Array 1 3578-2154 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFEU01000167.1 Klebsiella pneumoniae strain TUM14687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3577 28 96.6 32 .....-....................... TCCGGATGATGACATTTCGGGTGATAATCATA 3517 28 96.6 33 .....-....................... GGGGCCAGCTCCCGGACGAGAAATGTGACGCCC 3456 28 96.6 32 .....-....................... ATTCCGTTCATAATTTTGTAGCTGCCCGCTAT 3396 29 100.0 32 ............................. TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG 3335 29 100.0 32 ............................. GCAGCGGCCTGACGATGATCGATATGAACGGC 3274 29 93.1 32 .............A...A........... TGAAATTGACGAGTGGATCAATCAGCGTATTG 3213 28 89.7 32 ..........-.TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 3153 29 93.1 32 ............TG............... TAATTTAGGAAATGAATTCTAAAATTGAATCT 3092 28 93.1 32 ..........-..A............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 3032 29 100.0 32 ............................. TAAGCTGATCGTTGCCGTAATGCGAAGCGGGA 2971 29 96.6 32 ...............T............. TGACTTTTGATGAGATTTTGTCGATAAAAATT 2910 29 89.7 32 .............G.A............T TCGATGGCAACCACCAGGAACAATAGAACCCT 2849 29 86.2 32 .A......T...TC............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 2788 29 93.1 32 ............TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 2727 28 93.1 32 .....-.......A............... GCCATGCAACGTCTGAACGTCCGAAACATCCC 2667 29 96.6 32 .............A............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 2606 29 100.0 32 ............................. TCGAAGGCAACCACCAGGAACAATAAAACCCC 2545 29 89.7 32 .A..........TG............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 2484 28 89.7 31 ..........-..G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 2425 29 93.1 32 .............A............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 2364 29 93.1 32 ............TC............... TTACGCATTGTGATCAGGATTCGCTTCAGACG 2303 29 93.1 32 ............TA............... TCGCCCAGTCCAAAGGGGATGATGCAGGATTG 2242 29 100.0 32 ............................. GGCATGAGCGCGAACCACTGCGAGAGTGTGGT 2181 28 86.2 0 ..........A..A.........-....A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 94.1 32 GTATTCCCCCCGCTTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTACGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTACATTAATCCGCTTTGCAGCCGAGCCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTGAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGTGCTATTTATTATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGCTAGCGTTAAAGGAACATTTAGCCGTGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTATTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACATGATCGGCTTTTCCGTCACATTCATTCAGCTCAGCACCAAAATCACCGCAAACTTCACCTGCATACTGATTTACTTTTTCCAGATGTAACTCACCGAAAAC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCTTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13146-15308 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFEU01000061.1 Klebsiella pneumoniae strain TUM14687, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13146 29 100.0 32 ............................. TTTACGGAATTGCTTAGGTCGCGAGAATGTCG 13207 29 100.0 32 ............................. TAGTCATTTGCCGGTGACGGGAACCCCATAGC 13268 29 96.6 32 ................T............ ATTAAATAATTCGTTTACGTCCATGACGAGAT 13329 29 100.0 32 ............................. GTAATCCTGATATTGGCGTATCAATGGTCACG 13390 29 100.0 32 ............................. TAACCTCGTTTATGTGCGCGTTTTATAGTTGC 13451 29 100.0 32 ............................. TGCGGGCCACCAGGGTTGCAGGGTATCAATGG 13512 29 100.0 32 ............................. GCCCAGATCGGCTTTTCATCCCGAAGCCGGGC 13573 29 100.0 32 ............................. GACACCCGCACGCGCCGGGCAGGCGTGGAACT 13634 29 100.0 32 ............................. TCGTCGGGTTTATTGAGTATTCCGCCTGATTT 13695 29 100.0 32 ............................. CAGGTCAGCGCAATGTTCCGGGATATCGAGGA 13756 29 100.0 32 ............................. ATGACAAAACCAAAATTGAGTTTTGGCTGCAG 13817 29 100.0 32 ............................. TTGTCCACTTCACGCCAGTAGTCTTTAGAGAT 13878 29 100.0 32 ............................. AATGGAGGTCCGGTTACTGCTGGAAATGTTTA 13939 29 100.0 33 ............................. ATCCCCACCACCGGCGCTGGCGAGTAGTACCGC 14001 29 100.0 32 ............................. GATTGTCTGACAGATAATGCAGCGCAATGCGC 14062 29 100.0 32 ............................. ATGTGAATTTCCTGGCCGGTTGGTAGTTTGAA 14123 29 100.0 32 ............................. TACTGAAACGGGTAATCAGCACAAATACCAAA 14184 29 100.0 32 ............................. CATCGCTTTATGCCGAAATGAGGATGATAGTG 14245 29 100.0 33 ............................. GAGCTTTCCTCCTCGTATCACTACCGCGCAGAC 14307 29 100.0 32 ............................. ATCAATTCCCTCATTTTTTTTCCTTTAGCTCG 14368 29 100.0 32 ............................. TTCATCTGGTAGCAAACCGCCATCGGGAAGAA 14429 29 100.0 32 ............................. ATTTTTTGGGGCACAATTTGGGGCATTTTTTT 14490 29 96.6 32 A............................ AGGGTTTCGATTTTATCGGGATAGAAATGAAT 14551 29 100.0 32 ............................. TGGCGGACGTTGTACCTGTGAGTTAATTCTTC 14612 29 100.0 32 ............................. ACCGCTCCTCTGACGCCAGGAGGGTGTAGGAG 14673 29 100.0 32 ............................. TCCAGGGGCAAAGAATTGCCCATTATCGTACA 14734 29 100.0 32 ............................. TTTGCAATATCTGCCTGCGCCGCCGCCAACGT 14795 29 100.0 32 ............................. CTCGGATAAAATGCCTTGCATGAGGCGAACGA 14856 29 100.0 32 ............................. GCGTCCAGTTGAACCCGGCACATTCCCGCTGG 14917 29 100.0 32 ............................. TACGCAGCCGGATCCAGGAGCGCATGGACGCT 14978 29 100.0 32 ............................. GCACGATATTCAGCATCATCAGGACGGTTCAT 15039 29 100.0 32 ............................. TCACGCCCAGGGCTTCCTTTGCGTTCCGAAAA 15100 29 96.6 32 ........T.................... CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 15161 29 96.6 32 .....A....................... TGCGTCACGACGCCGGCGACAGTGACATCGTC 15222 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 15280 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCGGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //