Array 1 538393-545483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYI010000002.1 Bifidobacterium bifidum strain 1001283B150225_161107_H11 NODE_2_length_565248_cov_82.8376, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 538393 33 100.0 32 ................................. CGCGACGATGCCGCACGTGATGCGTGGTTCGA 538458 33 100.0 34 ................................. AACGATATGGCGTATATAAGCGCAACGCCCAATA 538525 33 100.0 33 ................................. GTAGATGTTTGGGTTGTTGCGGCATATGCAATA 538591 33 100.0 35 ................................. ACCTTATCCATGTAGTTGCCGTTGGCCACGGTCTC 538659 33 100.0 34 ................................. AGATGGCTTAATCTGCCCAAAACGTGCAACGCGT 538726 33 100.0 33 ................................. GCATACCTCTACGACGTACGCACCAAAACACTG 538792 33 100.0 35 ................................. ATACCCTTGACCATGCAGCAGCGTAAAAAGAAAAG 538860 33 100.0 35 ................................. CCCGCGACTCAGCTCGCAACCGGTCAGGATTACGC 538928 33 100.0 34 ................................. AGTCCACTGTGGACTGTCGGCATAAACAACTATT 538995 33 100.0 36 ................................. AACAACAGCGTCAACATACCCATACCGCTACACGGC 539064 33 100.0 36 ................................. ATAAATGTTCGGGTTGTTTCGGCATATGCAATATAC 539133 33 100.0 36 ................................. GACTACGTGCGAGACGATGACTACGCCGAACAAAAG 539202 33 100.0 34 ................................. ACCCACGCCCTCGGCAAGATCGTCATGAGGGCCG 539269 33 100.0 35 ................................. CCCGCGACGCAGCTTGCGAGCGGCCAGGATTACGC 539337 33 100.0 33 ................................. GACCGTCAAGGGGCAATTTAACGGCATATACGG 539403 33 100.0 35 ................................. CGCGAAACCGTGCCCCGCATGCATGACATCGACGA 539471 33 100.0 34 ................................. GAGGTTGAGGACTGCGGCGGCACCACGCGTTACG 539538 33 100.0 33 ................................. GCTACCATACGCTATAAGATCGTCGATATATGC 539604 33 100.0 35 ................................. CGTACCATTGCATCATGCCCATGGTGATGGCGTCA 539672 33 100.0 34 ................................. AGCGAGTTTGCCGTAATGGCATTATTCGCGGTGC 539739 33 100.0 34 ................................. CGTGGCGCAGATGATCGAAAACGGGGCGACCGTC 539806 33 100.0 32 ................................. TGGACAAAGTCCGCACCAAGGGCACCGATGAC 539871 33 100.0 34 ................................. TATGAGATGAACAGACGAGATCAATACCCGATTT 539938 33 100.0 35 ................................. TACAAGGTGCATCTTGATACGGTGCCGAGCGATGA 540006 33 100.0 32 ................................. CAGTTCGACGCCTCGTTGAACGGGAGTTCGAT 540071 33 100.0 35 ................................. TCCGATGCGTCTCGATATGAGCAGATCGGTTGCCA 540139 33 100.0 34 ................................. GTGGCGAGCGTCGTACTAAGGTTGCTGATATGGG 540206 33 100.0 34 ................................. TTGCGGTGTCATCGGTGAATTTCACAACGTCGTG 540273 33 100.0 37 ................................. GATAACGCAAGCAACTAGCGTGACAACTCGTGCGAAT 540343 33 100.0 34 ................................. TTGTGTATCATTGTTGGTGCTTGCACCGTCCGCT 540410 33 100.0 34 ................................. ATTGATTTGTTGCGTGAATGTATTATTAGGATTA 540477 33 100.0 35 ................................. AGCACGTTTGCTTTCATGGAATCGGTGAAGCCCGG 540545 33 100.0 34 ................................. GCTATGGCGTGGTTTATCGCTACGACATTTAGAA 540612 33 100.0 34 ................................. TTGATATTCGATGCTGCACTACCATAATCCACGT 540679 33 100.0 35 ................................. GATAAGATTATCAATGTACGCCAACGCTTCGGACG 540747 33 100.0 34 ................................. GTATATGTTCGGGTTGTTGCGGCATATGCAATAT 540814 33 100.0 35 ................................. CGCATCACGGTCTTTGGGCGGGCGAGGATGAAACC 540882 33 100.0 32 ................................. GGCAGGCCGTGCGACTGCGCACCGGAAGGGAC 540947 33 100.0 34 ................................. GCCTGACGGTCGGGGGCGTCACCACTGTGGCTCC 541014 33 100.0 34 ................................. TCCAGCCGGTGACCGCGCTCGGCTGGATTCTCGG 541081 33 100.0 35 ................................. GGGCTTGAGCCCGTGCCACGCTACCAGTTGACCGC 541149 33 100.0 33 ................................. GCGATACAGCGAGCACCAGAGGAATAGGATATA 541215 33 100.0 33 ................................. TGCTCGTAATGACGAATCAGCGCAAGCATGATA 541281 33 100.0 35 ................................. ACTGATGCCGTCGCGCAAATGGTTGAAAACGGTGC 541349 33 100.0 35 ................................. CGTGTGGTTTTACGAGATGAATCGTCGTGACCAGT 541417 33 100.0 34 ................................. CTGTACGGTGCTGCCCCAGTAGAGATTCTCCTTC 541484 33 100.0 34 ................................. AATATTTTCAAAATGGAAATGCATGTAGCATCCA 541551 33 100.0 34 ................................. ATATATGAAAGGAAAATAATGGATGACGAAACTA 541618 33 100.0 35 ................................. CAGTCGATCGCGTTGAAGCGATTAAGTGCGTTATT 541686 33 100.0 34 ................................. CGACTTCAACGTGTATTATCGACCGAAGAAATGG 541753 33 100.0 35 ................................. AACGCAATCAAGTGGGACACCGATCAAAAAGCGCA 541821 33 100.0 33 ................................. ATTTACGACGAGGCCTCGGATTCGTGGGGCATC 541887 33 100.0 35 ................................. GCCCCGCCATCCGACGTCTCACCGACCGCTACCCG 541955 33 100.0 36 ................................. TGACGCAGCTGCGCTATCTGGTCGAACACGGGGCTG 542024 33 100.0 35 ................................. TCGCGAACCTCGGCTCCTACATCTCGCAGGTGCCC 542092 33 100.0 35 ................................. GGACACGTCCATAGCGGACGCCATTGCCAAAGCTG 542160 33 100.0 35 ................................. CATGGCCGTGGTGCAAAACATCATCGGCGTATTGC 542228 33 100.0 33 ................................. TGGACTCCTGCCATCGCTGACCATCAACCCCGA 542294 33 100.0 34 ................................. ACCACGCCTGACGGGCTGGCGCACGAGTACGAGA 542361 33 100.0 35 ................................. AGATCACCGGGGAGTATGGCGCTTCCCACGGTCAG 542429 33 100.0 34 ................................. GGCAACGGTTGCACGGGGATGGATAAGAGCATTC 542496 33 100.0 35 ................................. AACCTCGATCTATACGATACCGGCGACCCCGCCGC 542564 33 100.0 32 ................................. GCTTATGTATGCCATATCGTTGAAGTGCCCGG 542629 33 100.0 34 ................................. TGCATTCGGGTCATATACTTGGGCAAGCGGCATT 542696 33 100.0 33 ................................. ATCTGGACTATAGCTATCGCGGGCACGAATACA 542762 33 100.0 36 ................................. CGTCAAGGCGGCGGAGCTCAAGGCGGCGGAGCTCAA 542831 33 100.0 32 ................................. CACCAGTTCGCGCCGCCCCTGATCGTGCCCGT 542896 33 100.0 33 ................................. TCCGGCAACTGGGGGCAGGCTTGGGAGGGTATC 542962 33 100.0 35 ................................. ACCACTGCGGAAGGACACGTTGGGGTCGAGTGTCA 543030 33 100.0 34 ................................. GGTTTGCGTGGTGGTTAAGTCGGGTGATACGTTG 543097 33 100.0 34 ................................. GATTTCGGGCGCAACCTCGCCGGGCTCACACGCA 543164 33 100.0 34 ................................. GCCCGGGTAGATCAGCGACGGGTTGCCCGACCGG 543231 33 100.0 34 ................................. ACCATTGGCTTGCCGCTGTTGGCCAAAAACGTTA 543298 33 100.0 35 ................................. GACATGCCCGCCGAGGTGGCCGATGTCGCCAAACT 543366 33 100.0 35 ................................. TGCAATCATATTACGGTAGCACCGTTAAAGGGCAA 543434 33 100.0 35 ................................. GCTGCCACCACCACACCAACCACAAACGGCAACCG 543502 33 100.0 34 ................................. GCGCTCGATGTCAACACATTTGTTGACGATCAAG 543569 33 100.0 35 ................................. TCCGGCAACTGGGGTCAGGCTTGGGAGGGTATCAA 543637 33 100.0 34 ................................. GCTCCGGTCACGTGGACTGCTGACGGGGCTCCCG 543704 33 100.0 34 ................................. ACAAAAGCCGTGAAGCTGCGCACCGGAAGGGACT 543771 33 100.0 34 ................................. TTAAAGGGCGCGTTCTGCGCCATCACGGTGAGTC 543838 33 100.0 35 ................................. CCAGAAAACCCCGTTTATTCTGGAAGTGCCCGCCG 543906 33 100.0 34 ................................. ATCGTAGGTGGTGTATATGCCCAGAGCCCGCAAG 543973 33 100.0 34 ................................. GAGATGACGTGCAATCAGGAATTTCCGAAGGATT 544040 33 100.0 34 ................................. TTCCATTGCGCGAATGCGGTTTTCCACGTTGGTT 544107 33 100.0 34 ................................. CAGTCAAGGTGACCATTTTCCTTCTGGCTGAGGG 544174 33 100.0 36 ................................. ATCGGGTCGAACAGATATCGCATGGTGTTCGCGACA 544243 33 100.0 34 ................................. AAAAACGCTACATATCTGGTTTATTGTTGTGAAT 544310 33 100.0 34 ................................. ACTCTGGACGCGGCTAGCAGCGCGACGAACCACA 544377 33 100.0 33 ................................. TCCCCACGGTCGCCCTTGTCGCCCTTGGGGATG 544443 33 100.0 35 ................................. CGTAGTGGCGAAAAAGGCGCGTTGATCTTCGGCGA 544511 33 100.0 32 ................................. ACTGTATGGGCGGGTAGGGTTCGCCGGTTTGC 544576 33 100.0 34 ................................. AACGCGGGCGTGGCGCAGAACGCATTATCTAATG 544643 33 100.0 34 ................................. ACCAAAAAACTCCGTTTATTTTGGAGGTGCCCGC 544710 33 100.0 35 ................................. TGCAATCATATTACGGCAGCACCGTTAAAGGGCAA 544778 33 100.0 34 ................................. TTACAGGATTGCATGTGGCGGTACGATTTACGAA 544845 33 100.0 33 ................................. GCGAGTTGATCGTACTCGTTTTTAAGATACCTG 544911 33 100.0 34 ................................. GCCAAGAATCCTCTCCATGCTATCCACTGTATCA 544978 33 100.0 34 ................................. TCCTTTCTAATTACTAGTCCTTATACAGATCGTC 545045 33 100.0 34 ................................. CATTCGGCTGCGCTCATGCCGGTTATGGTCACGC 545112 33 100.0 35 ................................. GACTGCCAGCGGTAGCAGTATTTGACCATGTTGCC 545180 33 100.0 36 ................................. CATCACTTTAAATGATGGAACCCCCGGAAACCCGAA 545249 33 100.0 33 ................................. CTCCCCAATCGGGTGACGCTGGCTCCGTCCCGC 545315 33 100.0 35 ................................. ATCCCGTAGAACACCGCGAGTATCACTATCGGAAC 545383 33 97.0 35 ........G........................ TGGTCTCCAATCGTGATCTCCACGTCGTCGAAAGA 545451 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 106 33 100.0 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : AATACGGTCAACGCGTGCAGAACAGCGTTTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATCTGGCGAAGATTATGGATGAGTCGCAAGACAGCCTGCGGTACTACAATCTTGGGGCGAAGTATTCTTCGAAGATTGAATATCGGGGAAGGCAGCGACATTTACCGGTCGATGGCGTGATGATGCTTTGACGCCGCATTGGCATGCGGCATTCGGCGGACTGGAGCGGTGTACGACGTGCGGAGATCGGCCGGTGCGAGCCTTGAGCTCTCATGAAGCACTGGGTCGTTCGCACCACGGTTCATGGCTTCTGAGGACGGTGTGTGTTCTTCTTGTCGTTTGATAACTCAAGAGTGAGTGATCTGCTGGCATATCGATTCAGCGGATTCGCATATCGGGGAAAATGCGGGTGAATCGTACGGTACAATTGATGCCGTGGAATGGGTGGAGTATCCATATTTTGAGATATGAAGTCCATTCTTGCG # Right flank : TGAAGCGCTGCTGAAGGAAGTCAAGGCTGTGATCGACAATCCGGACGCCACCGCGAAGGACGTCGCGCAGATGCTCAAGCGGATGACGGACTTCGAGTACGAGTATGCGACTCCTGATCCCGATCCTGACCCGGCCCCGGGTCCCGATCCCGACCCGGACCCGGACCCCGACACTCCCGGTACGGATGGCCCGTCCAAGCCCGGAACCGGCGACACGGATACGGACAAGCCCGGCAACAAGCCCGGTGACGGAGCGGAAGACAGTGGCAAGACCAACGACAAACCCAAGCCTCCGCTGTCGGCGACCGGCGTGAACGTGACCGCGATATCGGTCGCGGTCATGGCGCTCGCCAGCGCTGCGACGGTGCTGCTGACCATCAAGCGCCGTAGGGGCTGAACATGACCGGTGCCGGAGAGTCCAATGCTCTCCGGCACCGTCATATGTCGAACTCCTGCATAGGGTACCTTAAATCAGCCTGATCTGATAGACTGTCTGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //