Array 1 455450-456942 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWZ01000002.1 Salmonella enterica isolate STY32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455450 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455511 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 455572 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 455633 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455694 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455755 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455816 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 455877 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455938 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455999 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 456060 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 456121 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 456182 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 456243 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 456304 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 456365 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 456427 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 456488 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 456549 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 456610 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 456671 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456732 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456793 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456854 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456915 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 473074-475038 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWZ01000002.1 Salmonella enterica isolate STY32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 473074 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 473135 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 473196 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 473257 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 473318 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 473379 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 473440 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 473502 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 473563 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 473624 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 473685 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 473746 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 473807 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 473868 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 473929 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473990 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 474051 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 474112 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 474173 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 474234 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 474295 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 474357 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 474460 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 474521 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 474582 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 474643 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 474704 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 474765 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 474826 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 474887 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 474948 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 475009 29 96.6 0 A............................ | A [475035] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //