Array 1 124010-125604 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBU010000019.1 Salmonella enterica isolate 1427_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 124010 29 96.6 32 ..T.......................... CTGTTTAACGCCTCATCCACCAGCGAAGCACC 124071 29 96.6 32 ..T.......................... CCGGGTTGCGCGACTTTTTAAAATTGGCGTAC 124132 29 96.6 32 ..T.......................... CAGCTTGTCGCCATCGCCGGCTTTCTCGTAAT 124193 29 100.0 32 ............................. ATCCACATTGGAACGTCAGGAACAGCGAGCTA 124254 29 100.0 32 ............................. AGATCGGAGATTGCATCGATACTGTTTACGGC 124315 29 100.0 32 ............................. CCATTCATTCGGTCACCCATGATTCTAAACAT 124376 29 100.0 32 ............................. CGTTTGAACAGGCTATGAACTGCACATGCAAA 124437 29 100.0 32 ............................. CTAATGAAATTTGGCTTGATGCCGCAAACAAA 124498 29 100.0 32 ............................. CACCCTGTAAAAATAAATTACTGCCCGTTTTG 124559 29 100.0 32 ............................. GGAGATCTAACCGTGCTGGATCGTAGATATGT 124620 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 124681 29 100.0 32 ............................. ACTGGGCCCGATTGTCAGCTGCTTTGGCGACA 124742 29 100.0 32 ............................. AGTTATGGCGTTATGGTCCGTCAGGTTGGATC 124803 29 100.0 32 ............................. CCGAAATACGATGCCGGAATATCGTAAACGGA 124864 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 124925 29 96.6 32 .............T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 124986 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 125047 29 96.6 32 .............T............... GCTTTTTGCAGTCACCGCAGATCAGCTTAAGG 125108 29 96.6 32 .............T............... CGGCGGGCCTCTCTCTCTGTTTGAGCTGTTAC 125169 29 96.6 32 .............T............... TCAGGAAAAAAACTGGAAGCATGGGTGATCGA 125230 29 96.6 32 .............T............... TCTAACGACAGCATTGTTGTAACCCATTGGAT 125291 29 100.0 74 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCACGTGTTCCCCGCGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 125394 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 125455 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 125516 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 125577 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 98.0 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 141876-143534 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBU010000019.1 Salmonella enterica isolate 1427_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 141876 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 141937 29 100.0 33 ............................. GGTGCTGACACCTCCAGTGTTTATGCGTTGCGG 141999 29 100.0 32 ............................. ACTTACGACCATTTAGACAAGGCGCAAAATTT 142060 29 100.0 32 ............................. CGACCGGACTCAACCGTATTAAAGCGCATATA 142121 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 142182 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 142243 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 142304 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 142365 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 142426 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 142487 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 142548 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 142609 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 142670 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 142731 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 142792 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 142853 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 142914 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [142956] 142956 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 143017 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 143078 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 143139 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 143200 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 143261 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 143322 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 143383 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 143444 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 143505 29 96.6 0 A............................ | A [143531] ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCTGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //