Array 1 133211-132842 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAIIP010000001.1 Streptococcus pyogenes strain K10474, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 133210 36 100.0 30 .................................... AAAAAAATACAAATCATAGATATAGAGATA 133144 36 100.0 30 .................................... CAATTAAGAGCGGATAAGAAAGGTACCCAC 133078 36 100.0 30 .................................... TACGCAGCTGAATACTTACAGAAAGATCTA 133012 36 100.0 30 .................................... ACTTATTGCAGATGACTTTAACATCAATAG 132946 36 100.0 30 .................................... CTTGATGTCGCAGAGATTAATATTAGGCGT 132880 36 97.2 0 ................................T... | CT,T [132845,132851] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTAGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : ATTGCCAATGGTAACTTGAGAGAGAGGGTTAATACCAGCAGTCGGATACCTTCCTATTCTTTTTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCAAGAGGGTTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGACCTTGGTGATAAACCTTTTGATCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTGTTTTTAACATGGTGCATGGGTCTCATTCAAGAGACTCTGCTAGGCGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 106638-106143 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAIIP010000004.1 Streptococcus pyogenes strain K10474, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 106637 33 97.0 33 A................................ TAACTCATCTAGTGGCATTATCATATTAAATCT 106571 33 100.0 32 ................................. TCCTCTCATCATATCTTTTAAATCTTTAACAT 106506 33 100.0 32 ................................. TTGATAATCAACTCAGTCAGATTACTTTCTGG 106441 33 100.0 34 ................................. AAGTCAGCATATTCAAAGGCATACTTGATATATA 106374 33 100.0 34 ................................. TGTAATTTTGATTTGTTCCATATTTCTCACCTTT 106307 33 97.0 34 T................................ AAGTAATAGCCTCTACGGATATAGTATCGCTTAC 106240 33 100.0 32 ................................. TCCTCTCATCATATCTTTTAAATCTTTAACAT 106175 33 97.0 0 ................................G | ========== ====== ====== ====== ================================= ================================== ================== 8 33 98.9 33 CGTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : TAAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAAAACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGC # Right flank : ATGAACCCGACCTCATTAAAAGAGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGTCTGTCTTGCTTTAGATACAATAAGGATAACCTTAGAGAGGAGTTGCTTATGACCTTATCAATCGTCTTAATCGCTTCCGTTTTTGCGGCAGGCTTGTTATCATTTTTCTCTCCGTGTATCTTCCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAGGACAATGACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAGACCTTAGCCTTCATTTTTGGGTTATCCACTATCTTTGTGATTTTAGGTTATGGGGCTGGTTTTTTGGGAAATATCCTTTATGCGGTATGGTTTCGGTCCTTCCTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTACA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //