Array 1 3006491-3004632 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024521.1 Escherichia coli strain E189 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3006490 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 3006429 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 3006368 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 3006307 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 3006246 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 3006185 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 3006124 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 3006063 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 3006002 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 3005941 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 3005880 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 3005819 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 3005758 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 3005697 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 3005636 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 3005575 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 3005514 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 3005453 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 3005392 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 3005331 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 3005270 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 3005209 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 3005148 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 3005087 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 3005026 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 3004965 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 3004904 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 3004843 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 3004782 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 3004721 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 3004660 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3033134-3032190 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024521.1 Escherichia coli strain E189 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3033133 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 3033072 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 3033011 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 3032950 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 3032889 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 3032828 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 3032767 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 3032706 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 3032645 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 3032584 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 3032523 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 3032462 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 3032401 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 3032340 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 3032279 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 3032218 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //