Array 1 39980-37011 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKJQ01000029.1 Acinetobacter bereziniae strain TUM15173 sequence029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 39979 28 100.0 32 ............................ AGTTGTTAAATATATTGCCATAAAATCACCCT 39919 28 100.0 32 ............................ TCTCTTTGATTACAAGCTCCCGTATGATTTTA 39859 28 100.0 32 ............................ TGATTGCTTCAATTTGTATGAGCTCATTTATT 39799 28 100.0 32 ............................ CATACAGCCGATAGTTTTAATGCTGTTTCTGG 39739 28 100.0 32 ............................ TGGTGAATTTGCTTCAGCTGTGACTTGGATTG 39679 28 100.0 32 ............................ TCAGATGTTAAAAAAGCAGAAGTTATATCAAC 39619 28 100.0 32 ............................ GATAGAATTATCGGGCGTTCGTTACACGGTTG 39559 28 100.0 32 ............................ ACTCACCTTTAATTCTTTCAACACAGCTTGAA 39499 28 100.0 33 ............................ CTTTGACATTTTTAAGCCTGTGATAATCACTGG 39438 28 100.0 32 ............................ TGATTCAATCAACTGCGAATAAACCATTTGAT 39378 28 100.0 32 ............................ TATTCGTGCTTTAGTCTTTGTTGTTGGTTTTG 39318 28 100.0 32 ............................ CATACCTCTCGCTAATTTATTTACGCCTGTAA 39258 28 100.0 32 ............................ TCTTCGCTTGCAACACCATTACTCCCTTGCGG 39198 28 100.0 32 ............................ AAAACGCAATTTGGGGGCTTCCTGCTGATGCG 39138 28 100.0 32 ............................ CACACCGAAAATATGTAGACCTTTACCGCTAC 39078 28 100.0 32 ............................ CGAGGAAAACGTAAGTATGACTAAATTACATA 39018 28 100.0 32 ............................ CCTAGAATCAGTAAAACCCTCGGCGCCGGTAC 38958 28 100.0 32 ............................ ATAACCCGGAATAAGATTCGCCGAAGCCGTAG 38898 28 100.0 32 ............................ CAAATGCACCAACCAATGAAAACCCCGAAACA 38838 28 100.0 32 ............................ ATTACCCGGGGCGCCTTGAATAAGTGGGCACC 38778 28 100.0 32 ............................ ACAAGCCAAGCGTTGAATTTAGAGGTTAAATC 38718 28 100.0 32 ............................ CTAAATTTTGGTAGTGGAAGCGTTAAGCCTGC 38658 28 100.0 32 ............................ AGAATTAGCACTGGTAAAAGTATCCAGAAGTA 38598 28 100.0 32 ............................ TGTCTTTTGATCAGGTTTAGAGTCAATCTTGA 38538 28 100.0 32 ............................ AATCAGTACCGTAAACGTTATGACCTTGGAGA 38478 28 100.0 32 ............................ TAACCATTAACCGCGACCGAACATGCCGACGA 38418 28 100.0 32 ............................ TAACCATTAACCGCGACCGAACATGCCGACGA 38358 28 100.0 32 ............................ AATATGTCTAAAGTATTGATCTTTATATTTTA 38298 28 100.0 32 ............................ TTGAAAGTAAAGGTCATGACCAAGTTAAAGCT 38238 28 100.0 32 ............................ TGTTGTTGGCTTGTCACAGTATGCTTCACCGT 38178 28 100.0 32 ............................ AATTAATGCAGTTAAGTTATTTCTCACTTTTT 38118 28 100.0 32 ............................ TCTCAAGAGGTGATTAAATTGCTCGATCAGAA 38058 28 100.0 32 ............................ AACTACCGCAAGGGTAGGGTCGTATTCAGCGC 37998 28 100.0 32 ............................ AAAATCCAGTCATTGAATGATTCTTTTTTAAT 37938 28 100.0 32 ............................ TTTGGGATTCGTTGTTAAATCTTATACTGTTG 37878 28 100.0 32 ............................ TATGGTAATCAAAATTATAAGCAGGCTTTGCC 37818 28 100.0 32 ............................ CGTTTCTAAAGTCTTAAATATGCGTATATTGC 37758 28 100.0 32 ............................ TCCGGGCGTTGGCAAAACTTTATTTGCAACTA 37698 28 100.0 32 ............................ TTGCTCTAATTCACGTTCAGAATAGTTTTGAA 37638 28 100.0 32 ............................ ATCCAACACCCTCAACTAAACCGTAAATTACA 37578 28 100.0 32 ............................ TTCCGCAGCGTTTGCAGATGTAGTACCAACTA 37518 28 100.0 32 ............................ TGCATTCTGTGAATGGGCAACTACAATGTGTG 37458 28 100.0 32 ............................ ACTATTATTAATTTCAATTAATTCAATTGCTT 37398 28 100.0 32 ............................ AATCGAAAATAATATTGTCGGTCTTGACTGGG 37338 28 100.0 32 ............................ TCTGAAGCAAGTACTTCAGCGTTTTGGCTGAT 37278 28 100.0 32 ............................ ATAAAATACATGGGTTGGATATCTTGCTTTCT 37218 28 100.0 32 ............................ CGAAGTATTTACACCTGAGTCGGTGACATTGA 37158 28 100.0 32 ............................ TAATTTTAGCAAGTGCTTATCTTCTTGGCGCT 37098 28 100.0 32 ............................ TCGAACAAGTCTGGCTGTATCAATTTCATTCG 37038 28 89.3 0 .........................CCT | ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.8 32 GTTCGTCATCGCATAGATGATTTAGAAA # Left flank : TCGTTGGGCGAAAACATTATATAAACAACTTGCTAAAGGCTTTGGAATCGAATTTATCCGCGATGAAGGAAAAAATTCTCACGATACTATTACAGATATAGCCAACAATTACCTAGATCATGGAAATTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGGATTAGCTTTGCTCTCCCTATTTTACATGGCAAAACACGCCGAGGAGGCTTAGTTTTTGATCTTGCGGATCTAGTCAAAGATGCTATCGTGATGCCTATAGCCTTTATATGCGCAAGCAAGGGTTTAAATCAAAAAGAATTTCGAATGCAACTCATCGAGACTTGCCAAGATCAAGATATTTTAGATTATATGTTTAGCTTCATTACTGAAATATGTAGTAAAATTAAATAAAATCAAAATCTTAAAAACAACTATTCTCTACGAAGTATTTTTACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATCTAGAAACAGTAAAAACATTGTAATGAAAATTAACTCATCACATCATCCAATACTTTTACCATTAAAATTCTCTTGTATTTATTTTTAAGAGTCAATTTAGACTCCACTCAAATATCAAACAAATCATAAAAAAATCCCCGCACAATGGCGGGGATTTTTTTATGATCTGAGATCAGAATGACTTACATCATTCCGCCCATACCACCCATTCCGCCCATATCAGGCATAGCAGGTTTATCTTCAGGAATATCTGTAATCATACATTCAGTTGTTAACATTAAACCAGCAACAGAAGCAGCATGTTCAAGTGCAGAACGTGTTACTTTTGCAGGATCAAGGATACCCATTTCTAACATGTCGCCATATTGTGAAGTCGCAGCATTGTAACCAAAGTTACCTTCGCCATTTTTCACAGCATTGATTACTACAGAAGGCTCATCGCCTGCATTAGAAACAATTTGACGAAGTGGTGCTTCAATCGCACGACGAAGGATATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16492-16284 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKJQ01000005.1 Acinetobacter bereziniae strain TUM15173 sequence005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16491 28 100.0 32 ............................ CTAATTCTAAAAAAAGCCTAAAGGAGAATCCC 16431 28 100.0 32 ............................ ATTCAGGCAATTGTTGATTGAAGTCGATCTCA 16371 28 100.0 32 ............................ TCATTGATGTTAAAGAGGGTTACAGTCCAACA 16311 28 85.7 0 ..C......T.C.........C...... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : TTCCAGAAACAGACTTGGAATCATACATAATTCAAAATTTTATTCTTATAAAAACAATAAGCACTATTTTTGATGAAATTTACGTTATAGCACAAGTTTTATTGAACTTTAACATCATATAAAAATAATCTTTTTTAGCAGTTTATTAAGTTGCAAAGGAAGTATGTATTATCGTTTGCAAGATAAATTAAATTTTAAATATTTGATTGATAAATAAATTATTTTATATGAGGTATGTCGTATGATTCTAAGGAGTGAATCTATTAGAGTTTGTATTATATACTGCTATAACTTGTTGCTGATGAGGCAAAAGGGAACAATTTAGGGAAATATGCTTTTAATAGAATTACGATTATTCAAATATTTTAACCCAATATTTTTTTACTCTTTAACAACTGAATAAAATCAATAAGTTATATTGGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTATCACTTTATTTTTTGATCTAAAATTATA # Right flank : AATTGTTAAACCTCTCTGATGATTGTAAAAATTTATAGTTGTATAAATTGTTTATTTTATAGCAATAAAAAAAGCCCACTCGAATGAAGTGGGCTTTTAGAATTTGGCTCTCCAACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCGACTGAGCTATTGGAGAATCTGCATGCGATTATAAGGATATATCACGAGTGGTCAAGCCTTTGATGTCATCTTTTCTTCATTTTTGACTTGTATGCTTTTTATTTAAACAAATAAGATCAAAATTAAAAAAATGGATTTGAGTGGTTGCAAAGCGAGAGCTGACTTGTTAGATTAAAAACATAAAGAGCGTTTAAGTTTGACTTAAACCGTGTGGATTTAACCAACTTGCCAGCACTAAAATGGCTAAATAGGAGACAGCGCGATGACGACGCTAACTATTTCTCAAATTTTTGAAAAATTTTCTTTTTATCAAGAAAACTACCTTTCTATCCTGCA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 104-433 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKJQ01000067.1 Acinetobacter bereziniae strain TUM15173 sequence067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 104 28 100.0 33 ............................ CTCGAAAAAATCCACGCGTTTGATGATGCTCAT 165 28 100.0 32 ............................ TTGAAATAAGTTCCTAACAGAAATTCTTACTT 225 28 100.0 32 ............................ ACGAATAGAAATAAATCAAAACAACACAAATC 285 28 96.4 32 .................C.......... ACTCTTGAGCCATTTGGATATTCAATCGTTTG 345 28 92.9 33 ................C.......A... AACTACGAGCTGATAAGTGGATAGACATATCAC 406 28 78.6 0 ...........T...AA.CC....A... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 94.6 33 GTTCACTACCGCATAGGTAGCTTAGAAA # Left flank : GAATAAAATCAATAAGTTATAATTGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTATTATTTTATTTTTTGTTTTAAAATTACAG # Right flank : ATATAAACGCCTTAACATCTTAGCTAAATTTATGAAAGTACAAACATATGGAATAATTTTTACAGTAAATAAAATATGATAATTTAAATGATAATTATTTGCATTATTAATTGCATTTGAATATTTGGTAAAATACAATGTGCAACAATTCTTACACAATCCCTCCGTAATTTAAGTTGCGTATTAACATGAATAAACAATTAACACTTCCAGCACTATCTCTCTCCATACTCTCAGCAATGTCAATTTCAACATATGCAAACGAGACTTCAGAAGACTCCTCCAAGCTTAAAACGATTGTCGTTACAGCAAGTAGTCAGGCGGTCGATGTTAAAGAGGCACCAGCTAGTATTAGTGTGATTACCAGTGAAGATATAGAAAAACAACCGGTGGGTAGTCTTGGCGAGTTATTAAGTAAAGTACCTGGGGTTACTGGTGGAATTAGTCCTACCAAAGAAGGATCTAAAATTAAACTACGCGGTTTACCTGACAATTACACA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGCATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //