Array 1 206-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODV01000037.1 Pectobacterium atrosepticum strain HAI2-SCRI1043 C37_001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 205 28 100.0 32 ............................ CGGTGATGAGTGCCTGATTATCTTTGCCGATC 145 28 100.0 32 ............................ TGAACTAACACGCCATAAGCAATATCAAGCGT 85 28 100.0 32 ............................ ACAGATAATTGATAGAGAGACGTCAATTAATG 25 25 89.3 0 .........................--- | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : G # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 58-265 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODV01000008.1 Pectobacterium atrosepticum strain HAI2-SCRI1043 C08_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58 28 100.0 32 ............................ GCAGAGACTATCGATACGGTCTGGACGGATGC 118 28 100.0 32 ............................ TTAGGGTTGTAGAATCCCCTGAGCCATTGATT 178 28 100.0 32 ............................ GTTTGCAGGGTCAGACCACGACACCATCGCCT 238 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACAG # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 62-1154 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODV01000009.1 Pectobacterium atrosepticum strain HAI2-SCRI1043 C09_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 62 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 122 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 182 28 100.0 32 ............................ GCGAATCGTACAGTGGCCAGCGAGCGACGGTT 242 28 100.0 32 ............................ GCGAATCGTACAGTGGCCAGCGAGCGACGGTT 302 28 100.0 32 ............................ GTTTGCAGGGTCAGACCACGACACCATCGCCT 362 28 100.0 32 ............................ TGCACCTCACCGGTTGCCAGCTTACGCAGCGT 422 28 100.0 32 ............................ ATCGTTACACGGCACATAGATTGCGTCCGTAA 482 28 100.0 32 ............................ ATCGTTACACGGCACATAGATTGCGTCCGTAA 542 28 100.0 32 ............................ GTGTGGGCCAGCCGTACAGGTGATTACAAAGA 602 28 100.0 32 ............................ AGCGTAGACGCGAACTCATGCGCGAATTGCTC 662 28 100.0 48 ............................ TGTTGAGCTAACTGGTAGTTGCTGCGGTCTGGGTTCACTGCCGCACAT 738 28 96.4 32 .........A.................. AGTGTAGTGATATAGATTGGCCGGCTCATTCA 798 28 100.0 32 ............................ CGGTGATGAGTGCCTGATTATCTTTGCCGATC 858 28 100.0 32 ............................ ACAGATAATTGATAGAGAGACGTCAATTAATG 918 28 100.0 32 ............................ GTCACATCGTCGTCCCTTCCGAGGACTATGGA 978 28 96.4 1 ...........C................ T Deletion [1007] 1007 28 100.0 32 ............................ GTCACATCGTCGTCCCTTCCGAGGACTATGGA 1067 28 96.4 32 ...........C................ TCGATAAGGTCTGGGAGCGTATCCGAGTATCG 1127 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================ ================== 19 28 99.4 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACAG # Right flank : G # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 336565-335816 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODV01000007.1 Pectobacterium atrosepticum strain HAI2-SCRI1043 C07_001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 336564 28 100.0 32 ............................ AGCCTGAACCCGTCCGATTATCAAGATGGGAA 336504 28 100.0 32 ............................ AGCTCCGACCGACATGCGCTTAAAGGCGGCGA 336444 28 100.0 33 ............................ ATGCAGATATTGTAACTAAGCATCATATTGCAT 336383 28 100.0 32 ............................ TGTAGGCCATATAACAAATACTCAAAGATAAC 336323 28 92.9 32 .............T......T....... TTGCGATTGGCACCGTTAACCGCTCAGTGACC 336263 28 92.9 32 A............T.............. TCCAGTACTCAGGATCGTGTTGGTACGATAAA 336203 28 96.4 32 .............T.............. TCCAGTACTCAGGATCGTGTTGGTACGATAAA 336143 28 96.4 32 .............T.............. AGTTCTGACACTCGTTAAACGTCATAACGCGC 336083 28 100.0 32 ............................ GAAATATCCACCTGGACACTGTCCATAAAGAA 336023 28 100.0 32 ............................ GAAATATCCACCTGGACACTGTCCATAAAGAA 335963 28 96.4 32 .............T.............. ACGACGGATAGTCTCTGTCTGACGAACGCAAC 335903 28 96.4 32 .............T.............. GCCCTGAAAAAAATGGGTTGTGATGACCATGC 335843 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 13 28 96.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCTGCGTCAGCACGCTCTTCTTGCAGAAAAGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGCAAGCGAATAGCACGGTTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCAAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTACCACAGGGTTGGCACCCTTTTTTCATGGACGCTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAGAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAACG # Right flank : TTATCGAGATAAGTCTCTAGCACGACTCACCTCAAGGGTGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCCTGCCGTACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGAGCCAGAATAG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 346665-348193 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODV01000007.1 Pectobacterium atrosepticum strain HAI2-SCRI1043 C07_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 346665 28 100.0 32 ............................ TTAGGGTTGTAGAATCCCCTGAGCCATTGATT 346725 28 100.0 32 ............................ TGTGTCGGATCGGCGTCGGCGTTGCCGTCAGG 346785 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 346845 28 100.0 32 ............................ GTTTGCAGGGTCAGACCACGACACCATCGCCT 346905 28 100.0 32 ............................ ACCCGCAATTTGACAGACGAGCAACGCAAGCT 346965 28 100.0 32 ............................ AGCATCACGTCGTGGGTCAAATACTGCGACAG 347025 28 100.0 32 ............................ AGCATCACGTCGTGGGTCAAATACTGCGACAG 347085 28 100.0 32 ............................ CGATGGCGGAAGCGGTCAGGCTCAAGGACAAA 347145 28 100.0 32 ............................ TGCACCTCACCGGTTGCCAGCTTACGCAGCGT 347205 28 100.0 32 ............................ GTGTGGGCCAGCCGTACAGGTGATTACAAAGA 347265 28 100.0 32 ............................ GGAAAGTTGATCTACACCGACGAGCCTAACGC 347325 28 100.0 32 ............................ AGCGTAGACGCGAACTCATGCGCGAATTGCTC 347385 28 100.0 32 ............................ TGTTGAGCTAACTGGTAGTTGCTGCGGTCTGG 347445 28 96.4 32 ...........C................ GATCTACCAGCCTCAGACACATTAGCCCCCGC 347505 28 92.9 32 ..........AC................ TGGCACGGATACATCCACTTCACTGACGCGCC 347565 28 96.4 32 .........A.................. AGTGTAGTGATATAGATTGGCCGGCTCATTCA 347625 28 100.0 32 ............................ TGAACTAACACGCCATAAGCAATATCAAGCGT 347685 28 100.0 32 ............................ TGTCGCCATAACCACCTGTAATACAGGCTCGG 347745 28 100.0 32 ............................ ACAGATAATTGATAGAGAGACGTCAATTAATG 347805 28 100.0 32 ............................ GTCACATCGTCGTCCCTTCCGAGGACTATGGA 347865 28 96.4 32 ...........C................ GTATCCAGTGACCGACGAATCAGCGCTCGACA 347925 28 96.4 32 ...........C................ TGCGCATTGTGGACAAAATCGCGCGGCGTGTT 347985 28 96.4 32 ...........C................ TCGATAAGGTCTGGGAGCGTATCCGAGTATCG 348045 28 100.0 32 ............................ GTTTACGATTCTGCTCACGTCACTAATTTCAA 348105 28 96.4 33 .................T.......... CACGCGAGATCGCTGTTCAGGCCGAGGCAACCC 348166 28 85.7 0 .....................C..TTC. | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTGCCGGTTCCCAGCATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGACCACCGTTGACGAGAATACGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTTCCGTAATAGATAATAGCCATAACGCCAGCTAAATAAATCGCAGGCTAACTATTTGATAAGGAAAAATATAACTTTCAGAAAACTGATGAAAATCAGCCTATCACAGTTGCATGTGAAAGATGATGACCGCAAAAAATTTTACCCAAACGTAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATGGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : ACAGCACTCAGGCACTGCTGTCTGGTTATTATCGAGGTAGCACTGCGCCAGCGCTCAATGCGCTGTAGCTCTTAAATAACGTATTGTTGATGGCTTATTTTCGTAATATTTTCAAGTAACGGGTATCTTTGGGTGGGAATGGAAAATTGCAGATTGAATGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCACTTACAGGGAAATAGTTTGTTGACTTAAGTAAAATTCGAGGGAATGAGGCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //