Array 1 55117-56802 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFELK010000021.1 Lacticaseibacillus paracasei strain YT170 Scaffold21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 55117 36 100.0 30 .................................... GTTCTGGAATTGGTGCCCTCACATCAGGCT 55183 36 100.0 30 .................................... CAGATGAAGCTGATTGAGATTGTCCCTGAT 55249 36 100.0 30 .................................... TCTCATTGACTGCTTGATCCTGATCAGTCG 55315 36 100.0 30 .................................... TCTCATTGACTGCTTGTTCCTGATCAGTCG 55381 36 100.0 30 .................................... CACGTGATGGAACGTAACCGTGATTCTTTG 55447 36 100.0 30 .................................... CAACCTTACAGAAGTTCTTCAAGAGCGGTT 55513 36 100.0 30 .................................... GGACGAGCAAATCTAACCGCTTCGGGCCAA 55579 36 100.0 30 .................................... CCGAAGGATAAGCCAATATTTGTACCAGAC 55645 36 100.0 30 .................................... GACTTCGAATGCTGAAGAACTAGCTGATCA 55711 36 100.0 30 .................................... GACTTCGAATGCTGAAGAACTAGCTGATCA 55777 36 100.0 30 .................................... GGGGCACCTCGATATACGGGTACCCCATCT 55843 36 100.0 30 .................................... CGAATTTAAGACGATGAAACTGCCGTATGG 55909 36 100.0 30 .................................... AGAGTTTATTCAGCATGATAGTACCAAATT 55975 36 100.0 30 .................................... TCAACTAGCCTCTTCGAAAGTTAAAGGAGG 56041 36 100.0 30 .................................... AGAGTTTATTCAGCATGATAGTACCAAATT 56107 36 100.0 30 .................................... TCAAATAGCCTCTTCGAAAGTTAAAGGAGG 56173 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 56239 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 56305 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 56371 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 56437 36 100.0 30 .................................... GGACGAGCAAATCTAACCGCTTCGGGCCAA 56503 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 56569 36 100.0 30 .................................... AACAATTGAAGCGGTGGAAGCTATAGCCGC 56635 36 100.0 30 .................................... ACGTCGCCGCGAATTTTCCGCATTACCGTA 56701 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 56767 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-1487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFELK010000014.1 Lacticaseibacillus paracasei strain YT170 Scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 35 97.2 30 -................................... CTAACCACTGGACTGGCTGGAGGGGTCGCC 66 36 100.0 30 .................................... CATCGTACCCTCACAAAAGCTAACGCCGGC 132 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 198 36 100.0 30 .................................... TCTAAAAGGTCTTGTGTGGCAATAGCGTTT 264 36 97.2 30 ......................T............. TCAATATAACTCGCATCATAATCAAGATTA 330 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 396 36 100.0 30 .................................... TCTTCAAGGTCTTGTGTGGCAATAGCGTTT 462 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGTTTA 528 36 97.2 30 ...........................C........ ATCTCACTGATGTTATCGGCGATTTACGAG 594 36 97.2 30 ..............................T..... TCTTCAAGGTCTTGTGTGGCAATAGCGTAT 660 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGATTA 726 36 100.0 30 .................................... ATCTCACTGATGTTATCGGCGATTTACGAG 792 36 100.0 30 .................................... CTAACCTTGGCTGTGACTACTGGTGGCGTC 858 36 94.4 30 .........T....................T..... ATCTCACTGATGTTATCGGCGATTTACGAG 924 36 100.0 30 .................................... CTAACCTTGGCTGTGAATACTGGAGGCGTC 990 36 100.0 30 .................................... GTAAAACCATCATTCGTCTTGGAGTCAATC 1056 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 1122 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 1188 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 1254 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 1320 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 1386 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 1452 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 98.4 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : | # Right flank : CAAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 504-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFELK010000096.1 Lacticaseibacillus paracasei strain YT170 Scaffold112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 503 36 100.0 30 .................................... TTGAGTTCTGATTGTTAGTTGTATCTTGGT 437 36 100.0 30 .................................... CTTCATCTAATGATGAATTAACTAACAAGT 371 36 100.0 30 .................................... GCAATTTAATTTATAACCCAAGTTTATCAC 305 36 100.0 30 .................................... GAGTTTTAAGGTGATCAGAATGTATCGAGA 239 36 100.0 30 .................................... AATTCTTGACCCCATGATTGAGACGTATCT 173 36 100.0 30 .................................... TTCGTTGATGAGATGATCGAGCATAAACAA 107 36 100.0 30 .................................... CAGTGCCGGGGGTCCAACCATAGCCTGTGT 41 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : CGCG # Right flank : CAACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //