Array 1 71497-69969 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNBP01000024.1 Streptomyces sp. CB02959 scaffold24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================== ================== 71496 30 90.0 72 .....T.......A...............A GGTAGTCAGCTGCGTGGTGGGCGGCGAATACGGAGGTGAACCGGCGTCGGTGTCGCGTACTTGGGAGCGGAT 71394 30 90.0 31 ...........T...T.............T CCGTGCTACAAGCGATGGACGAGGTGGTCAC 71333 30 96.7 31 .............................G TGAAGCGCAGCCCGTAGGGCGTGGTGTCGAC 71272 30 100.0 31 .............................. TGTATGGCGGCGCGGCAGCGGAGGGCGGCGG 71211 30 96.7 31 .............................T CGGCGTCATCGATCTTCCCGGACGCGGTGAA 71150 30 96.7 31 .............................T ATCTTGACACTTGCTTCGTGCGGACCTAACG 71089 30 93.3 31 ...........C.................G TGTGGGGGACACCGAAGTGCCCCGGCACGGA 71028 30 96.7 31 .............................T CGTCGGTCAGCGTCCGGCACACCTCGGTGAT 70967 30 96.7 31 .............................T CGGTCGTCAACACCCTGCGGCTGCGTCTGGA 70906 30 93.3 31 ............................AG AGGCGGCAGACGCTCTCGGGAGCAGCACGAT 70845 30 93.3 31 ........T....................A TCCCCGTCCTCGACCAGCAGGACCTCCTCAG 70784 30 96.7 31 .............................G GCCACCGGGTCGTTGTCGTCGCACCCGAGCA 70723 30 93.3 30 ........T....................G ACGCCCGGCGAAGAAGAAGCCGCCGCGGCG 70663 30 93.3 31 ........T..A.................. GACGGCGGGGCCGCTGACGCCCGAGGTGGAC 70602 30 86.7 31 ........T....AG..............A CGGACTGCCGGCGTGGCTCGCGGCAGCGGCC 70541 30 93.3 31 .C...........................A CGTTGCGGTGCCCCTCGTACGTCGTGATCGG 70480 30 100.0 31 .............................. CCGGCATCCGCTTCGGCAAGGGCCCCGAGGG 70419 30 86.7 31 .A..G........A...............A GCTGGGGGCCCTGTACGTCCTGGGAGAGGTA 70358 30 76.7 24 ...............C..TC..C.CC..C. CCCCGCGGGCGGACCGGCCGCGGC T [70343] Deletion [70305] 70303 30 93.3 31 ............T................G TCCCGGCTGCCGCCCCGGCGCCGGTGTCCAT 70242 30 100.0 31 .............................. CAATCACGATCACCCACGTCAGGGTTACGAG 70181 30 96.7 31 ........T..................... GGGAGTCGCACTCGAACTCCCTGGGCCCGGA 70120 30 93.3 31 .G...........................T CCACACAGACATGGTTAAGCCCCGCGAGGTG 70059 30 96.7 31 .............................G AGACGCCGTCGACCCCGACCTCCGGCCGGGA 69998 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================================================== ================== 25 30 94.0 32 GTCCACTCCGCGCGAGCGGAGGTGAACCGC # Left flank : AAGCCGCCCCCTCGACGCCCTCCTCGACGCCCTCAAACCCGGCCTGTCCATCCGCTACCGCTGCGCCGCCAGCCCCGTTCGCAAACCCGGCGCCACCACCCGTGCCCTGTACAACCTCCCCGCCGTCGTCCCCCTCACCGGCGCCCACGCCGACGAATGGTGGACCCGACAAGCCGACGCCGCCGGCCTCAAAGCCCTCACCCTCCACTCCCGCCCCCTCGACGCCGCCCAGGCCACCCGCCAGCCCGACCAGTCAGGCAGCCCGCAGCGCATACACCACGCCCGTACCCGCTTCGACGGATCCGCCACTATCACCGACCCCGACCTCCTCCGCCAGAAGATCACCGAAGGCATCGGCCGCGGCAAGGCGTACGGCTGCGGCCTCCTCACCATCGCCCCCGCAAGGACCACCACATGACACACCCCGCCGCCGCTCCACGCGCGGCGCACACCCCCAGAAAGAAAATGCAAAGTCCTCCTAGAATCGCAGGTCAGGAAGA # Right flank : CACAGGAACTCCAGCGCGAGCAGCGTACCGAGGTGCCCGCTCGACCACGGTCGATACGCCGCCCGCGGCCGCTGCCGCCTCCAGGGCAACGCGACTCGGCCAGGCCGACGTCGCCTCGCCACTCATGCCTGCCCCCACGGGGTGTAGCCGAGGTCCAGGTGCTCCAGACCCGACAGGCGCTGCACGGTCGCGACGAGTGCCCGGGTGAACAGGCGCTGCGCGGAGTGCTCGCCGTACCGCTCGATGTGGTCGAGGACGACCTGGTGGTCGGTGGCGGCGCGTGCCCGCCAGTCCAGGACCTGCTCGACGGTCAGGTCCTCGAGGACGAGCTCCTGCTCCTGGTCGTCGCCGTCAACCGGGTCAGGGGCGGCGAGCGAACGCGGCGCGGGCAGGATGACCGGCGCTGTAGGCCCGGCCGGGACGTCGTCGGCCGGCTGCGCAGCCGCGGCTTCGACACGGGCCTGAGCTGCGGCGGCTTGCTGCTCGCGGATCTGTGCCCA # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACTCCGCGCGAGCGGAGGTGAACCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79993-81358 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNBP01000024.1 Streptomyces sp. CB02959 scaffold24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 79993 30 96.7 31 .............................C GATCTCGGAGTCCGGTTCCCGTCCGGTGATC 80054 30 96.7 31 .............................T CAGAAACTAATAACTGGCAAGTCGCTGCGAA 80115 30 100.0 31 .............................. GGTTGACCGGCCAGCCCGAGCGCGTTCTCAG 80176 30 100.0 31 .............................. GTCCAGCCGACCCCCTGAAGGACCGCTCCGA 80237 30 96.7 31 .............................A TACCTGGAGTGCTATCCATCCTCAGTTGTCA 80298 30 100.0 31 .............................. TGGGGGAGGGGGCGTGCCTCATCACTGAAGG 80359 30 100.0 31 .............................. CACCAGCAAGAGCAGGAGGCTCACGAACCGA 80420 30 96.7 31 .............................A AGTCGGCCATGGCCAGGCCGAGCCCTTGGGA 80481 30 96.7 31 .............................A TCCCATTGACCCGAGCGCCAGCAGCGTCAGC 80542 30 96.7 31 .............................A CGGTGTAGTGGTCGGTGTACTCGAAGACGCC 80603 30 96.7 31 .............................A TCGAGCGGGCAATCCCGCCATACATGCAGGT 80664 30 100.0 25 .............................. CGGAGCAGGCGGAGGCGGAGAAGGG 80719 30 100.0 31 .............................. GCTGGTGTCCGGGGGGATGTTGCGTTGCTGG 80780 30 96.7 31 .............................C CATTTCACCCCGACCGGTAGGGGTGCCATCT 80841 30 96.7 31 .............................C GGTCGGGCCAGAGTGCTTCACCTGGCCGGCG 80902 30 96.7 31 .............................C CGCCCATGCCGGTCCCTTCGTGAAAGAACCA 80963 30 100.0 31 .............................. AGGACGCCACCAAGGAGGTCGCCCGAGCTGT 81024 30 96.7 31 .............................C CCAACGATGGATCACGGGCGAGGGTTGGGGC 81085 30 96.7 31 .............................A TCGCGGCCGTGCGGGGCTTGAGCTTCTTGCC 81146 30 100.0 31 .............................. CTCAGCTCAGGCTCGCCTGCGGCGGGTTGCC 81207 30 96.7 31 .............A................ TGGCCTATGCCCAAGCCCAGGATTCGTCAGC 81268 30 96.7 31 .............................T CGGCGCCGGTGCGCACGAGATACTCGTAGTC 81329 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 23 30 97.8 31 GTCCTCTCCGTGCGAGCGGAGGTGAACCGG # Left flank : TCGCTCCGCACCGCAGCGAACGCCTCCGGTACCTGCGCCTGGAACGGGGGCGTGACCTTCCCCAGGTCATGCAGCCCTGCCCAGAACGCCAGCACCCGCCGCGCACAGGCCACCCTCATCCCCAGCGCCCGCGCGATCCTCTCGCGCACCTGATCACTGAGCAGGGCATCCCACAGGGCACCGAACACCCCTGCCGTGTCCAGCAAATGGCAGATCACCGGGTACGGGCGCGGCAGGCCACGCTCCTTACCCCATAACCGGGCGTCGACCGGGGGGTGCCCCGGCGGGACGGTCTCACGCTTCATCATGACGCCAACGGATAACACGCCCCACTGACAATGCACCCCCACCTGCGCAAAGTCCACAACGGAGCAAGCGCAAGACCCTAGACTCCTGGCCATGGGGCCTCAGTTGAAGCAATGGATCGCCGATCCATTGCGAGCTCATCCGCGTACCGTAAAGGACTTGCAAAGCGCCTGGAGAGAGCCAGGTCAGCAAGG # Right flank : AACGCCGAAGGCCGAGATCAGAGTGCTGATGCGGTTGGTCACCTGGATATCGTCGATGACGACCTCGGGCGGTGGGAGTGGTCCAAACGAATCGGCCTTGACGAGGCCTGGCACGTCCTCCCCGAGCAGGTTCACCTACTGCAGACCTCCCGCTGGGCCGATGACGCCGAAGGCGCGACGGATCTGGAGGTGCTGCTCGGAATCCTGACCACTGCCGCGGAGCGGCGTCTGTCCCACGAGAGGCAGTCATGAACGAACGCGACGTCCTGCTCAACGAGCTCGCGCAAGGGCTGCGCCCGATGTCCGAGGGCATCGCATGGTTCGACGGCCTCAGCGAGGAAGAGCAGTCCGAGGTGCTGCGGTTCCTGCGCCATCACTGCGTCCAGGCCCGCGCCGTCGCCGCGGACGCACCGGAGAGCATCCGCCGTGCCGGGCTGCGCCCGACGCATACGCCCGCGGTGCTGATCTCTCAAGGCCGGATCGACGAGCAACTGGGAAAG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGTGCGAGCGGAGGTGAACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 88469-88681 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNBP01000024.1 Streptomyces sp. CB02959 scaffold24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 88469 30 83.3 31 T..AC.....CT.................. CGGCTGGTGGTGGATCGCGACCGCTGCCAAT 88530 30 100.0 31 .............................. TGAAGGAGATGGCGTCGTTGCCGATCTCGAT 88591 30 96.7 31 .............................A GCGCTCCGGCCGGGCCCGTGGTGAACGCCGC 88652 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 4 30 94.2 31 GTCCTCTCCGTGCGAGCGGAGGTGAACCGG # Left flank : CGAGCAGCCGATCTGGGGCTGAATCACCCGTCGGCCCCCTTTACGGCGCGCGGGAACCCGGCAAGGCGTTTCATAGATGGACGCGAACGTGGCGCCCACCCCGGAGATCCGTGGTGGGCGCCACAGCCGTCCCATCATGCTGCCCAGTGGCTAAGGATGGCCAGCTGCTGGAAGGGTTGCCAGAGGTCCGTCAGCGGGTGAGCTGCTCCAGGGCGGCCAGGGCTCGGGGGGCGTCGGCGTGGGGGACGAAGAGGTGGTCGTGGTGGAAGCCGGCGACCACGTTGCAGCTGAGCCCGGCCTGGGCCAGGGCTTCGGCGAAGACAGCTGTGAGGCCGACCGCTTCGAGCGAGGAGTGCACGCGCAGGGTGATCCAGCTGGCGACGTAGTCGTAGGTCAGGCCAGCCTGGTCGGCGTCCTGCCTGTCCAGGACGAGGGTCAGTCCCTCCTCCTCGGCGCGGAGTGGACGGGGGCGGTGTGGGGTGGGGAGTGGGGGGCTCCGG # Right flank : CGTGCAGAGCAATGCTTAGGACTTGTGGATCAGTCCCGGGGCGGGACGCAGAAGGCGTACCTTCCCGATGATCCCGTGATGTCCGAGTAGGCCCGCGTTCGCAGCGCGGGTCGGGAAGGCACGCCCGTGCTCAGCGTAGTGACCGACGACGGCTCCACCCAGTCCGGCTCCCTGATCGACGAGATCGTGCGCGAGGGTGCCCGCCGGATGCTTGCCGCCGCACTGGAGGCGGAAGTCAACCAGTACATAGCCGAGTTGGCCGCCGAGACAGATCAGGTCGGCCATCGCCTGGTTGTCCGCAACGGCCACCACCGGCCCCGGACCGTGGCTACCGCGGCCGGCCCGGTCGAGGTGCGGGCTCCGCGGGTGAACGACCGTCGCATCGACGACGCGACCGGCGAGCGCAAGCGGTTCTCCTCGAAGATCATGGCGCCCTGGTGCCGCAAGTCGCCGAAGATCTCCGAGGTGCTGCCGCTGCTCTACCTGCACGGCCTGTCGTC # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGTGCGAGCGGAGGTGAACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 185136-184984 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNBP01000008.1 Streptomyces sp. CB02959 scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 185135 30 96.7 31 .............................T GCACGGGCGGGTCCGGGCGGCCGGCCTGTAG 185074 30 100.0 31 .............................. ATGCGCCCGAAGAGCGCGATGTCGACCGAGT 185013 30 93.3 0 .....................T.......G | ========== ====== ====== ====== ============================== =============================== ================== 3 30 96.7 32 GTGGTCCCCGCATCCGCGGGGGTGGTCCCC # Left flank : GCACCATCAACCGGCTGCAAGGTGGGTATCGGCAGGACAAACCAGCAGCAGTGGCTGCGGTGGCACTCTTGCGCCGTGAAGCCGGGCAGGACGCTCATAAATACCACCCCGGCCACTTCACCGCAGGCGACCCACCCAACCAGGCCGTCACGGCAGCCGCCCAGTGCATGTACGGGATCGCCCACGCCGTAGTGACAGCACTGGGCTGCGCCCCCGAGCTCGGCTTCGTGCACGCAGGAAACGAACGCTCCTTCGTCCTGGATATCGCCGACCTCCACAAGACGGACATCGGCATCCCCGCCGCCTTCGACGCATCGGCCGAAGGCGCGGAAGACGTCGCCTCCCAAGCAAAGCGGCCATGAGGCGGCGCTTCGGGAATCACTAAGGGAAGTCCTATGCATGGTTCTGCCGGATCTATTCGCATCGATAGCGAAGTGCCGCTTTCTCTGGAAGTGAGCAAAATCCACTCGTTGGCCGTATGAAGCAGCAGGTCGCGGCCT # Right flank : GGCCGAGGTCGCCCGACTCATGCAGGCGCGGGCGAAGGAGCTGGGCATCCCTTCTGGCGACCAACCGCACCACCGCGTGGAAGTGGAAGCAGGGCCAGGAACCGGACGCCGACGCTCAGCGCGTCCTTGCCGACCTGCTGTGCGTTCCGCACGAACGGGCCCAGACGGAAGGATGGCCGCGCCGGCTTCCCGTATGGGAGGTCACCGGGCTTACTGTTCCCTGGACAGAGGCCGCTACCGTCGAGGCACTGGCTGACCTGGTGGGGAGTGGCCGCATGGACCGTCGGGGTTTTCTCACCATCACCGGCCCCGCCCTGACGGGGCTTGCAGCGAGCTGGGCCGAGGCGCCCTCCGCCTTCGCATCCGCCCTCAACGGAGATCGCAGTACGGAGGTCGTTGGCGTAAGCACCGGCAGCGGGCGGAAACTGCGGTCCTGCAGCTGCGACCGCAGCCCGTCGAGAGAATCCCAGACGCCCTGCCCGGCCGCGATGGACCGGGCC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCATCCGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49694-45533 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNBP01000030.1 Streptomyces sp. CB02959 scaffold30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 49693 37 100.0 37 ..................................... ATCTCGGTGGCGCGGGCTCGGCCTCCGTCGTAGGAAA 49619 37 100.0 37 ..................................... CGCATTTCGGGGAACACCCCGTCGTCGAGCACCAGGT 49545 37 100.0 37 ..................................... CCCTAGAGGGGAAACGGGCTGATGAGGGAGGTGAAGT 49471 37 100.0 38 ..................................... ATCGGATACGCCCCCGACAGCGCCCACGTGACCGGCGT 49396 37 100.0 37 ..................................... CTCGGCAGTGACCGCCTCGCGCAGGCGAACGCCGCCG 49322 37 100.0 36 ..................................... GATGTCATGTATGGGGGCAGCGCGGGCGGAGGGAAG 49249 37 100.0 36 ..................................... CTCCGGCTCCGCCGGTGGCGACCGCTGCGGGTGGGG 49176 37 97.3 37 .....A............................... GTCGTGGCGGCAGAAGAAGGCGGCGCAAAACATGCCG 49102 37 100.0 36 ..................................... CACACCGGTTCGGAGATCTACGCAGAGTCGCGGCGG 49029 37 100.0 36 ..................................... GCTTGGTGTGCTCGTCGAGAACGGACCACCGTCCGG 48956 37 100.0 35 ..................................... GCGCGCCGGTGCGGTGTGAGGGACAGCAGCCTGGT 48884 37 100.0 37 ..................................... CCCTTGACCCCGAGGAACAGAAAGACGGTGGCCGCGA 48810 37 100.0 37 ..................................... GATGCCGACGAGAGCGAGCAGCTTTGGCGGTGGTGGG 48736 37 100.0 37 ..................................... TCACCCACGCTAGCCATGTCAAGCAAGCGCACCCGAA 48662 37 100.0 37 ..................................... ACCGCTTCCGCGACCGGACGAAGCGGCCTCTGCCCGA 48588 37 100.0 36 ..................................... CCCCAGCAGTGTGTGTACGTAGCATGGCCTGCACAG 48515 37 100.0 35 ..................................... AACAGTGCGCCCCCACGATCTCGTGCCGTCGATGT 48443 37 100.0 36 ..................................... AACCTCCGGCACCCCCAGCGCCCTCGGTGCCCCCTA 48370 37 100.0 37 ..................................... TGCCACGACGCGTCGAGGGGCACCCGTTTGACGACGG 48296 37 100.0 38 ..................................... GGCTTCGTGGAGGCGGCGACGGACTCGTGCCTCGTCGC 48221 37 100.0 36 ..................................... GATGCGGGGGTGGGTCCCGTGTACCTGAAGGCGATC 48148 37 97.3 37 ...............................T..... GTGATGCCGGCCATCGCGGTGGGGTGGACGGTGGCGG 48074 36 97.3 37 ...............-..................... CCGGAAAGGAGAAGACGATGCGCCCCACACCCCGAAG 48001 37 100.0 35 ..................................... GGCGTCGCCGTGACCGTGATCGGCGGCACCTGGGG 47929 37 100.0 35 ..................................... CACCACTATCCGCGCGGCGCCTCGCATGATGGGGT 47857 37 100.0 35 ..................................... CGGCCGGAGGTCCCGGCAGCGGCCGTGCCGGTCGG 47785 37 100.0 37 ..................................... CTTTACCCCAGTGAGGGATAGGGGCTCACACCCAGTT 47711 37 100.0 35 ..................................... CTCCTGCGCTACCCAACCAACGGCGACGACGTCGG 47639 37 100.0 36 ..................................... TGCCCATGAGGCGTCGTGGTGGCGGTGGGCGACGGT 47566 37 100.0 38 ..................................... AGCAGGGGGTGTTCGTCCGGGACCTCGCACTCCACCAC 47491 37 100.0 37 ..................................... GGCGCGAGCGTGACCGTGATCGGCGGCACCTGGGGCG 47417 37 100.0 35 ..................................... TTCCGCGGCCACCGCGTCCGGCCACCGGATGGCGT 47345 37 100.0 36 ..................................... GTGAAGAAGCCGACGCCGCAGCCGCGGCGGTCGGTG 47272 37 100.0 38 ..................................... AGGACCGCTCCGATGCCCTTGAAGAAGCCGACGATGGG C [47256] 47196 37 100.0 36 ..................................... GTGAGCAGGTTGGAGCCGGTGTCGACGATGCTCGTC 47123 37 100.0 35 ..................................... CTGCGTCCCACCGCCATGGGGGAGCAGGCCCTGTA 47051 37 100.0 37 ..................................... TCGCTCGGCAGATGCGGCAGCTGCGGCCGCAGGCGAC C [47035] 46976 36 97.3 36 ...............-..................... CCGCAGGTCAGACCGGACAACAACACGAACAACAAC 46904 37 100.0 37 ..................................... CTTCGAGGGGGAGGGGATGATGAGGTGGGGGAGCCAG 46830 37 97.3 36 .......C............................. TCAAGGACACCGTCTGGTGGGGGCCCAGCGGTGCCC 46757 37 100.0 37 ..................................... ACGACGAGAAGGCGTTCGGCTCCGGGTGGGTCGCACA C [46741] 46682 37 91.9 38 .........A....................C.....T GACCTGCACAATCGACGGGTAGGGCTTGTCGAAGTCGA CT,T [46666,46671] 46604 37 89.2 36 .........A...T.........T............A GGCGATTACGTCAAGGGCAGGTGAGGGTGGGACCGC 46531 36 83.8 37 ...AT........T..A..-..G.............. CGCTTGTTGCCGTTATGGCAGACCTGCGGAGGGAGTT 46458 37 89.2 37 .......G.....T....T.T................ AAGCAGGCGCACCAGGAGCCGGAGGCAGGCCCCAGGC G [46450] 46383 37 91.9 36 ...C......G...T...................... ACCGGAGTGGATCCGTACACCGCTCCCGCGCACTTC 46310 37 97.3 36 .............T....................... TTGATCTCCATGAGCGTCCGCACCTGGGACTCGCGC 46237 37 97.3 37 ......................G.............. CGCGGAGCCCTCGCCAACGCCGTGTGGCGCCACGCCG CC [46220] 46161 37 97.3 37 ......................G.............. TTGACCAGGAACTGCTCGAAACGCAGCACCGGCATGG CC [46144] 46085 36 89.2 36 ...............-....T.G.T............ GTCTCCGCGAGATGACCGGGCGCACCCAGGAGCAGC 46013 37 97.3 37 ......................G.............. CGCCGTAGCCGGTGGGACATGGCGGAGGGGCCCGGGA CC [45996] 45937 36 94.6 38 ...................-..G.............. GACCCCCGCGCCACCACCGTCCTCGACTACGACCTCAG 45863 37 97.3 37 ......................G.............. GCATCTTCGACACCGACCCGAACGCGAAGCCCAAGAA GCC [45845] 45786 37 94.6 36 ...............T......G.............. CATCCGGAATCGGCCTCTATCTGGGCCGCGATGATG 45713 36 91.9 36 ...............-..........G.........A GACTTCGGGGCGCCGACCAGCGGGCGGCCGCTGACG 45641 37 86.5 36 ........G.T..T.T...................T. TGGATGGCCTCGCACGGGGACTGGCTGCCCGTCAAC 45568 36 81.1 0 ........A.T....-..A.......GA.......G. | ========== ====== ====== ====== ===================================== ====================================== ================== 57 37 97.5 36 GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC # Left flank : CATCCAGGCGCGCCTGCTTGCCCGGCATCTACGAGGCGACTTGCCTGGATACCTCCCGTGGACGGCGGCCTAGTGGACCTGCTGCTGACCTACGATGTTGATACCACCACGCCGGAAGGCCGCCGTCGCCTCCGCCGCGTGGCCAAACTCTGCGAAGGCCATGGCATTCGCGTCCAGAAATCCGTGTTCGAAATCGTCTCCGACGACAAGAACCTGCTGATGCTCCTGGGCAAGCTCGACAGCATCGTCAACGCGGACTGTGACAGTATCCGTATCTACCGTCTGCCCCATGAGGGATTCGAAAGCGTCCAGACCCTCGGTATCGCCGAAGCGCAGCGACACCGAGACGATCTCGTCCTGTGATGTCACTGCTTCGGAACCACAAGCACACACACGACACGCGGATCACGCCGAAGCAGAATGTCCTTTCTGTGTATCTCTGATCCCGCCTGCCGGGTAACTCTCTGGCTCGAGTGTCGCGTTTCCGCTGCTCAGCCAGT # Right flank : ACGAGGAGACTGCTCGTCTACGGACTGCACCACTCCACAGTGGCGGTCGCCCTCCGCCACGAATCGCAACAGCCTTCAGCCCTTGGAGCTAAGAAGGCACTGAATCCATCTTGCCCCAACGCTCTTTGACCTGCGTTGGGACGTATGTGGGATCACCCGATCCCCTGGGTTCTGTGGGGCGAGAGCGCCCCCCGCCGGGGCGTAGGTAGCGGCTCACAAGATCTTCACAGTTCCGAGCAGTCAAATGGAAACAATTCGATCACCGTCGGCTGTTGCAGCACCCGTAGCCGAGGAGGGGACGGTGACGGGCCTGAAGCTGTTCAACGCAAACGGCGGCGTGACCGAGGTCACGCCGCGTCTTGCTGCTGTCGAAGCGGATGTGCAGTGCCTCGTCGAGGCGAACATGGAGACGATGCTGGGGGTGCGGTTCCTGGCGAGCGAGTACGTCATCGACTGCGCCGATGGCGGGCGGATCGACTCGCTGGGAATCGACGAGAACA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.80,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [61-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //