Array 1 58130-56958 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYL01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R2107 NODE_1_length_442494_cov_80.958607, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 58129 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 58068 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 58006 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 57945 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 57884 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 57823 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 57762 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 57701 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 57639 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 57536 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 57475 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 57414 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 57353 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 57292 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 57231 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 57170 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 57109 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 57048 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 56987 29 96.6 0 A............................ | A [56960] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75571-74262 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYL01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R2107 NODE_1_length_442494_cov_80.958607, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75570 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 75509 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 75448 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 75387 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 75326 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 75265 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 75204 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 75143 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 75082 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 75021 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 74960 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 74899 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 74838 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 74777 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 74716 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 74655 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 74594 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 74533 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 74472 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 74411 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 74350 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 74289 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //