Array 1 3998947-3998733 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029488.1 Salinisphaera sp. LB1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3998946 29 89.7 33 T.CA......................... GAAACCGATATGAGCGACGAAATTCTAACCGGC 3998884 29 100.0 33 ............................. CGGAATCGTAATCGGCGCATTGGCAAACCCTGC 3998822 29 100.0 32 ............................. ACCATGCCGAGGAAGACGCCGTGCGCAGCTGG 3998761 29 89.7 0 ..................CT........A | ========== ====== ====== ====== ============================= ================================= ================== 4 29 94.8 33 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : TCGCCTATCTAGGTTGCGGTCTCGACGACATTACTCTGGAACTCGAGGCAAATACCCGAGTGTTGTTGCTGGGCGGCGAACCGCTCGACGAAGACATCTTCATCTGGTGGAACTTCGTCGGTCACAGCAAGGCCGAGATCAGTGAGGCACAGCATCAATGGGAGAACGGTAGCGATCGATTCGGATCCGTGACAGGGTTCGACGGCGAACGTCTGATGCCGCCTCGGATCCCATGGCGGACTTGAATCTGTCCGAATCTGACGAGTTCCTCTGCGGGCTATCACGTGGGTCAATTTAGCTTGCCGCGAATGTCGGCTTTGGGTCGTATACCGCTGTAGTCGAGTGGCGCCAAGTGTGCCGGAGGTATCCACGGATTGCCCGGTAACTATATGATTAAAAGGCGCAAATTACTGGACAGACTTTAGACGACTTGTCCTCTTTTTGAAGTCAATAAAAACAACTGCTTATAATCTGCAAATCGACAGACTTTATTGTTGGCT # Right flank : ACCGTGCGTACGGCGGCGCGCGTGTTGAAAGGTAGTTTGGGGCTCGTGGATTAGCGCATTGCGTTCTCTGCGCTTACGCCAGATGCTGCCCCGAGAAACCCACCGGACTGCATGGCCCACAGGCGCGCGTACAGGCCGTTGTGCGCGATCAGTTGGTCGTGGGTGCCGGTTTCGACGATGGCGCCGCGGTCGATGACGACCAGGCGGTCGAGTTCGGCGATGGTGGATAGCCGATGGGCGACGGCGATCACGGTCTTGCCTTGCATGATGGTGTGCAGGTTTTCGGTGATGGCGGCTTCGATTTCGGAATCGAGCGCGGCGGTGGCTTCGTCGAGCAGCAGGATGGGGGCGTTCTTGAGCATGACGCGGGCGAGTGCGACGCGCTGGCGCTGGCCGCCGGAGAGTTTTACGCCGCGTTCGCCGACGTGGGCGTCGAGCCCGCGGCGGCCCTTGTTGTCGGTCAGGTCGTAGACGAACCCGGCATGGGCCGCGTCGATCGC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4004218-4003091 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029488.1 Salinisphaera sp. LB1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4004217 29 96.6 32 G............................ TCGGTTTTGCGGATGTTGATGTTGGCGCCGTT 4004156 29 96.6 32 G............................ GACACCATGCCTACGGCGATCGGTATAGCGGC 4004095 29 96.6 32 G............................ CATTCGGCCGGGTGGTCTGGACCCGGAACCAG 4004034 29 96.6 32 G............................ ATATCCACGTCGGCCGCATACAAGCCGCGCTC 4003973 29 93.1 32 G.....................C...... GCCACGGACCGCACGCACGGCATCGTCATGAG 4003912 29 96.6 32 G............................ CAACCGATATTAGCAATCTTCAGACATCACTA 4003851 29 96.6 32 G............................ GCAACACGACCCCACCGACCGCGCCGCTATCG 4003790 29 100.0 32 ............................. AATCCATGATGGACGTGGCCGAAGGCTTCATT 4003729 29 100.0 32 ............................. AGGCGATCCAGGCGGATATCGACACGGTGTAT 4003668 29 100.0 32 ............................. CGTGGTGTAATCCGCGCCGGTAGTCGTAGTGG 4003607 29 100.0 32 ............................. CTGGAACGCAACAGCTACAACGAGTTTCTGCG 4003546 29 100.0 32 ............................. CCACAAACAGCGGCACTACCGGCGCCACCGAG 4003485 29 100.0 32 ............................. TCGCCGCGAAGAACGTCAGCCACATCAGGGGA 4003424 29 100.0 32 ............................. GTAACGTCGATTCCAATGGCTATGGCGCCGTA 4003363 29 100.0 32 ............................. TTGTATTGCAACGTGGCGGGTTCGCGTGTGAC 4003302 29 100.0 32 ............................. ATTTTCCGATGTTGTGGAAAGTGTGGCGGTCA 4003241 29 100.0 32 ............................. TTAGAAACCTGCGACAAATCTTGAGTCACAAG 4003180 29 100.0 32 ............................. CAGCCGAAGCCGCACCAGAACGAGAACGAACA 4003119 29 96.6 0 .G........................... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.4 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : TCTGGCCGCTCGTGCCGGGCCTTGCCCTGGCCGGCGTGCTGATCCTGCCGTTCGCTCTGAAAGAGCCGCGCCCCATCCGTGTCGATACCGCCGCTCTCGCACTCCTGCTTACGGCCGGCGTGTTCGGCGGCGCGGCCGATCTATTGTTTTTGACCGCCACCGGGCGTGGCCCATTGTCGATCGTCGCTGTGCTGACAGCGCTCTATCCGGCCGTCACCATCCTTCTCGCCCGCATTTTCCTCGGCGAACGATGGAACGCGGCGCAGGCCTGCGGGCTCCTGGCCGCCGCCGTGGCGATTACGCTGATCACGCTGGGTTGATTGCCGCCCCGGCGGACATTTTACGAGCGAGACGCAACCGGAGAGGCTACCCTCGGTAAGGTCGTCGAACGACAAATACGACCACAGATGGCGCTCTTTAACAGCACTGAAATACCGGCGTTCAGGTTGGTACTTTTGGTCTGTCTTTAAAATCCCTGTTAAAACAGCGATGTATTTTTA # Right flank : AGGCTCGGCGCGCTTGTGTATGTGATCGTTACCCGTTCCCTGAAAACCAACAATAAAGACCATCGCAATGTCGTCTCTAAAGATATGATTTTTAAAAGGGGGCGAAAATGTCGACAAATTTTTGGTAGTCCGTTGCGAAAATTTTTCTGCACGGACCCTGCAATGATGGCTTGGCTACCACCTGCGTAAGTAGTCGCACAGTGACCCGGCCGAGACGTGGCAGTGCAGTCGCCCGGCGATAAGCGAGATCAAAGTCCATTTTCGCGATGGGTCTCGGTAAGACAGTCCTGATCCGCGAAGCGCTCCGCCAGGAAGTCGATCAACGCGCGCACGGCGGGTAGCAGACCGCGTCGAGAGGGGAAAACCGCCTGAACGACGCCGCCGCGCGGTGCCCAGCCTGGGAGTGCATCGACGAGTGTGCCCTCGGTAATATGTCGTCCGCCGACCAGCAACGGCAGTTGAACGATGCCGAGGCCGGCGAGCGCAGTGCGGTGCAACGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //