Array 1 36009-38856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQAJ010000028.1 Shewanella algae strain LZ2015256 Scaffold28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36009 28 100.0 32 ............................ AACATAAAGGGCTGAAAGAACCTCTTGTCTAC 36069 28 96.4 32 .....................G...... GCATGGATAGGCTCACAATCCCGTTTCTTTCC 36129 28 100.0 32 ............................ TTGATAAAGACGGTCAAACTGATTGGATTGGC 36189 28 100.0 32 ............................ TCGCTTTGAATGATGCGCAGGTCTGAGCCAAG 36249 28 100.0 32 ............................ CCCAGTGTGGCGGCGCTTTGCCTGCCGTGGTG 36309 28 100.0 32 ............................ GTCATTAGTCATAGACACTGAAACACCGTCAT 36369 28 100.0 32 ............................ ATTCCCCTGGCCTGGAACATATACTGCGCCAT 36429 28 100.0 32 ............................ GTGCTAGGTATTGTAGACATGTTTACCTCCGG 36489 28 100.0 32 ............................ AAATTCAGTGATTTTGTCAGTATATTGTTTGA 36549 28 100.0 32 ............................ ACTTGGTTTAACTCTCGGAACTGGAATGACAA 36609 28 100.0 32 ............................ TGATAGACAACTACATGAGAGATGCGGTCAAA 36669 28 100.0 32 ............................ TGCAACAGTGCTTGTTGAGTACTTTGACGGCC 36729 28 100.0 32 ............................ TGCGGTTACGTTTGAAAAGCTGGGAAGCTTGA 36789 28 100.0 32 ............................ ACTGCCAGACGGCGGGTTAACCGCACAGGACG 36849 28 100.0 32 ............................ TTATAGCCAAAGCGCTGCCAGTCGAGCTCCTT 36909 28 100.0 32 ............................ CTGTGGCTTGATCTGGCCAGCAACCCCTCTTT 36969 28 100.0 32 ............................ ATTGAGCCTAACCTCTACCGAAACGCCTTGCT 37029 28 100.0 32 ............................ TGATATACAGTTCACTCGCAAGCCAGTAAATC 37089 28 100.0 32 ............................ GACCACCGGAACCTCTTTGACCTTTCGATCAT 37149 28 100.0 32 ............................ TTGCGTGAATCCTTGGCGAAACGCTTGGTGCC 37209 28 100.0 32 ............................ AGAAGGGCGGTATTTAAACCAGCGTGTAGACA 37269 28 100.0 32 ............................ AGCAGCATCTATACCATTTAACGCCTTCTCAA 37329 28 100.0 32 ............................ AGAAGAAAAGGAGGTGTTTGATATGATTAAGT 37389 28 100.0 32 ............................ TGTATGAGTTATTGCGACTTTGCGCCTCTTCA 37449 28 100.0 32 ............................ ATATAAAAAGACTGCCTTGTTGCGGTCTTTTT 37509 28 100.0 32 ............................ CCTCACGCGAGGGGTTTATTCTTTATGTGCTA 37569 28 100.0 32 ............................ TTGCCAGTGACAGTGATTAATGCAGTAATCAA 37629 28 100.0 32 ............................ CACTGGAGTGATTTCAAGCCGAAACAGCCGCA 37689 28 100.0 32 ............................ CTGGGCTACTGCTAACCGCCGGGAAAGTATCT 37749 28 100.0 32 ............................ TTTATCGCCTATCACATAACTTCCGCAGGGCA 37809 28 100.0 32 ............................ AGTCACGTACATGCTGAATTGCATTTGCAAGA 37869 28 100.0 32 ............................ CTACACTGTTGAGGCGTTAACCACGCCGTCCA 37929 28 100.0 32 ............................ ACATGGTTGAGAACGCCGAGTATTACATCACT 37989 28 100.0 32 ............................ TCTATGAGTTAGCTTGTAAAGAGTGGGAGGAG 38049 28 100.0 32 ............................ AGTCAGGAACCCCTACAGGCCGGGCTTCGAGA 38109 28 96.4 32 ....A....................... TGGATGCGTTCGGTGACTATGGCGCCATTGGG 38169 28 96.4 32 ....A....................... ACTCACAATGACTGTATTTGTTAAAGATCGAC 38229 28 96.4 32 ....A....................... TGGCAGCGTTCAAGCGATTGGAGAACCGCTGA 38289 28 96.4 32 ....A....................... AGCAAGGGTTTGAGTACGCTTTTGAACTGCGC 38349 28 96.4 32 ....A....................... TGAGTATCGACAATCAGCATGTTGCTGATATC 38409 28 96.4 32 ....A....................... GTAGATCTCCCCCAGGAACACTGCAGCAGAAA 38469 28 96.4 32 ....A....................... TCTTCGCGCAGTTTGGTTTCATCAACGCTTGG 38529 28 96.4 32 ....A....................... ATTAGAAGAACCTCATTACCATACGAGTGACA 38589 28 96.4 32 ....A....................... ACCGAAGAGTATCAAAATCAACACCAGACCGG 38649 28 96.4 32 ....A....................... TCACGAACGGTATTAATTGCAGCATAAAGCGA 38709 28 96.4 32 ....A....................... ATTTTGGAGCCAAGCCATGGAACCAGACAGCA 38769 28 85.7 32 ....A........T..AT.......... AGCGAGGGATTTTAAATCCCTTTTTCAATACA 38829 28 89.3 0 ....A.......T........G...... | ========== ====== ====== ====== ============================ ================================ ================== 48 28 98.6 32 GTTCCCTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCGGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCACCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : AGGTTTTCTGGTGAATTACCCTTGAACCTTGCCGTGCTCCCTCCACAACGGGGATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCAGTGTAGCTAACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //