Array 1 100551-98238 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJAD01000005.1 Legionella pneumophila strain 2531STDY5467313, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 100550 32 100.0 36 ................................ CTTGATAAATAGTTGGGATCATCTTTGACTTGGCAA 100482 32 100.0 35 ................................ CAATCAAAGTGATTAAATCCGAAAATCAATCCACA 100415 32 100.0 37 ................................ TAGCCGAACAAGCCATGTATGCGTACCCACGTGGAAA 100346 32 100.0 34 ................................ CGCTATCGAGCTATTAAAAATAAACAAAACAGCG 100280 32 100.0 35 ................................ ATTCTCAGTAATTGTTTTTACTCTTGTGTTATTAT 100213 32 100.0 35 ................................ AATTTTCTCAACATTCAGTAAGTGAGGTTTTGCAG 100146 32 100.0 35 ................................ ATGCCTAACAGTAGCTAGCATATACGCAGCATGGC 100079 32 100.0 35 ................................ CTGTTATTGGTTGCATTGTTTTGTAGTGAGATTCG 100012 32 100.0 35 ................................ TGTTGGTATAGAAGAACCATCCCATAATTGATTAA 99945 32 100.0 35 ................................ TTATTTAAAATTTGGCGTAGACTGGTAGGTCAATG 99878 32 100.0 33 ................................ ACTACTAATATAGAAGTTATAGACTTAGATAAA 99813 32 100.0 36 ................................ ATTTTTATCGCGCACTATCCAAATTAAGTCTGCGAT 99745 32 100.0 36 ................................ CCCCGATCCTATTGTCGGTAAACCCGACGCACTAGT 99677 32 100.0 36 ................................ CGATAAAGCCCGCATGGAATCATTAAAACCCTTCGC 99609 32 100.0 35 ................................ ACACCATAGGGTGGGTCTGTAATCATTGTGTTCGG 99542 32 100.0 36 ................................ TAAGGAGAATATAATGCAAACTTTACATATACCAAC 99474 32 100.0 35 ................................ GTACCACTACTTCTAACGGCTTTTACCATCATAGC 99407 32 100.0 35 ................................ AATGTTATGTGCCAACAAAAATCGATGTATCAAAT 99340 32 100.0 35 ................................ TTCGGTATATTCATTCTCATTTTGTTTTTTTGGTT 99273 32 100.0 35 ................................ CCTGCGTCCGGCGACAATTTAGGCGCAGGAGTAGA 99206 32 100.0 35 ................................ TACGATTGTTTTACCGCGAGGATAAGCGTACAAAG 99139 32 100.0 35 ................................ TGCTCAAGAGATGGGGAACCATCTCACCCTGCAAT 99072 32 100.0 35 ................................ AATGATGAATTAGTTAATGAGATCAAAGAAGAAAC 99005 32 100.0 33 ................................ AAATTCGACTGCTAAGTTATAACTGTCGGTATA 98940 32 100.0 35 ................................ CAGAAAAGTTAAAACAGAATATATCTTAGAACGTT 98873 32 100.0 35 ................................ AAGAATTTTACTAGCATAATGAAGAGGGGATAATC 98806 32 100.0 37 ................................ ATGTCTAATCCTCATAATTTGGAATGGGTATGAAATG 98737 32 100.0 35 ................................ AAAACAATAGAATAATTCATTTTATTGTTCCTCAA 98670 32 100.0 35 ................................ ATCTCGCCTTGGAATTTGGTGCACACTAACTTCTA 98603 32 100.0 35 ................................ TGCCAAAAACGCTACTAGACGGCCTGCCGGCGGTT 98536 32 100.0 35 ................................ TTAAATCCACTATCACTAAAACAGATTAATTATTA 98469 32 100.0 34 ................................ CAAACCTCATTGGTATTTCAAGCAGCGGTTTCTT 98403 32 100.0 35 ................................ GACCTTGACTTGCTTGGTTTTGACGAAAACGAAAT 98336 32 100.0 35 ................................ AGGAATAGCAATTGTGTCAAATAGAAAAGTAGACG 98269 32 90.6 0 ...................T.C........T. | ========== ====== ====== ====== ================================ ===================================== ================== 35 32 99.7 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AATTTTATACTCCTTATTTAGTGAAGTAATTATGTTTGTAGTAATAACTTATGATGTTAATGTAACAACTTCTGGTGGGCAGAAACGTTTACGGAATATTGCAAAAACATGTCTTGATTATGGTTTTAGAGTGCAAAACTCTGTATTTGAATGCGAAGTTGAACCTGATCGGTTCGTTGCGTTAAAAAATACACTTTTAGAGTTATTTGATCCTGATGCTGATAGCTTACGATTTTATTTTTTAGGCAAAAAAGGGAAGGATAAAATCGAACATTTTGGAGCTAATAAGGTCATCGACCCCTTGAGAGATCCACTGATACTGTAATTCGCTAACTTGAAGTTCTCATATTTTTACCGGTCAATTATCGGATTATAACCACTTGATATTTATATTTTTTTTTATGTGTGCTTATCAAGCTAATCAATAAATATAATTTTTTATTATTATTAGCGATATTTAGCATTTTTTTCGATATATTTCAATATGCTATAATCATACT # Right flank : ACGGGTAGCATGAGTTTTTTAAGTGAACAAAAGCGTCGCGTTTAGCAAAGATAGTATGAATAAATTTTAATTAAAATGAACTTGATGTGAATTGTTACAAACATTTCATATCGATTTTAGGTATATTTAGCCAGAAGCTCTTTGTCTTTATCTTTGACTTTGATATCTTAAAGAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCTAAGACTATCCTGAGATTTTCCTGGCATTTTATAAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTCATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGGATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGTGTGATTCTGGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10651-13558 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJAD01000016.1 Legionella pneumophila strain 2531STDY5467313, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10651 28 100.0 32 ............................ TCTTTCTTTGCTGCTAGTGCGTCAATAGATTT 10711 28 100.0 32 ............................ AAGGAATGATGAGAATTAGTGTTGCTGAGTGG 10771 28 100.0 32 ............................ ATAGAGACAAGAAACTTCAATCATTGCTTTAT 10831 28 100.0 32 ............................ AGAAGAATTAAAAAACGCTCTTATGCAATGTG 10891 28 100.0 32 ............................ TATCAGACTTAAACGAATCTCACTATAAAACA 10951 28 100.0 32 ............................ GGCGTATAATTATCTCGTATGTATTGCTCTAA 11011 28 100.0 32 ............................ AAAATTGTTTTTCTGCTCAAGAGATGGGGAAC 11071 28 100.0 32 ............................ TATGATGACGGCCTCCACGGAGAACTTGTTAT 11131 28 100.0 32 ............................ ATCACGAATGCACCCAAATTGCCTGTTAGTTA 11191 28 100.0 32 ............................ ATGTAGCGAAGGCGAGGTTCCATAATGTATAA 11251 28 100.0 32 ............................ CACTCGATGGGGTTTTCGGAGAATCATTCAGC 11311 28 100.0 32 ............................ ATTACCATTTTTTTAATCTGCTCAGATAATGG 11371 28 100.0 32 ............................ TTCCAGCTCTAATATTTTACACGCATCATATT 11431 28 100.0 32 ............................ CTGCGGGCTTGGAAATGATGAAGGCTGTTAAT 11491 28 100.0 32 ............................ TGTCTGCCGTGTCGCCGCCGCCAGAACCTAAC 11551 28 100.0 32 ............................ AATTGAACAGATAGTTGAAGAATCAGTAAAAG 11611 28 100.0 32 ............................ TTCTTAGTCCCTTTACACGCTGGGCATCTAAT 11671 28 100.0 32 ............................ TTGAGAGTTGCTCTTATGGCCTCTTTTGTAGA 11731 28 100.0 32 ............................ TAATTCATGAACGATAGGGTAGGTACTAGCAT 11791 28 100.0 32 ............................ TCATTTTGAACTGTAAATAAACCTTTCGTTAA 11851 28 100.0 32 ............................ ACTGTGGTGAGTATGGTGAGAAGTACGGAAGA 11911 28 100.0 32 ............................ ATGTGCACCTACACCGTGAATGTGCCGGTATT 11971 28 100.0 32 ............................ TCTGAGCTTGAGCAGCTTGAAAAACAAATACA 12031 28 100.0 32 ............................ AAAACGTGCTCCACCATTTAGTTGACGGGTCA 12091 28 100.0 32 ............................ GCTTGTGCCATGCGCTTAACTATTGCCCTTTC 12151 28 100.0 32 ............................ GATATGTGAAGAAGCAAAGCAAGTAATTGCTA 12211 28 100.0 32 ............................ TACTAGCCCTTAGCTATGACGAGCTCGACCAG 12271 28 100.0 32 ............................ GATTGAGATTTCAGTCGAATATATTTTACCTG 12331 28 100.0 32 ............................ TGCCCTGAACTTAGATTAATAATTACTCCATG 12391 28 100.0 32 ............................ GCTTGCACTTAGTAGGTAACGCTATCGTCAAT 12451 28 100.0 32 ............................ TATAAAATTTAATTCAGCGTCATATACCGGCG 12511 28 100.0 32 ............................ TCAGCAGCAAGACCCGGGGTCTGCAACTCAAG 12571 28 100.0 32 ............................ AAAGCCGCCGACATACGCCCTAAACTTGGTGT 12631 28 100.0 32 ............................ TATCTATTTAGATATAGCCTTCTTTCTGTAGA 12691 28 100.0 32 ............................ AGCAGTTCCAGCAGCATTTGATGGCTTATAAG 12751 28 100.0 32 ............................ ACAAGAGGCGCAACTAAACCTAACACAAATGT 12811 28 100.0 32 ............................ GGAATTTGTCGGCCGCATAGACCGCTTTTATC 12871 28 96.4 32 ...............A............ TTAACAGTTAATCTTTCAACATCAGATAAACT 12931 28 100.0 32 ............................ TTACCTCATGACTTGCTTTCTAACCTTTGCGC 12991 28 100.0 32 ............................ TGTCCGCCGTGTCACCGCCTCCGGAACCTAAC 13051 28 100.0 32 ............................ CAATTCGAACAAAACATAATCCTCAGGATTCT 13111 28 100.0 32 ............................ TGCTGGATTGTGCCCCAAAGCAAACAGAGACA 13171 28 100.0 32 ............................ AATACGTGGTTATGACCTCATCTAAAGACGTA 13231 28 100.0 32 ............................ ACATGAAGATAAAAAAACGGGCAAAAAGACCT 13291 28 100.0 32 ............................ AAATGCCGACAACGGCGCTTAAAAGGTCTTCT 13351 28 100.0 32 ............................ AGTGAAGCTATTTTTAACTGGGATAACATGAT 13411 28 100.0 32 ............................ TTTTGCCGCTCTTTGAGAGATATTGCTGTTAA 13471 28 100.0 32 ............................ GCGATATTTTTAATCAAGAATTCGAAACATAT 13531 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 49 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACTCCTTGACAGAAGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAACGGGCAAAGGCACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAATTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAGAACAAGGTAAATTCCTTGAGTTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTATAACTATTTTTTTAAGATTTAGAGCAGA # Right flank : GTTATTATGTTAAAGGTGTTAGCACGCTACGCAGCAAGGTCGGACCAAGGCCTGACCTTGTTTTGATTAGGAAAGTCTAATCATGACTATAATCTCCATTTCTCTTTATGGAGTACAGCAACCGTTAGTCAAATCTATAAATAACCTAAACAAATAAAAATAAACTCTCTAGTTCCATGGAAATGAGTGTAATTGGATCGAAGTCAAAATAAATTGTGAAGTCTGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGAATCATGAGAATAATCTAATGGTGTACGTTAATTATACACGTATGCTAAAAATTACTACCTGATGAGCTAGGATATTCTCTACCGCGTTGTTTGAATCACACTGAGTCAATCGTAAATTTATTTAGCATTACTGAGAATTATTTAATCCTCAAAAACTCAATAATAAATTTAGATATTTCACAAAATCATACGGTGAATGCTCTCCTGGTTTCGTCAGTTACTGAAATAGTGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //