Array 1 22019-23181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWZ010000033.1 Paenibacillus dendritiformis strain CRN 18 S18_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 22019 32 100.0 37 ................................ CGATATCGAGGAATACGCAAAAAAGAAAAGAATCCGC 22088 32 100.0 35 ................................ CTGTATGATTCTTTGTTGTATGTATGGCAGATTGA 22155 32 100.0 35 ................................ CAAAGCGCAAGCAGTTTTCTAAGTGTGCAACGCCA 22222 32 100.0 35 ................................ CTCCGCTACTGATTGAAGTGGGGGAATCATCCGCG 22289 32 100.0 33 ................................ ATTACCTCACATGTAACAATGGGACGTATTACA 22354 32 100.0 34 ................................ GATCCGCACTGGAACGAAGGGCGTTGTAAGCTCT 22420 32 100.0 35 ................................ TTGGAAAAGGTGGGGGAACTCTTGAATGAAGCATT 22487 32 100.0 33 ................................ TGGTATTCTGGATCACCGGGCTGGAGATCGGCG 22552 32 100.0 33 ................................ AGCATATCTTCCCATTTGCCCATGTAATCCTCG 22617 32 100.0 34 ................................ AGGAGCTGGGCCACATATTCGCCCTTGACCATTC 22683 32 100.0 33 ................................ GCCATTACTTACCGCTCCCCGCTGTGTATTTTG 22748 32 100.0 35 ................................ CTCCGGGTACAGTGTCCGGGCCGTAAATGGATATT 22815 32 100.0 34 ................................ GTTTTTGCCGTGTGTGTACTCCACGTTCCGTAAG 22881 32 100.0 38 ................................ AATCAAGTTAAGAAGAAACTCAACTGCCACTCTATCAT 22951 32 100.0 34 ................................ TAAAATCAGTTGAGTCATCTTCGTAGCAACTCCA 23017 32 96.9 36 ...............A................ CCGCATACTGAAGCAAGTTTTTGTCTTCGCAGTGCT 23085 32 100.0 33 ................................ GAAGGAGGAACAATGGATGGCGAGCGATGTAAA 23150 32 93.8 0 .....................C...C...... | ========== ====== ====== ====== ================================ ====================================== ================== 18 32 99.5 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GCCGGTTGGATTAATTTTTATCGAACTGGATGGCGAGGCGGGCTATATCGGACTCATCACCGATCCATCCTTGCGCAATCAAGGGTATGGAAAAGCAATGGTGCGTGAACTTATGAATCATCCGGAACTGCAATCCGTACATACATGGGTGGCTTGCATCGAAGCCGACAATAAGCCATGTCTGGCTTGCTTCAAGTCCCTCGGCTATGTGACTGACGAGGAGGAGCCGGACGAGGACGGATTTTATAATTTGGTATATGAACGTTCATAAGTGAATGCGGCTACAAGAAGATTAGAACTATTCAAGCTCTGGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCATGAAATTTCTATATTATAGGAAAAATCCATCTTTTGGTTTGCGGCAAAGGTGAGAAACACCTGCTTTAGATTGATTTTATGGATAATTTGATTCATTTAATCAGAACAGGTACGAAAAATGATTGGAACAATCATTTTTCGCT # Right flank : TGTAGACCTCTCTAAGCAGTTCAAAAGCTCACATTGAGCGTCGCATTCTGCACGGACACATAGAAAACATGATGAGACCCAAAAAGCATCTACCCCCGTATCAAAAGATGACGTGGAGGCAGGATGCTTGTCTTTTTTTGTAGAACATAAGTTCCCTGACAGGGAGTTGTCACTTTCTTCAACCATAATAGAATTTATATCATCAGTACGAAGGAAGGTGAGGATGTACGCAGCTATGAATACGACAGTTAGCGAACAGCAACAATTGCATCCCAATGTGGTGCCATATTGGCGAATTTATCGGCTTTTTTCTGCATTGAAGCGGACTGCGCTGGCTAGCATCCCGATCATCGTTTATTTGATGTGGCTTCCCCAATGGAAGTGGATCTTCTATGTTGTTGCGGCCTATCTCTTGTTTCATTGGAGCAAAGACGTATTCTATATCATATATGGAGTTCGCTTCAGCTATGCCAGAAGAAGTTACGTTCTGACAAAGGATG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 34461-35365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWZ010000033.1 Paenibacillus dendritiformis strain CRN 18 S18_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 34461 32 100.0 35 ................................ ACCATCGAGCCCTCAAGCCACTTGGCGACCTCTGC 34528 32 100.0 35 ................................ CAGAGCAGCACTTGACCCATCCGGTAAAAATACAC 34595 32 100.0 38 ................................ CCTTGCACAAATTGACGCATTTCTAAGCCCATTAGTTC 34665 32 100.0 36 ................................ CATTGCATCACTATCGGTGTCAAGTTGCGCGATCAC 34733 32 100.0 34 ................................ AAGTCACATTCAATCGATTTCTGCGTCTGAATTT 34799 32 100.0 33 ................................ CACGATGTTGTTGAGCGCTTCTTGCTCGCGCGA 34864 32 100.0 35 ................................ TTCATGGGATCCCAATCAACCGGGCGGCTGAAATC 34931 32 100.0 36 ................................ ACCTCATGATCAAGGCGGACGTTCATCCGGCGGGCT 34999 32 100.0 36 ................................ CATCTCGTTGGTACTGTCGGTCGTAGTAGACGGGTC 35067 32 100.0 35 ................................ TTCTTTATCTAAGTGTACATACTCATGATCTCGAT 35134 32 100.0 33 ................................ ATTTTCTACGTCTGTAAACTCTTTGTTGATAAG 35199 32 100.0 34 ................................ GACTCGATGCGGGCCTTGTTTACTTGACATGAAA 35265 32 100.0 37 ................................ CGCGCCTCACTTGGGTTGAGATCGACCAGTTTAAATG 35334 32 90.6 0 ...........C.CA................. | ========== ====== ====== ====== ================================ ====================================== ================== 14 32 99.3 35 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : CTGGAAGTAGGTGGTATAATTTGTTGGTACTAATCACTTATGATGTCAGCACGACCAGTATTGCCGGGCAGCGCAGGTTACGTAAAGTCGCAAAGTTATGCCAAAATTATGGTCAGAGAGTGCAAAACTCTGTTTTTGAATGCAATGTAGACGCAGCTCAGTTCGCCAGCTTGAAGATCCAACTTATCGATATGATCGATGAAAAGGAAGATAGCCTGCGATTTTATCAATTAGGAAACAACTACAAAAGCAAGGTGGAGCATATTGGTGTGAAGGCATCGATCGATATGGAAGGGACCCTAATTTTCTAGTGCGAATGTGTAGTGCACATGAATTCCCCGGGGGATTCGCACCATGTTTTTTCTATATTATGGGTAAAACTATTTTGTAGGTTGAATGTAGGAGTAGGAAATAAGCAGTTTTTAGCTCTATGGATCAGTAATTTTGATTGATTGCGTCATATCAAGAGTGAAATGTGATTATTGCAATCATTTTTCGCC # Right flank : TGAACGTCGAAGGATACGGTATCCCCGGCTGTAGATTTCCCCAATCCCCAACCCGGGGAAGCCTTTCTTCTCTCCCCTCATACCTAATCGTTCACCTCCCAACTCCCTCCACCCAAAAATACAACGGCAGCTTTCCCCGTACATGCACTTCTGGGCCATCGCCTACATACAATGTATCACTGCGCCGGGATTCGGCTTGCTGCGAAGAGAGACCGCTAGGCGCAAGTCGCAGAATAGAACGTTGTCAGACTCCTGGAGGTGGCTAGCATGACGGGTTTATTTGCTGCAATCGCCGTGTTCATCAAGCAATTGACGCTGCTTGTATCCTACGTCAAGAACAATGCGTTTCCGCAGCCGTTGGCGGAAGAGGATGAGATGAAGCATTTGCAGCGGATGGCGGAAGGCAATGCACAGTCGCGCAACACGCTCATTGAGCACAATCTCCGCCTGGTTGCGCATATCGTGAAGAAATTCGACAACACCGGAGAAGACTTGGAGGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29987-30624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWZ010000068.1 Paenibacillus dendritiformis strain CRN 18 S18_contig_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 29987 32 100.0 34 ................................ GTTGATCCGTCAGTACGAAGAAATGTTAAGGCAG 30053 32 100.0 38 ................................ AAGGATAAGGTGGAACTGGCTGGACAGGATGGCGGACC 30123 32 100.0 33 ................................ GATACAACTAACGCTACTGGAAGACTTTTTATT 30188 32 100.0 33 ................................ CCTGCCCGTTATCTCCCAAAATTTCATTGTGCT 30253 32 100.0 35 ................................ CCTGTAGTATTAGGAGGATTGTACATATGCCGACT 30320 32 100.0 36 ................................ CGAAATAAGTGCTTAGTAGTGCTGGATGAGTGTGGG 30388 32 100.0 36 ................................ GTGGACGCTGCCACAGGTGAGTTTAGAATCGTGCCT 30456 32 100.0 36 ................................ CTCCGAACCACCATCATAAAGGACTGATATATGACC 30524 32 100.0 34 ................................ GAGGGGCTGACGGCGGAGGAACTGCGCACGCGCT 30590 32 81.2 0 .......................C..GCC.GG | CA,A [30610,30614] ========== ====== ====== ====== ================================ ====================================== ================== 10 32 98.1 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TTCATCTGGCTGACCTGCTGGTGCCGAATGGCTGCCCCCAAACCCTATAACCCGTTAGAGTCAGCGGCAATGATGTATTTCCTCGTCTTTGCCCTGTGTTGCCAGGCCCCAGGCCAACAACCGGGGCTTGCCCTCGCCTTAGTGCCCCCCCAAGGAATGGATTACTCGTGGCGCAACGGCCGTTACCTTATCCCGTGACTCATGATATACTTAATGAGAGAACAAGTTGAGGAAGCGGACAGAATGAGGATAATATCCGGCCCCTTCGGCCCGGCGAGGAAAGCGGAGTCGTGCGATTTTGATGATTAGGCACACGACGGGTGCGAATGTGAAGCGCACATGAATTCCCCGGGACATTCGCACCATGGTTTTTACATTATTATCCAAATAAACCGAAGAAGAGTTATGGATTTAACGTAATTTTTGGTTCATATATCTATTTTATGGTTTTATTCAATCATACTTGAACGGATATTTTACACATTCAGTCAATTTTCGCA # Right flank : GAGGCATAACGCTTCACTGCACTTGTTTTAACTAACTCGATTTGACGTGTAGAAAACGGACAATCGGCACTTATATTCAACCGTGTCCGATCACACTAAATGTTGAACAAATAAAAACCAGCTAATGTTTGTCAAGCTGCACCCTTGGTGATTTAATGAGTTACTGATATACTGGTTTTTGTGCACGACAAAAAAACTCCATTGGCGTGGAGCATTTTTAGAATTGAATAAGTTTATGCTTGATAAGGCTGGCCTCTATTCAAGATAGCGTAAATGTGATGCAGTAGCTTGTTGGCGCAAGCGATCACCGTTACCTTGTTAGGCTTGCCTTCTTTCTTTTTTCGTTCGTATTACGATACTAACCGTCTATTACTTCCTTGCCGAAGTCCACATTGTACAGCAAGATACAACGATCTGCGCAGACGTTTTGAGCCGCGTTTCGTGATCCGGTTGCTGCTAGCTGTAAATTTACCCGAACGATATACACTCGGATCTAGTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5224-1843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWZ010000001.1 Paenibacillus dendritiformis strain CRN 18 S18_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 5223 30 100.0 37 .............................. CCATCTAACTCAATCTTGTCTAATACCTTCTTTTTCA 5156 30 100.0 36 .............................. AAAACTGCGTACCCCCTTTGGGTCATAGAGCACATT 5090 30 100.0 37 .............................. ATTTTATAGTTCATATGTATTAGAATAGAGAAATAAC 5023 30 100.0 39 .............................. TCCCCATCCGTTATGGGGTCTACCTTGTATAGCTCCAAA 4954 30 100.0 36 .............................. CCGTCAGGCTAACCTTTTTTTCAGACTCCGGAATTC 4888 30 100.0 37 .............................. AGCTTAAAACGCTCGTCACTACTAAATTCCCGTTTTC 4821 30 100.0 37 .............................. ACAATGGGGGCTATGCTGGCATAGTCCCCTTTGCATA 4754 30 100.0 40 .............................. CAGGTTCCCCCTCATAATTAAATAGCCCCCGGGTATCCCG 4684 30 100.0 35 .............................. GTCTGTGGAATCATAAGGCTCCTTTCTTGGGCACC 4619 30 100.0 36 .............................. TTGCTTCGTTTCTGTTGTTTCGATAATTTCCTTGCA 4553 30 100.0 38 .............................. ATGGCCTCGGTGACCGGCAATGCGGCCACATACTCACG 4485 30 100.0 37 .............................. CGTGTAATATCGCGCAGCCGCAAGCGCGAGAATCAGT 4418 30 100.0 34 .............................. CGAATCAAATAGGAGCGCATGCTAGCAATAGCTA 4354 30 100.0 35 .............................. CGGGAACGTCTTGCGGAAATTGAAAAGCTGAAAGC 4289 30 100.0 39 .............................. CGGCTATGGGAGAGGAAGAATTACGGGAACGTCTTGCGG 4220 30 100.0 39 .............................. CCGTTCCGTTGCTCATCGCAAAATCGATTGAATGGGGCA 4151 30 100.0 38 .............................. AAGACTTGTTTGCCGTAACGCCAGGCATAAATCCCGGC 4083 30 100.0 35 .............................. TGGCATGATGCCGTGCAACGTGCTGGGGGATACGG 4018 30 100.0 39 .............................. CAACTCTAGAGTTGGGACTTGGTACAAAAATGGTCTCCA 3949 30 100.0 38 .............................. TCAGAAAAGCGAAAGACTACGGACGATATGGGCGTGTT 3881 30 100.0 38 .............................. TTTGCAAAATGGATGACCTGGCTTTGTCCCTGACCGGA 3813 30 100.0 36 .............................. CCGGGAAGCAGGCGGACATTTAACCATGCTTACACT 3747 30 100.0 39 .............................. CTTCGCGACGACTTTGAACACTTGCTTACCGTAGCGCCA 3678 30 100.0 38 .............................. ACCCCATCTTCAATCGTCTTGCCAGCCTGTATACGCTC 3610 30 100.0 39 .............................. AATCCAACCTTGTCAGCTTACCATGCAACAGTATTCTGG 3541 30 100.0 39 .............................. CATAACGTTTTGTAAGAAGGGGGGAGATAGCAATAAGGC 3472 30 100.0 36 .............................. TTCGTTCAGAACGAAGGCGATGATTCGGATGGAACG 3406 30 100.0 39 .............................. GAATAATGGAAAAAATAGTGTTGACTAAAATGGAAGATT 3337 30 100.0 40 .............................. ACTGATGAGGTAGTATCGACTTTTGAATCGGCACTCTCTG 3267 30 100.0 36 .............................. TGTCGATATTGGATTTAATCGTGAACTGAGCCCGTA 3201 30 100.0 35 .............................. TTGGCGGGCCATCTGCTATCTTCGGCATCTTATCA 3136 30 100.0 38 .............................. TATTTCCCGCCACTTGCGCCACCTCCGTTATTTTGCGG 3068 30 100.0 36 .............................. TCACTAAGGGACTTTTGTATCAATCAGAGGGTCTGC 3002 30 100.0 38 .............................. AACAAAATGAAGACAAAAACGACAAAAACGCATACCGA 2934 30 100.0 35 .............................. CATGGCAGGGGTAGCAAAAATCACGAAAGAGCAAA 2869 30 100.0 39 .............................. CCATCAGTTCTTGATGATGCTTCGGCGCGTATGATGGCC 2800 30 100.0 37 .............................. TATCATTTGGCATTGTCTTCGGCCTTGTAATGGCAGT 2733 30 100.0 36 .............................. CAGCTGACGGTGCACCTGTCATCCCTCGTCCAGCAC 2667 30 100.0 38 .............................. TTATTGGTGTTTGGTCAATAATAACTTCAGTCATTGTA 2599 30 100.0 39 .............................. ATCGTCGGTGGGAAAGCGATCGGCGTGAATAAGTGGTAC 2530 30 100.0 35 .............................. AACATTTGGTTGCGAATAACAGCTTTATGTTCCGC 2465 30 93.3 38 ....A............A............ CAATGCTAGACCGGCATTTAAAATTGCCGGACTGCCTG 2397 30 100.0 28 .............................. TCAAATTGGCGGCTGGGCAAGCTTCAGC Deletion [2340] 2339 30 100.0 38 .............................. CATTTAGGCTGCCTGGGTGGCTCATCAAGGCGATAAAA 2271 30 100.0 36 .............................. AATACGCTCCGAGCCGGCGACGCCGTAAAGTTGAAC 2205 30 100.0 39 .............................. TCCATCTTGATTTTCCATTGCGCCCCTGCAAATTCTGCC 2136 30 93.3 36 A.......T..................... TTTGCCCAATTACTGATCCGTTGAGGCGAATAACCG 2070 30 100.0 34 .............................. CCGCCCTAAGACAAAAGACTACATAGCACCGGAC 2006 30 100.0 35 .............................. TGCAACCCGGCCCGACCGGACGCAGACCATTGGTC 1941 30 96.7 39 ............T................. TGCTCAAGGAACACACCGGATGTACTGATATAGATGCAA 1872 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 51 30 99.7 37 GTTTGTAACGTACCTATGAGGAGTTGAAAT # Left flank : TCATGAATGAAAAAAAGTACGAGCCGTTTGAAGCATTATGGTGAGCGTGAGAGGGGGAATGATCCGATTGTTTCGTTATTCTCGTATATGATTTTGGGGAGAAACGTGTTGCCAAGGCATTGAAGACGTGCCGAAAATATTTGAATTGGGTACAAAACTCTGTGTTTGAAGGGGAAATTTCGGAAGTCAATTTAAAAAAACTGAAAGCCGAATTACAAAGAGTTATGGATGAGAAAGAAGACTCTATCATTATCTATACATGGCGAACGCAACGGTACACCCAACGCGAAATCATGGGTGTTGAAAAAAACGAGATCAGTTTCATTCTCTAAAATGCTGTCGTCGACCCCCAATAGCGCAAAAACCCCGGGGGATCGACGACAAATGATTTTTGAGCAAATCCTATGGTATCAGGGAAAAATATGATACATTAATTTTGTGGTAGATTCATCCATATTCCAAAAACCTGAAAAAATGCCGTTATTATAGCCTTTTTACGG # Right flank : CTCGCTCCAATGGCTTCTTCCCAGCGAATTCGAGCCCCGTTTGTACTTTTTCTGCAACTAACCAGACCCAACTCCCCAAATCTCTTTTCACTTTTGCATGGAAATACCTAACCAACCTCAAAAACACATGATCTTACCCTCAGCGTCTCCCACCAGGAGGCGCTTTTCTCTATTTCCCCGGCCACCCCCAGCTCCTTTCCATAAGCCTCTTTTCCTGATTCGCCCCGACATCCCCCAAATAAGTCCACCGCTCCACCTAGCAACGCCCATCACTAAAAAACAAAAATATTGAATATTTTGAGGTTTGTTTATGTAAGTATGTACCATGTCAGCATACTATCCGGTCAGTATGTTTCGGGGGAAGGGGGATGGGCTAGTGAATTTTGATTATTCCGAGAAGGTGAAGTCGCTGCAGCGTACGCTGCTGGAGTTCATGGATGAAGTGGTGTATCCGAACGAGAAGACGTATGAGAAGCAGCTTCAGCAGGCCGGCAGCAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAACGTACCTATGAGGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 16441-14675 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWZ010000001.1 Paenibacillus dendritiformis strain CRN 18 S18_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 16440 30 100.0 35 .............................. TCGGATACTCGCGACATCTCTCGGGCCCCGATCTG 16375 30 100.0 36 .............................. ATCAAAAGGGTGACGTTGGGGTGGACACGCCTGCGG 16309 30 100.0 37 .............................. CCGAATCGAGCTCCGCTACCACACGACGCCCTTCGAG 16242 30 100.0 36 .............................. CGAATTCGTTTCCTTTCTCGCTGCCGTGGGATGTTA 16176 30 100.0 36 .............................. ATTCGCGGGACTGGCAGATAGAACGTGGTCAGCGCA 16110 30 100.0 35 .............................. TCTTGTAGTCCTGGCTTCCACCGCGTCCATCTCCA 16045 30 100.0 37 .............................. ATGGCTATTGTCTTGACGGTTGCTGTCATGTGCATTG 15978 30 100.0 40 .............................. TTGTCCAGGACGACCAGTCGATTAATAAGACGATCGGCAA 15908 30 100.0 38 .............................. TTCGGAAGATTGGAATTTTACCCTGTCGGAGGCGATCA 15840 30 100.0 35 .............................. TCGAATTAAACACACGTATAGCGATACTAATCATG 15775 30 100.0 36 .............................. TACGACCATCAGCGAGGCGATGAATGAATGGAAAGC 15709 30 100.0 37 .............................. ACAGCGGATTCAAATCCGTTTCTTGGCTGTATTTCCT 15642 30 100.0 39 .............................. CTCGAATTGACCTCGGGGCAGCACGCAGATGAGTAGGAC 15573 30 100.0 35 .............................. CAATATGGAGGATGATTTTACATGGCAGGGGTAGC 15508 30 96.7 36 A............................. TCGCGGGCATGCTGCCTATCATGAGCTTTTTGCTCG 15442 30 100.0 39 .............................. ATGCATGGCAAGAGTATGAAAAAGGACGTAAATATCAAA 15373 30 93.3 38 ........A.......T............. CACTGTAGACCACTTGTGGCTGACTCCATTGAAGTAAA 15305 30 93.3 38 ........A.......T............. AACGGCTTTGTAGTCGCAGACCATTGTATAGGGTTCCC 15237 30 93.3 36 ........A.......T............. CCGTCACCATACTTGCTTTTAGGAGATATTTGCAGT 15171 30 93.3 36 ........A.......T............. TTTCTTTAGAATCACCGTTTTTGTTCATGTCACCTA 15105 30 93.3 38 ........A.......T............. ATGAGCATGGCCCTGACTTCACCGATATGTGTCCCTTG 15037 30 93.3 36 ........A.......T............. CTTAAAGTTGCTATCGTATATAACAGGTCTATACGA 14971 30 93.3 36 ........A.......T............. CTCTCATAAAATTCGGTTTGCTCCAGCTCTGCGATC 14905 30 93.3 35 ........A.......T............. CCTTAGGCAGCCATCCTACGCCTGGCGGCATGATG 14840 30 93.3 38 ........A.......T............. ACATTTACGGGAGGTGATTAGCGATAGACAAACTCGAT 14772 30 93.3 37 ........A.......T............. ATGCTAGGAGGAGAATTGGGAGGTGAGAATTCTATCT 14705 30 86.7 0 ........A.......T........T...A | T [14677] ========== ====== ====== ====== ============================== ======================================== ================== 27 30 96.9 37 GTTTTGAATGTACCTAAGAGGAATTGAAAT # Left flank : GCTTGGCATGTATGAAGAGCAAATCGTTGAAGAAATGACTAGTTTGTATACCACTCCTTATAAGAGAGCCACTTTTGGCCGATATTACCGCCTCAAGGGGAGAGTGCTAGAAAGTCAAAATAAATTAATTGAAGCTATTGATTGTTATTTGCAAAGCTCCATAGAGTACGCCCAAATATCCCGATATGACGAAGTTTTCAATTCAATGTCGCATGTTACTAGGGATCGTACCCTGAGGAGTATAGCTCCCGTTGTTCTTAACCCGATTTAGTATAAGAATGGGGAAACAACTAATCAGGTTTTTCTTTATTTTGTCGTCGATCCCTAATAGCGTAAAAACCCCCGGGGATCGACGACAACTTGAAAAATGAAGAAATGAGAAGGGGAATGTAGATTATTGGAGATAACATTATGACTTGCGTTGTTTATCAACTTAGAGCTATTGGCTTGTAGGACCAATAGCTGTCTGATAGAATTGGCGTAGGGAGGCACTTTTTGGG # Right flank : CTACGTTGACAAATCCCTATGAGTGGCAGCTACGCCTAGCTTACTCATAGGGCATTTTTGTTTTTATGGATTCCTTTAGTCAGAATATTTGACAAAAATACAACAACTTCGAGAAATAAATTGGAAAATAAACGAAGAGGTAGTATGATCGAACTAGTTAAATCAGGAGGGACTAGTCTTTGAGAATCAAGATTACATTGACCTTTGATGGCAAGCTTGTTGTACCTATCAATCATCAGGAATGGCTTCACGGGCTTATTTATCACAGTATCCGCGACGACGGATACCGGGATTTTCTTCACAATACGGGTTACCAGCAGGGGAAACGCCAATTTCGCATGTTCACCTTCTCTAGGCTAAATGGTTCATATCGATTAGACAAGGACTCCCACACCTTAGAATTTTCACCACCGCATGTTTCTTTCCTTTTCTCGGCATACGATAAAAAATTAGTTCAAGAATTGGTATCTTCTTTGCTGATAAGAGATGATCTTCGTATG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAATGTACCTAAGAGGAATTGAAAT # Alternate repeat : GTTTTGAAAGTACCTATGAGGAATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 19709-18148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWZ010000001.1 Paenibacillus dendritiformis strain CRN 18 S18_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 19708 30 100.0 35 .............................. ATAGTTTGCAAATTTAAAACGCCCTCAAACTCGTC 19643 30 100.0 37 .............................. CGAGTCCGGAATAACGAATAATAAACCATGGCAAATT 19576 30 100.0 37 .............................. TTGGGCAGCCGCTAACTTTTTCGTTCCGTTCGGGGCA 19509 30 100.0 36 .............................. TCGGGAGAGTGGAGAGATTGACGGATTTACACATCC 19443 30 100.0 36 .............................. TTACCGAAAGCGGTGTTAATTACGAGCGTGTCGTGC 19377 30 100.0 36 .............................. ACCGATTCAAGGATTTTGGGCCTGTATCGCCATATG 19311 30 100.0 37 .............................. TTGGGATGGGTGATAGGTAAGTGGGTTGCATATCAGA 19244 30 100.0 39 .............................. TATGATTAGCATGTATTCGGGCACGATAGGCAGCGGCAA 19175 30 96.7 37 .............................A TATCACATCGGTTGAAAAAAAGCAGAAGGATGAAAGA 19108 30 100.0 36 .............................. TCTAACCGCTGGACGGTATCAGGCGGTGGATAAAAC 19042 30 100.0 37 .............................. CAGTGTCGATGTAGATGGAATCACTAGTTTTCGTAAG 18975 30 100.0 36 .............................. TCAAACTCAGAACCGTCTATTTTTGCTACGATCTCA 18909 30 100.0 37 .............................. ACCTGCGACGGTTGCTGTGGAATCGGCTCTACATCGA 18842 30 100.0 37 .............................. GCGACATAAATAAGCGCCGCTGGGCGAAATGAGGAGG 18775 30 100.0 37 .............................. TTTAGATGTTGGGGTATATAGGCCCGGCGACCGTTCT 18708 30 100.0 38 .............................. TCAGTCAAGCCATTCATTCGCTCGCCTATCCGTTGTAG 18640 30 100.0 36 .............................. ATTGGTTGATAGACCTTGTTGCGGATATCGTTCTTG 18574 30 100.0 35 .............................. AAATGTGCCAAGGGGTGATTTTGTGCAAAAAAATT 18509 30 100.0 35 .............................. TATCGTGACTACAATCATCACGACGCCTGGCAAAA 18444 30 100.0 36 .............................. CGTCTCCATCCGCGATCTCGTCTAGGGCGGTTACTT 18378 30 100.0 37 .............................. TAGTCATATGTTTTCTCTTGCTCGTTCCATGTACCGC 18311 30 100.0 37 .............................. TTCTGTACACAAATCCTGCGGCGGAATCATCGATTTT 18244 30 100.0 37 .............................. TAACGCGATATCGTAGATCGTCGTCTATCGGCCCCCA 18177 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 24 30 99.9 37 GTTTTGGAAGTACCTATGAGGAATTGAAAT # Left flank : AGATGATCATAAGAGCCTGCCTATAGAGGACCCCCCCGCCATCTTTCCCGCTGTGGGCGCCTACCTTGACGATAACGGATACATAGACATTCTGGCCGTTGGAGATTTGAGAGCCTATCTAACGGGGAAATGAGTGATAGCCCTGGTAGTATGCCGGGGTTTTTAGGCGCTTGTCGATATTTGCGAAGTATTATAGAATGTGTCGAAATATCCTGATATGACGAGTTTTCAATGTCGCACGCTGCTAGAAGTGGCAGCATGAGAAGGATACCTCCTGTTGCCATAATCCGTTTGTATATTCTCCATTTTTTTGTCGTCGATCCCTAGTAGCGTAATAACCCCGGGGGATCGACGACAACTTGAAATATGAAGAAATGAGAAGAGAAATGTAGATTATTGGAGATAACATTATGACTTGCGTTGTTTATCAATTTAGAGCTATTGGCTTGTAGGAGCAATAGCGGTCTGATAGAATTGGCGTAGGGACGGCATTTTTTGGG # Right flank : CCATCTTCTTCCGCGATGGTGATCTGCTTCGCGCTTGTTCTGAAATTGCGATAGCTCATTGAAACTGACAGGGGAACACAACAGTTTTTGCCTGTAAATGATTTCATGTGGTTCATTCCGAAACGGATGAATAAACCATTATTGCTGTTGGAAGTATAAGTAAGTTTTGTTTTCGTCCCCCCACTTAGTGTGGTAAAATATAGGAACTATATTTTTCACTAGTTAGGAGGGATGAAGTTGCATGTCTCGCTCATAGGAACAATGGGAGAACTATTTCATATACAGGCGCAGCCAAAACATGACATTAGCACAACTCTCAGACTTATCCGGAAATTCCTAAGGGGACGATATCCAGAATAGAGAATGAAGAAGTAAAAAGGCCCGAATTTGGAACAATTCAACCGCTTGCCTCCGCTTTAGTGATACCATTTCAGGAAGTGGTCGAACGCTACATAGAGATTGATAAACGCTCTCATTCTTTATTAGAGATACTAAAGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAAGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 50529-50034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWZ010000013.1 Paenibacillus dendritiformis strain CRN 18 S18_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 50528 32 100.0 35 ................................ TTCTACCACGTCTTTGAGCAGCACCCGATTCACCT 50461 32 100.0 33 ................................ TATAAAAAGATCGATGGCCTCATAATAACCTAT 50396 32 100.0 34 ................................ AATATGAGAAGGATTGGGATCTCGGGGATATTGT 50330 32 100.0 35 ................................ ATTTTCCCGCAAGTGCTGGTAAATCTCCTTATCAT 50263 32 100.0 33 ................................ ACACAAAAGATTGAACTGTCTTAGATGATTGCT 50198 32 100.0 34 ................................ TTCACCCAGCAATTCATATACCTTGGCATCAATT 50132 32 96.9 35 ...............................T GTAAACCAGTCCCAATGCTTCTCAAGCGTGGCCTC 50065 32 81.2 0 ...................A.......ATTCT | ========== ====== ====== ====== ================================ =================================== ================== 8 32 97.3 34 GTCGCATCCTATGCGGATGCGTGGATTGAAAG # Left flank : ATGACGCTTTGTAATCGGAATCCCCTCGGAATTTGTCGCATCCTATGTGGATGCGTGGATTGAAATCGCAGATGTCGCACCAGCCATCAAGTCAGCTTCTTCGTCGCATCCTATGTGGATGCGTGGATTGAAATTCGCTCAATCCCACAACCACACCATGCTGGTCCCGTGTCGTATCCTTATGATACCTTGCTTTCTGCTTGAGTCAGTCGGGACGATTCGTTGGATTCTCTGTTTGCCTGTGATATATTGGGCAAAGGAATGGTAAGAGCCAACTAGAGTGAAGGGGATGTCCAAATATGAAAAAGAGCGACATGTGCATTAACAACAGGTGCGAATGTGAAGTGCACAAGAAATCCCCGGGAGATTCGCACCAATTTTATTGAAATATTATCCAATAAAGTTAATTGAATTTTGATTATTGAATCTAAATTGATTTGTTTTCTTGAAGTTTTTACCATCAAACAGCTTTTTTGGTCTGTTTTGTGTTATTTTTCGCT # Right flank : TTAAACGCTGTTGAAGCACCGCGAAGGAAAAAAATGTCACATTCTAAGTAAATTCCTGCTAAACTGATTTGACGATGTTTATTTCTAATCGCTTGGTACAAAATCGTTGTTTTGAAATGATATGGGTTTAAGGGGGAAAGGATGAAGCGGGAATCATAGGGATCTATGGTGAGAGCCGTAGCAAGAATCTTTCCAGTTCTCCTCCTTTTGTGATCGCTTTATTTTCATTCAAGCATTGGTTTCCTTATCCGTGGCTATAAGGAAATATTGTTATATCGAATTGAATACCCTGTGCCCCGACCCATCCCCAGCGGGATGGGTTCGCTTCGCTACGGAACGACGACTTATCCGCAGTGATTTCCCAACCTTGAATTAGTTGATTTTTCGCTTTCTTGGATGCTTCCCTCCTCTCCCTCCATTGTGTGAGGAACTTGTCGAATCTCCACGTTTATCGGTTCCTTCTCTCCCGACTTTTTTTAAGGCTTATTCACCTTGCTCTT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGCGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 51268-50895 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWZ010000013.1 Paenibacillus dendritiformis strain CRN 18 S18_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 51267 32 100.0 35 ................................ CATGCTCAGAAGCCGAAGCCTGATGTGCTGCATAT 51200 32 100.0 37 ................................ AGATAAACACAAAACCGCGCTAAGGATCGGGGAGAAG 51131 32 100.0 37 ................................ TCGACGTCATCGCGAAGTACCCGCAGATTGACCGGAC 51062 32 100.0 36 ................................ GAATGACGCTTTGTAATCGGAATCCCCTCGGAATTT 50994 32 100.0 36 ................................ CGCAGATGTCGCACCAGCCATCAAGTCAGCTTCTTC 50926 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 100.0 36 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : | # Right flank : TCGCTCAATCCCACAACCACACCATGCTGGTCCCGTGTCGTATCCTTATGATACCTTGCTTTCTGCTTGAGTCAGTCGGGACGATTCGTTGGATTCTCTGTTTGCCTGTGATATATTGGGCAAAGGAATGGTAAGAGCCAACTAGAGTGAAGGGGATGTCCAAATATGAAAAAGAGCGACATGTGCATTAACAACAGGTGCGAATGTGAAGTGCACAAGAAATCCCCGGGAGATTCGCACCAATTTTATTGAAATATTATCCAATAAAGTTAATTGAATTTTGATTATTGAATCTAAATTGATTTGTTTTCTTGAAGTTTTTACCATCAAACAGCTTTTTTGGTCTGTTTTGTGTTATTTTTCGCTGTCGCATCCTATGCGGATGCGTGGATTGAAAGTTCTACCACGTCTTTGAGCAGCACCCGATTCACCTGTCGCATCCTATGCGGATGCGTGGATTGAAAGTATAAAAAGATCGATGGCCTCATAATAACCTATGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8167-8532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWZ010000141.1 Paenibacillus dendritiformis strain CRN 18 S18_contig_141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8167 32 100.0 35 ................................ AAGGAATGCGCTGAACTATCCGAATACGAGAAATA 8234 32 100.0 35 ................................ CACCCAGTCTATTCATCCCATCTCATCAATCCACC 8301 32 100.0 36 ................................ TCGTTTTCTCTTCTCGTGATACCTCCAACGACATTT 8369 32 100.0 34 ................................ GATCTGGCTGCAGATATCATGCTGCCAATCGGTA 8435 32 100.0 34 ................................ GATGTACATGTCTTCGCCCTCGGCCGCTCGTGTC 8501 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 100.0 35 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : CCGGCCTTTTGCGGCACTTTTGCTTCCATGCTTTAACGTGGGGTCGCATTAGTACCGGGTATTTTTATGAAGGCTTTGGCTAACCATAGCAGGCATACGCCAGGATATCCGACCGAATGCACTCTTTCTCATTATTGATTTGAGATACTGCGTGTTCTAACTGTCTGCAAAGTTACCCATCACGACGAGCGGCTGATTCGCTGCCTGATTGATTCTATCGGGAGATGCGTATAAAAGTATCTTCTTAGCACACTTGTCCGTGATATACTAAGAAGTATGGTGCCGAAGATGCCAAAGTTGGCCGAGACATTCGGACGCACGGCCACTTCGGTGCGAATGTGAAGTGCACATGAAATCCCCGGGAGATTCGCACCATATTTATTGAAATATTATCCATAATAGTTAATTTATTTTGGTTTATTGAAGCTAAACTGATTTGTTTTCTTGAAGTTTTTAACCATGAAACGATTGTTTTGGTATGTTTTGTGCTATTTTTCGCT # Right flank : | # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 53648-52954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWZ010000014.1 Paenibacillus dendritiformis strain CRN 18 S18_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 53647 32 100.0 34 ................................ CAAAATTCGGCTCGCTTTTGAAAAACGACTTACC 53581 32 100.0 33 ................................ CAAGCGGGGCTGGAACTACAGAAGCCAATCGTT 53516 32 100.0 34 ................................ ATAAAAATCGGAGGTGAAAATCAATGGTCGTAAC 53450 32 100.0 35 ................................ CCTTGAACTGGAGCGCAGATGGAACAGTCCGGAGA 53383 32 100.0 34 ................................ TTCAGGCGCCGGAACCGTATCGGTGTCCTGCGTC 53317 32 100.0 34 ................................ CACGCCGTAGTGATATTATATAAGGTAAATATTG 53251 32 100.0 34 ................................ GCCCCAAATCACGGGCATGAAGCCGATTTTGTTA 53185 32 96.9 35 ............A................... ATGTAGATCTTTTCAATCGCATCTACCGGTTGCAC 53118 32 96.9 34 ............A................... TTCGAGTTTTCTTATCGGATCTTCCCGCATCTCA 53052 32 100.0 33 ................................ CGCGATGCAACTACCAAAGCCGCGACGCTAATG 52987 32 90.6 0 .......................A....CT.. | TA [52960] ========== ====== ====== ====== ================================ =================================== ================== 11 32 98.6 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AGAAAGCGATCGGCGAGGGCGGCCGGACGTTGCCGCGCATGCTGTTCACGAACAAAACTTATACGTTCACGTCCGTCCACTTCCTCCAGAAACGAAAGGCGCCTGGCCGTTTTGCTGATAGACAGAGACTCATCGAGACAGACGGTATCCGGAAAGCATGGATAGATAGGGGAACGCTCCTTGATGGTTTTTGCTTGAAGCCGTCTGTCAAGGACTTAGCGCCACACATGTAGTATGATATACTCAGAATCAGGATAAAGATGTAATTGACAAAATCGCATTTATTCCGTGTGATGCCCAAAATCTCATTCCGTGGCAAGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGATTCGCACCAAGTTTATTTAAAAATAATCCAAATTAGTTATTTTAAGGTATTTTTTTCGAGACTGTTTCTGGTTAAATATCTCATTTTGTTCCGGAATAGTGGTAATTAACTGATTAATTTGTCATGTTTTATGTTATTTTTCGCT # Right flank : GCTCTTGAACGGCGGGATGTTTGGTCGCGTCCAAATGCGATGAAGCGGAATGGAACAATGCTTCCAGTCCGGGCATGGTGGCTGTTCGTTGGAATGAGAGGCGGCGGAATCCATAACGCAGTATGCCTGAGCTGTCTCGCACTTTTTGTCGCATCGTGCCGGAGTGCAGGGCATAAATCAATGCATAGCCATAGACCGCTCCCTCTGTGCACTCTCCCCTTCGGTCAGAAATGTGCTCGTTCTGAGCGGATGGGAGAGTGCTCATAAGGAAGAGAAGAGGGGAAGAATGCCCCGAGCACAGAGCGGAGGATCGTGGGGTAAAAGGCAAAGAGCCCAGCCCAGACGACGGCACATCGTGTCTTGAGCGGGGCAACGGATTTTGCTCCGAGGGGATACGTTAAGCGTTGGCCCACCAAGAAAAGCTCCCCTCACGTTCCCGGTTTATTCGGAGGCGGGCAAGACGCCCTTCAATGGAATGTCGGTCGTTATGCGGCGCACTC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : GTCGCATCCTACACGGATGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 40507-41134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWZ010000151.1 Paenibacillus dendritiformis strain CRN 18 S18_contig_151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 40507 32 100.0 38 ................................ CAGAACACCCCAACGCACATAATCCCAACCAGAAGCCC 40577 32 100.0 34 ................................ CGCCAGCGGATAAATCTCTTCACCAGTCGGCATA 40643 32 100.0 33 ................................ GTGATTAAAAGTGATGGGCGTCAGGTATAGGAC 40708 32 100.0 34 ................................ CGATCTGCTTTGGCTGACAGTTCGCGATGTTCGC 40774 32 100.0 34 ................................ TTTTGAGCATTGCGCAGCTCATCGTGCAGCAGCG 40840 32 100.0 35 ................................ AACAAACGGTAGAAAACGGAATTTACATTTATATC 40907 32 100.0 32 ................................ CCGAAATTAATCGAGCGAGAGAGCGGATTTGG 40971 32 100.0 34 ................................ ATTAATATCAAATCGTGGTCGGACCTCGGCGACT 41037 32 100.0 34 ................................ CTCCGGGATGATCCATTCGTACTCCGGACGGAGC 41103 32 81.2 0 ...C......G.....A...C..A.......C | ========== ====== ====== ====== ================================ ====================================== ================== 10 32 98.1 34 GTCGCATCCTACGCGGGTGCGTGGATTGAAAT # Left flank : AAGGAACGAAGCAACTCGACAAATAGCTTTTTACTGGACAACAGAAAGCGATATGATGTATCGTGACGGTAATGAATCGATTGGCGTTCGTCGGATTCCGTTCCCATCGCTGCCCCTCCTTCCTGCCATCTTTTCCTTTATTATACCTGATTATAAGTCGTGGGGAACAGGGGGGGAATCCAGCCGAGTCTATGCTGTAAGCCATATTTGCCAACGCAACTTCTGGATGAGTGAGTCTGAAATGATCCATCATTATAGATCCTCCTGTGGTATACTGAAAAAGAAGTTAAGAGCCTGTTTGCAATGGAGTAAAAAATCTGGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGATTCGCACCAGAGTTATTGCAATGTTATCCAATTCAGTTTGTGAAAGTAAATTAGTTTAAAGTTATTTGAAGCTAAAACTCTCACTTGCCTCGAAATTTTAGAAAAAAATTGATTGTATTGTTATATTTTATGTCATTTTTCGCG # Right flank : GCAACCGTCCTTCGGTCTTGGGGCAAAGTCGATAATGTTTCCGATGCGCTACAAAAGCAAATTTTCTATGGCAATCCCGATTGTGAGGAGGCTGTCCCACAGGCAGTGCGCAAGGATGCGGGGCAAGACGGGATGTACAGATAAGAGAGTGGCAGGAAGACGGCGGACGGCAAAGCGGCGGAATAGGGATGGGTTGAGACGAGGTTGTGAGACGGAGCTGGTGAAATGAATTCCTGCATGGATCAGGCTGTTGAGAAAGAAGTTTTGAGTAGGAAAATGGATATTTCCACCATCCTGAAAACTGCACCATTTCCCTAGACACGCCCATCCGGCAGGCGAAATCCGCAAACTCCACGATTTTTCCAGGCACGCCGATTCGGTAAGCGAAATCCTGCAGAAATACAGCAATTCGATATGGACGACTATTCCAGAAAGG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //