAGCTGAAAGCAGATTTAATGAGCAAGAAAG 2690109 29 100.0 36 ............................. GGCTCTGGTTTAAATTGAGAAATAAATCCATTGCCT 2690044 29 100.0 36 ............................. GGTGAAATATTTAATAATGTGTTAGGATAAGGAACA 2689979 29 96.6 35 .........A................... AGTTTTTATCAAGAATTTTTTCTTTTGTTATGCTG 2689915 29 100.0 38 ............................. TTGAATCTAACGCAGCAACGCCTCCGCTTTTTTGTATA 2689848 28 72.4 0 ...................C-..TCCTGT | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 97.2 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : TTGTCGGAACACCAGGGGTAGGGAAAACGCATCTAGCCACAGCAATAGGTATAGAGTGTGCAAAACGAAGGTATTCAACATATTTTATACATTTTCAAGAGTTAATAGCCCAGCTAAAGAAAGTATTATTGGAGAACAGATTAGAGTACAGACTTAAGCATTTTTCGAAATACAAAGTTTTAATAATAGATGAGATAGGTTATTTGCCAATAGACAATGATGGAGCAAATTTATTTTTCCAGCTAATATCGAGCAGATATGAGAAGAGCAGTACAATAATAACAACTAATGTTGTATTCTCAGAATGGGGAGAGATATTTGGTGGAGCGACAATAGCAAATGCAATTTTAGATAGGCTACTGCATCATTCTTACGTGATTTTCATAAAAGGTCCTTCATACAGATTGCAGTCAAAAACAGCATATTTTAGCAATACAAACCAGCAAAGTTAAGTTTATTTTTTGTACATTTTTATTTTCGATTTTTTGTTCATTTTGATA # Right flank : AATGAACGAAAATGAGTGAAAATGAAGTGAAATGAGATTTGAAAAAGAAAAGGTACCTCCTGATAAAATATAGTTAAGTAAGTTCTAGAACTTACGAGAAATCATCACAAAAGGAGGTACCTACCTTGAAGTATACACAAAATGAGAAGATATTACAAGTCACAGAGAAAACATTAGTTGTAGGAGTAGATATAGCAAAGGAAAGGCATGTTGGCAGAGCATTTGATTTTAGAGGAGTGGAGCTTGGCAAGAGAATAGAGTTTGAGAATAGAAAAGAAGGTATGGAAAAATTTTTGGATTGGGCAAATAAGATAATGAAAGCAAATGGCAAAGAGAACGTGATGAGACTTGTCAAGAATTTTGTGTTTCCAATTTATAACGCAAATTGTAGAGTTGGGTTATGTTGTTAATGCATTTTCTAATGCTGGGAACTCCATTTTTCCATTTTGTACGGCGTAAGTTCTCTTCTTGTTAAGTAAATATTAATTTCTAAGACTTTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 6 2703489-2694938 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCD01000002.1 Caldicellulosiruptor bescii strain RKCB128 Ga0154049_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2703488 29 100.0 36 ............................. TAAAGAAAGAGGGAAAGTAAATGGCTTTGATAGATT 2703423 29 100.0 36 ............................. CGCATTAAGCCACTGCAAGGTAGAATTTGACCAATT 2703358 29 100.0 36 ............................. TGTATTTGGACTTTAAAATTGTCATTTGCAATATCA 2703293 29 100.0 36 ............................. GTATGATACAAATGGTAATGAGATTAGATTGTATCT 2703228 29 100.0 35 ............................. CAATATCCATATTTGCGAGGTGTAGATGGTGTCGA 2703164 29 100.0 36 ............................. ACACTTAAAAAACTTAATGTAGCATTCATTGGTGGA 2703099 29 100.0 37 ............................. TTTTATTTTCCTTGTTCGTGTATTAAAATCATATTCA 2703033 29 100.0 37 ............................. ATTGAAAGCAAACCACAGATTGTGAATGCTGACCAAT 2702967 29 100.0 36 ............................. TAAAATTTCTATATCGCTAAATATAACAAGCATATA 2702902 29 100.0 37 ............................. ACGCTTCTAACGCAACTGTTTATGACGTTCATAGGTG 2702836 29 100.0 37 ............................. TCAGTTAATCATTTTAAGCGCTTGGAGCCTTTTTGAT 2702770 29 100.0 37 ............................. TTGAGAACTTTTATATTAACTCTATCAACTAACCCAG 2702704 29 100.0 37 ............................. TTAAACCAACTAAGTATGCTAAATCAAAAGGCAGCGA 2702638 29 100.0 35 ............................. ACAATCTTGTTGGAATATTTTCAAACAGAGCAACT 2702574 29 100.0 37 ............................. AAGATGATGTAGCACCATATGTCGCACTTGGCTTTAG 2702508 29 100.0 37 ............................. TGAAAACAAGAAAGATTTTAATATCAAGCCACTGGAC 2702442 29 100.0 36 ............................. TCAACAATTTTATAGCCAAGTGGTGGAATTCCACCA 2702377 29 100.0 36 ............................. CTATGATTATTATAACAAAATGTTCTGTTCCTTAAA 2702312 29 100.0 37 ............................. CGTGTATCCCAAGTTTAACGCACATCTCATTCACCTT 2702246 29 100.0 36 ............................. TTGATAATATATTTGACTTTGCTCATCACTTTACAG 2702181 29 100.0 37 ............................. GCACCAAACAAGCTCAAAATAGGTATTGCCTGCCTTA 2702115 29 100.0 36 ............................. AGTGATTTCTTTATTGAGTTCCTTTTCTATTTCTGC 2702050 29 100.0 37 ............................. ACAAAAATGGTAGAAAACAACAGAAAGTATAAATTGT 2701984 29 100.0 36 ............................. CTTTGCAAAGATAAAAAATGCTGGTTGTGTGGAGGT 2701919 29 100.0 37 ............................. CCTTTCTTTTTTTTTCTAACAGACCAGCCCTACTCGG 2701853 29 100.0 38 ............................. GTTGTCAATGAAAATTGGTGCTGAGAAGTTGTAATATT 2701786 29 100.0 36 ............................. GATTTCTGATGGAAATCAGGATATTAGCCTCTGGTA 2701721 29 100.0 36 ............................. TGTCTGTTTCAAGGCGTCTTATAAGCTTATCTTCTG 2701656 29 100.0 37 ............................. CTTTTTCTGTGCAGCATTGTAAGCCTGCATTACAATT 2701590 29 100.0 37 ............................. GCTAAACCACCAGCTAATAATGTTGCTGTTGCCACAT 2701524 29 100.0 38 ............................. GTGCATGTGCATGAGCCGATTCAGAAGGGTTAATCCCT 2701457 29 100.0 36 ............................. TGAATTTCATGTATCATCAAATAATGTCTCAAATAA 2701392 29 100.0 39 ............................. CTGGAAGCACAAGGGATTATAAAATACGAAATTGATAAT 2701324 29 100.0 37 ............................. ATTCGCATTGATGAGATTAACAGAACAATGATAGCAG 2701258 29 100.0 37 ............................. GTCGAATACTCTAAATCTTCAACTGTATTATAAAACC 2701192 29 100.0 37 ............................. ATTCGCATTGATGAGATTAACAGAACAATGATAGCAG 2701126 29 100.0 37 ............................. GTCGAATACTCTAAATCTTCAACTGTATTATAAAACC 2701060 29 100.0 33 ............................. CAATTATATGCTTGTTATATTTAGCGATATAGA 2700998 29 100.0 37 ............................. GCTTGAACTATAAACTGTTTTGTCGCTGGTGAAAGTG 2700932 29 100.0 35 ............................. AATAATCAGTAGGGCCCATTATTTTTTCGCCAAAA 2700868 29 100.0 37 ............................. CTCTATTTTTTTATTTTTAGAAGGGGGAGTAGTGATG 2700802 29 100.0 37 ............................. CTTGCTAAAACTGTAGTTTTTTTGCTTGTAGGTGACT 2700736 29 100.0 37 ............................. CAGGTAGGATATTTCCCTTTGTATGCTGCAGGTTATA 2700670 29 100.0 36 ............................. TTAATTCAAGCAGTTTTTTAGAATTCTGTTCAAGCG 2700605 29 100.0 36 ............................. TTTATAGAAAGCGCTATCATATCGATTGCGTGCAAA 2700540 29 100.0 36 ............................. GCAGTCTTTGTCAAAAACTTTTATAAACATCTTCAT 2700475 29 100.0 36 ............................. ACGGCAACTGAAGCAAAAGCAAGATATGATGAGTAT 2700410 29 100.0 37 ............................. TTTTACTGTTTGATAATGTGCAAATATTCTGTATATG 2700344 29 100.0 36 ............................. CGGAAAACAAATTTGTACTTCCAATCATTCTGCGGA 2700279 29 100.0 36 ............................. CACAGATATTGTTGAACTTCTGGGAATTCTTTTGCT 2700214 29 100.0 36 ............................. TCAGGTAAATTCGGAATTGTACCCATATCATAATCC 2700149 29 100.0 36 ............................. GAAATATCCCTAAAACCATGTCAGAACTCTTCATTG 2700084 29 100.0 36 ............................. CAAGAATCTTTATCTGCTCTAGTAGGAAGCTTTGCT 2700019 29 100.0 36 ............................. CAAGAATCTTTATCTGCTCTAGTAGGAAGCTTTGCT 2699954 29 100.0 37 ............................. GCTTTATCCGGGCAACTGGGATACTCAAACGATTGAA 2699888 29 100.0 36 ............................. GCGAAAGTTTTGATTGATAAAGAAGGTACTTTATGG 2699823 29 100.0 37 ............................. TGTTTCAATAATATTCGTTCCTGTCGTATCATAGTAA 2699757 29 100.0 36 ............................. TCTATACCTTCTATTGAAATTAACATATTGTGACCT 2699692 29 100.0 38 ............................. TGGTGGGTGGCATAATGATACTATAGTTACTGTTGAAG 2699625 29 100.0 37 ............................. ATTGCAAAGTGTAACGTTAGTTTAAAAATATGTGAAT 2699559 29 100.0 37 ............................. GGAGGTAAGACAGTTCAAGCTAGAAGACATTCAGGTA 2699493 29 100.0 38 ............................. CTTTTTTCTTGCAATCTTCATATGTTGAGCTTTGGTAA 2699426 29 100.0 38 ............................. CTTTTTTCTTGCAATCTTCATATGTTGAGCTTTGGTAA 2699359 29 100.0 36 ............................. TTCGGACCAGTTGCCGAGCTGGAACGACATAGCAGA 2699294 29 100.0 37 ............................. TAAGTTTTCTTGAATTCATTGCTTCACCACCTTTCTT 2699228 29 100.0 36 ............................. AAACAAAGGAGATTCAGCAACAGATTGAAGTAGTAA 2699163 29 100.0 37 ............................. GTGAAAGGCCGAAACAAACGTCAACGAATTGACCCTG 2699097 29 100.0 36 ............................. CACTTTTGCTAAAACACCGTCAATGGTCAGGTAGCC 2699032 29 100.0 36 ............................. GGTTTTCCCCAGAACAACAAACCGACATTCTTTTCT 2698967 29 100.0 36 ............................. AATATGGGAAGAGGTAGGTACAGAGAAAATAATTAA 2698902 29 100.0 37 ............................. AAAGGTTGGGTATTTACTTGGCTTGCCTTTAACGATA 2698836 29 100.0 36 ............................. TGTGCTTATTCGTCGTCAACCTGATGTGCCTTCTAA 2698771 29 100.0 37 ............................. TTCTTGTTCAGTTGCTACTATTCTTACTACATTACCT 2698705 29 100.0 36 ............................. AAAAAGTTTGCAAGTTTAATTTTAATGTCATCAGGT 2698640 29 100.0 36 ............................. AATATGGAATGGTCAGAGGGTATCAAGAGTATATTA 2698575 29 100.0 36 ............................. TTTTTATACTAAAATTTTGCACAGAAATAGGGCAAA 2698510 29 100.0 37 ............................. GAAATACAGCGCAATAATAACTATATCCTCTGCTTTT 2698444 29 100.0 37 ............................. GATTTCTGATGGAAATCAGGATATTAGCCTCTGGCAG 2698378 29 100.0 37 ............................. TTGAACTTGTATTTTAGATAATAAGTGTCTGTTGCAT 2698312 29 100.0 37 ............................. GCAGGATTCATACTTGGCCGACCTCGCTCAGGTAAAA 2698246 29 100.0 36 ............................. AAAGATATAAAAAAATTTAAAGACAAAGCATACTTC 2698181 29 100.0 37 ............................. TGTTCAACCTACTTTCTTTTGTGAGTATATCTCTATT 2698115 29 100.0 36 ............................. CAGAGCCTGCGGGGGAGGTCTGGAGGGGGAAAGCCT 2698050 29 100.0 35 ............................. TCTTGAGTAGGTCCCATTATCTTTTCCCCAAAATC 2697986 29 100.0 36 ............................. ACCAAAAGTAATTCCTCATATTAATGTGTTTCACTT 2697921 29 100.0 37 ............................. CGAAATCATGAACAGGATAAAAATAATTAATATAGCT 2697855 29 100.0 36 ............................. TTTTTCAATTAATTTATCTTGGTCACCTAATTTATC 2697790 29 100.0 37 ............................. GTCATTTACATTGAACTTTTTCAACCAGTCATTGGTG 2697724 29 100.0 36 ............................. AGGAAAGTAGTTTTGTATGTGCTTCCTGCAGATGCA 2697659 29 100.0 36 ............................. GATCTTATACGATTATAATTGAAAAAAAGTATAATA 2697594 29 100.0 37 ............................. GTACTCTAAATATTCAGCTAATGACATTTCTGTATCA 2697528 29 100.0 36 ............................. AAATGCAGCAAAGCAAGCTGACCTTGACGCCCACAT 2697463 29 100.0 37 ............................. TCTTCATGGAATCATATAAAAAAACAATATGTTGCAA 2697397 29 100.0 36 ............................. GAAATCAAGAAAAAGCCAGCTTCTTTAATACAGCAG 2697332 29 100.0 36 ............................. GCCGACCCAGATGGATATGGGCATCTGAATATGGCA 2697267 29 100.0 36 ............................. TCTTTGTCTTTGTCTTGAATCAAAAGTTTTTTGATA 2697202 29 100.0 37 ............................. GCAAAAACGCGAGCGGGTAATGTATTTGATACAGATT 2697136 29 100.0 37 ............................. TACAGACCCAGTTAGTTACTTTAAAAAATTTGGCAAG 2697070 29 100.0 36 ............................. AAGATTAGTTTCTATGTTCTGTTTGTTCAGCTTTCA 2697005 29 96.6 37 .....................T....... CACACTGAAAAAGAAATCAATACATAAAGATATAAAT 2696939 29 100.0 36 ............................. GTTGATGGTGTAACGTCAGTGACAAATTTGCAAGCG 2696874 29 100.0 36 ............................. AAAGTGAAGGCGGTTCAAAAAGTATAACACAATTCA 2696809 29 100.0 37 ............................. ATTGAACGCAGAGGTGAAGGTGATGACTGGTATTATG 2696743 29 100.0 37 ............................. AAGATTCAACTTCTACTAACACAAAATGCTCATAAAA 2696677 29 100.0 36 ............................. ACTACCGCCCGCTGACACTGGAGACTGGGGTGATAA 2696612 29 100.0 37 ............................. TCTAAACCACCCGAACTAATTTGCTCTGAATAGCTAA 2696546 29 100.0 36 ............................. ATATACTGCTAAATAATAAAACCTTACGTACAACAG 2696481 29 100.0 36 ............................. GTTGACGACAAAGGAAATATCAAAGTTGGTACAACT 2696416 29 100.0 38 ............................. GATATTTTTGTTTGTTCTAGTTCATAACTATACCCATC 2696349 29 100.0 36 ............................. TTTGAAAAGGAAGAAGGTGATAAAGGAGAAAAAACA 2696284 29 100.0 37 ............................. AAAAGTTGTTGTTACACAAGAATTAGGCAGACAATAC 2696218 29 100.0 36 ............................. TCGAGTTTGTTGTTGACGACGACGGCACAGGGGAAA 2696153 29 100.0 39 ............................. CTGGTAAGTATTAAAAGGGTAAGTCGTCATCGTTGCTTG 2696085 29 100.0 36 ............................. CAGGATGGTATGGTCGATTTGGAAAAGATTAAAGAC 2696020 29 100.0 37 ............................. TTGTTTTGTTGCTTGTAAAGGCGTTGTAGAAATTCTG 2695954 29 100.0 36 ............................. GCGGTTTTTTTACTATAAACTCTTGAAAAATTTTTA 2695889 29 100.0 38 ............................. TTTTTAGTTGTTCGTTGGTGGTTTTATTTACACACACA 2695822 29 100.0 36 ............................. ACGTTGCCTGATGGGTCATACAAACTAATTGTGACT 2695757 29 100.0 38 ............................. TTCTCTTTGCTACCCCATTGATAGTGCGGGCATTTCTC 2695690 29 100.0 37 ............................. TTCTTTCATTACTTCATCAAGAGAAGAATGCATTGAA 2695624 29 100.0 36 ............................. TATTCTTTCAAGCTCCGCCTGTACGTCCGTTACCCA 2695559 29 100.0 37 ............................. TCAAGTTTTAAAAGCTGAGATTTAACAGAATCATTCA 2695493 29 100.0 37 ............................. ACAATGGTATATACAATATAAATCCGAATGCTTGCAT 2695427 29 100.0 37 ............................. AGGAGTAGGGATGTTATGTTTGGATAAGGGGTGTAGA 2695361 29 100.0 37 ............................. CATAGTACCGTCTGATGCACCAGATTTGCCACATGTT 2695295 29 100.0 38 ............................. AGGAATAATCTGTATTATTTCATTCCAGTCAACAAACG 2695228 29 100.0 37 ............................. TTACATTGTCAAAAGTGGGTAAGCCACCCTTGGTAAG 2695162 29 100.0 35 ............................. GTTAGATTTTTAATTGTTACCCAATCTCCTGCTGA 2695098 29 100.0 37 ............................. GCCTTTCATTACAAGAAGGGAATTTGGTCTATGAATA 2695032 29 100.0 37 ............................. CGTAAAGGTTGCGGTCTTTGATTGCGTGAAGCTCATC 2694966 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 131 29 100.0 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : TATTTGTAATAGTCACATATGATGTCAATGAAAAAAGAGTCAACAAGGTAAGAAAGATTTTGAAAAAATACTTCACATGGGTTCAAAACTCAGTATTCGAAGGTGAAATCACATTGGGCAAGCTTGAAAAATGCAAACGTGAACTTTTATCGGTTATAGAGAAGAATGAAGATTCAGTGTATTTTTATGAGATGGAATATAAACTTGTGTGCAATAAAAAGGTTTTAGGACAAGAAAAGAACTATGATTCTATTATAATTTGAAGATTTTGAAATGAATCCATTGATGAATAAGTATTTCCGAAACTAACCATTTTGCAGCGAGGCTTATAACTATTTTAAAGTTTCTGTCTTCTTTTCCTACAAGGCTTTCAAGACTCTTTACCATCTCCTTACAAAACCCAACCATCCCCTCGCTGCAATTTATTTTTGTTGTGAAAAATTTGTTAATAGGTTATAATATAGATGTAGCATAGAAAAGATGATATTTATTATTAATGG # Right flank : CTTCAACTGCATTTTCAATATAACCTTTTATCACAGTTTTATCTGTTAGCACGAAAATAGATTGCATTCAAAAATGATTTTGAACATAAACAATAGAAGATTCTCAATCATTTAATAAGAAAAAAAGACAATAACAAACTAACCGATGCTAAAAAGGCATCAGCTGGAATTATTATAAATTTAATCAAGATTTAAACTGATTGGGGGCTTATAACTTCTAAACCAAACTTTTTTGCTTCGCTGATAAGTCGATTAAAACGAATTATCTCTTGTTTCTTTCGAACTTCACTAAAAACTTTTTCATCATAGTCAGTGTCATTCTTAAGCATATTATAGATTATAACCAGTAATTTTCTAGCAAGAGCTACTATTGCTTTCTTTGCCCCTCGGCGCTGCTTTACTTTCCAATACCACGTAGCAAGGTATGAATCTCTTACGCGAGTTAGACTCCATGCAACTTCACACAGTATCCTCTTGATGTAGGTATTACCCTTTGTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 7 2905434-2905075 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCD01000002.1 Caldicellulosiruptor bescii strain RKCB128 Ga0154049_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2905433 29 100.0 37 ............................. ATTTCTTTACCGTCTTCAGAAGTGTAAACTACCTCAA 2905367 29 100.0 37 ............................. ATTTCTTTACCGTCTTCAGAAGTGTAAACTACCTCAA 2905301 29 100.0 36 ............................. TTTGCAACCTCTCTTGTCAAAAATACCTGACCGAGA 2905236 29 100.0 37 ............................. TCCCTCTGAACAAAAACATCAATATAAAAACCATCGA 2905170 29 100.0 37 ............................. AGCAGTTGCTAAAAATAGCAAATAAGCGCAATGAAAA 2905104 29 96.6 0 ............................G | G [2905077] ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 37 TTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : GGCAATTTTTTCATTCAATCTAAATTAAACGAAACAAAGGTATATAGTGGTTTAGATTTAACCAGAGAGCAAATAAACACAGGTTTAAAAGATGTTGCTGTTAAATTAAAAGATGCTACAGCGATAAAATTTCCATTTTTAGAATTGGCAAAAAACGATGTAAAACTTCCAGATGGAATAGTACCAGACGCAACAGTAAGTATAGAGAGAATTTTAAAAGAAATAATAGAAGGTAGAGGTAATATAGAGAATAATTTTGTATACAAATTAAACTTAAATTCTTATGTATTTGACTGGCCATGGTTTAAAGTAATAGACAGCGATGGCAGATTAGTAAATGCAACAACAGCAAGAGATCATGAAAAGATGTTATATTATGCACAAGAAGCGTTTAATCCAAATTCTAGATAAAGAATGTTCATGATTTATAGATTTGATAAGAATGGAAATTTAAATTTACTTGATAGTTATGATAAGGTTGCTTCAAATGTTTTATTTAG # Right flank : GTTGGGGTCTGAGTGAAAATTTTTTGACCTTTGAAATTCCTTTAACGGAGCATTATGCTGCTTTTGAATTTTTACTCAAAGGCTAAAATAATTCTTTTAAAAGATTTTGCCAAGTGCAGTTTGGCAGACAAAAAAGACAACAAAAATATTTTTTTGGTTTTATTTTATTTCGTGAGATGATATAATCTTTTTAGAAACTATGTTGTATATTTTTTTATTTTCATGAAATCGCTTTCCTATCTAAAATATTAAAAGTTAAGGTGATTGAGTATGTCGTTAAGAATGCCTTATTTAATTAGCGACGGTATGGTGCTTCAAAGAAACAAACAAATAAATATCTGGGGCTGGGCTGAACCATGCAAGATGGTAACAGTAAATTTCCTGGGAAAGTCATACACGGCAGTAGCTGACCACTTGGGAAAATGGAAAGTTACTTTGCCACCCATGGATGCCGGCGGTCCATACTTTATGGAAATCAAATGCCAACATCATGCTGTTAC # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 8 2912273-2909511 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCD01000002.1 Caldicellulosiruptor bescii strain RKCB128 Ga0154049_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================== ================== 2912272 30 100.0 36 .............................. ACATAAAAAACGTGCGATTTCCTTTTTGCCTGTTTC 2912206 30 100.0 33 .............................. TAGATAAACAGTTTTATTCACAAATGGGGTATG 2912143 30 100.0 34 .............................. TGGTTTGACACGTGTAAGGTTTTCATGGGTGCCG 2912079 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 2912013 30 100.0 36 .............................. AATCAGCTCCTTCTTGAGCATCATACATCACCAAAA 2911947 30 100.0 37 .............................. CTCTTCCTGAAAGCCCAGTTAGCTTGCTCAAGATTTG 2911880 30 100.0 36 .............................. CTCTAAATTGTCCACGCAAAACATCTATTTCCTCGC 2911814 30 100.0 33 .............................. AAATTTATATAAAAATATTTTCTGCACATTTTT 2911751 30 100.0 37 .............................. TCGACCACTACCCAGCGAGAGTTTTTTGGAACAGCCA 2911684 30 100.0 35 .............................. CCGCATGATTGGCAGTGGATAGCAGAGCTTGACGA 2911619 30 100.0 37 .............................. ACAGCTTTTGCCAAATCACGATAAGTAAGTTGTCTTG 2911552 30 100.0 36 .............................. AAACTCTCAGCCTCTTTACACAAGTTATATAGCCTT 2911486 30 100.0 36 .............................. TCATATAAATACCCCCCTATCTTATTTCTTATCTTG 2911420 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 2911354 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 2911288 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 2911222 30 100.0 37 .............................. TGGAGGGAAGAGTGATGGTTTATCAAATCAAAATTGA 2911155 30 100.0 35 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 2911090 30 100.0 78 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGAATTTGTAGCTCTTTTTTTTTTTTTTTTTTTCATAGTTTCCTGA 2910982 30 100.0 35 .............................. ACAAAATTTACAGCTATGCTCAAGAAATGATGAGC 2910917 30 100.0 35 .............................. CCATTAACATGGAGATATGCTTCCTTCTGTGCAAG 2910852 30 100.0 33 .............................. TAGATAAACAGTTTTATTCACAAATGGGGTATG 2910789 30 100.0 34 .............................. TGGTTTGACACGTGTAAGGTTTTCATGGGTGCCG 2910725 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 2910659 30 100.0 36 .............................. AATCAGCTCCTTCTTGAGCATCATACATCACCAAAA 2910593 30 100.0 37 .............................. CTCTTCCTGAAAGCCCAGTTAGCTTGCTCAAGATTTG 2910526 30 100.0 36 .............................. CTCTAAATTGTCCACGCAAAACATCTATTTCCTCGC 2910460 30 100.0 33 .............................. AAATTTATATAAAAATATTTTCTGCACATTTTT 2910397 30 100.0 37 .............................. TCGACCACTACCCAGCGAGAGTTTTTTGGAACAGCCA 2910330 30 100.0 35 .............................. CCGCATGATTGGCAGTGGATAGCAGAGCTTGACGA 2910265 30 100.0 37 .............................. ACAGCTTTTGCCAAATCACGATAAGTAAGTTGTCTTG 2910198 30 100.0 36 .............................. AAACTCTCAGCCTCTTTACACAAGTTATATAGCCTT 2910132 30 100.0 36 .............................. TCATATAAATACCCCCCTATCTTATTTCTTATCTTG 2910066 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 2910000 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 2909934 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 2909868 30 100.0 37 .............................. TGGAGGGAAGAGTGATGGTTTATCAAATCAAAATTGA 2909801 30 100.0 36 .............................. ATTAACGCATCGTCGCTATTCAGTTTGTCCTCTCTT 2909735 30 100.0 36 .............................. ATGTGATAGCAAGGAATATACGATTTAAAAGAGGTG 2909669 30 100.0 35 .............................. TTGTGTTCTGGGTCATATAATCCATATTTTGCAGC 2909604 30 100.0 34 .............................. TTGCTTTCGTTTTCTCGCTCACAGTATTCAATTG 2909540 30 96.7 0 G............................. | ========== ====== ====== ====== ============================== ============================================================================== ================== 42 30 99.9 37 ATTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : CATTGGATTTTTATACATTGAAAATCCTTCTTTTATTCTGTTTATAAACCAATCACCATAAAATGCTGGAATATCTGTTCTTCTGCTTGCACTAATAATCATCTTACTGTAAACTTCCTTCTTTGATATAGGATATTCAAAAAGATTTGAAAAACATTGCTTTTATATTTTTATTTTACCATATATTTGCTCAGGACAGTATAAAATTATTTCATCAAATATTGCTATTTATTTTGATTTTTCTATATTATGTTATTAATGTTTATACATTAATTGCCATATAATGTTTTGTGCTTTGCTAATAAAGAGAATTTTAGATTTTGTATTTACCAATTGCTGTCGACCTGCAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGACAAATTTTGGCATGTATTGACTTGTGGGCTTTTGAGGTGTATAATAGAAATAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTATGAGATTTCTCAAATTATCTACGT # Right flank : CCTCGATGTTTTTTCGTTTTATTTTGATCTAATTCTGTGCAAAATTCGGGTATAATTCGATTGGCTGTTGGTTTTGAGGTTTGGGTTTTGTAAGAAGTTTCCATTTGTAGATGTTTGACTTAAGTAGGAAGTTGTTTAGAGATTGGTTTAAAAATTGAGATACTTTAGAGTGTTTACTTAATTTTACCGGTATTTTGGAAATATAGTGGAAAGGTATGTTTGAAAATTTATAAGAAATTAGTGACAATGGGGTGGAAAATTATGATAAAACTTAATGAGTATGGGAATATTATTTGTTCAAGGGAAAATGGAGAAGTAGTAAGAGAAAAAATATTAAAGGAAATAAAAAATGGTAATATAGTTGTAATTAATTTTGAAGGTGTTGAAATGATTAATCATTCTTTTGCAGATGAAGCATTTGGGAAATTACTTTATGATTTATCAGAAGATGTCCTTAGAAATCAAATAAAATTTGTTAATGCTAATGATGACATAAAAGG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //