Array 1 20515-23786 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKGE01000019.1 Limosilactobacillus fermentum strain RI-508 p1551o2560-04_S4_contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 20515 29 96.6 32 ............................C AAACAGATCCGCCAGGAAAAAATTAAAAGTTG 20576 29 100.0 32 ............................. ATCGTCCGCGAAGTCGTCAAAGTCCGACGAAT 20637 29 100.0 32 ............................. GTTAAAGCGCAACTACCGCTTTTAGGAGGTGA 20698 29 96.6 32 ............................C GTGTTGGCCATCGTATCAACGTCAAGACGTTG 20759 29 100.0 33 ............................. AGAGTTAATCCAACTACTAAGACGGCGATAAGA 20821 29 96.6 32 ............................C AACGATAGTAAAACGATCTACCCATCGGCCGG 20882 29 96.6 32 ............................C TTGGGCCGCTGACGCTTTGCCTGGTCATAAAG 20943 29 96.6 32 ............................C TGCAAACTTAACCCAGATGACGCTGACGCCTG 21004 29 96.6 32 ............................C GGAATTGGTGATCCTAACCAAATTTGGCCGGG 21065 29 100.0 32 ............................. TACTACGCGTCAGAACTGGGCGTACTGCACTC 21126 29 96.6 32 ............................C ATTGTCAACCTCAGTCTGATCGGCTTTCAACG 21187 29 100.0 32 ............................. TGACCTGGTTTTTAACCGTCGTGATTGTGCTT 21248 29 96.6 33 ............................C AATCCCAAAATCCTCAAAGTGGTACATCCCTTG 21310 29 100.0 32 ............................. TCCTGCTTCGGGTTTTCCGCTTGTACCGTTCC 21371 29 100.0 32 ............................. AGCAACCCGATAACGCCATCGGCCATGACGTT 21432 29 96.6 32 ............................C TTTAGGAGATGGCGCAAAGGGAGTCCATCCAA 21493 29 96.6 32 ............................C AAGTGCTAACTCGTCACGATCGTTAGCTGACG 21554 29 96.6 37 ............................A GGTACCTAATAACTTCTTCATTCGATTTCATAGTGCT 21620 29 96.6 32 ............................G AACGACTACATCGACGATTACACGACCGAAAG 21681 29 100.0 32 ............................. AAAGGCGTAAAAAACAATCTCAAGTGGACACA 21742 29 100.0 32 ............................. GGCCGGTTTTATTTGTAGCTCGATTCGATAAA 21803 29 100.0 32 ............................. ATTTCCACGATCAAATGCGGAATCCAGGATTA 21864 29 100.0 32 ............................. TAAGTAACGTCGTACAAAGCAAAGTATCATCA 21925 29 100.0 32 ............................. GTTGCTGATGATTACGGCGAACGTCGAATGGC 21986 29 96.6 32 ............................C GAGTGCTCAAGATTAGGCAGCTAGACCAGGCT 22047 29 96.6 33 ............................C GAGTTAGCCTTAGCGGCGGCCGTGATCGCGTCA 22109 29 96.6 32 ............................C GAATCGGGCCTCTACTCGCTGATCTTATCTAG 22170 29 96.6 32 ............................C GCACGGTTGTTCGCCCGTTCGATTACCAAGTT 22231 29 100.0 32 ............................. GTAGGTTCCAGTTGGTGCCGTCCATTGATTGG 22292 29 96.6 32 ............................C CAAGTAGAACACGTTGGGCATCCGGCAACCGG 22353 29 100.0 32 ............................. AGCATCACTAAACCGACACACACTGTCTCGGC 22414 29 100.0 32 ............................. TAAACAACCGTCAAAACTACAACAACCAATAC 22475 29 96.6 32 ............................C GGCTAGCGACAAGAAGCAGAAATACAAAAGTG 22536 29 100.0 32 ............................. AAAGCCGGCCATTATGACCGGCGATACTAATC 22597 29 96.6 32 ............................C GTGCACAAGCAAAACTGATTAGGCAGCGTAAG 22658 29 96.6 34 ............................C GTGGAGACAGTAGAATTATGGCCGGGTGACCGGG 22721 29 93.1 32 ......T.....................C AAACGAAAACTTTACGGTCGAGGACTTTAAAA 22782 29 100.0 32 ............................. TAACAATCGAACGGCTTTTTGCCAAACATTCG 22843 29 96.6 32 ............................C TACCATCCTCGTGATTACCGGGACACGGTGCT 22904 29 100.0 32 ............................. TCAAGCCGACTAAAACAGAATCGTCTAATCGG 22965 29 96.6 32 ............................C TGATCATCGCCGCGCTTGAATCCATCTAATGG 23026 29 100.0 33 ............................. TGATGGGCATTACTACCGAGACCGAAGAGGTAA 23088 29 96.6 32 ............................C GGCCGTGTAGCCAGCGTCCTGGATCTTTTGCA 23149 29 100.0 32 ............................. CACGTTGGAGCCATCCAGAATCTGTAAGTAAG 23210 29 96.6 32 ............................C GAGAACGGCGGTCAATTGCCGAACAGCGGGTC 23271 29 100.0 32 ............................. GGCAAAAACAAGCCATTATGGACGACAAAGCA 23332 29 100.0 32 ............................. TTTAAGCATCCGTATAAATCTTTCGATGAGCA 23393 29 100.0 32 ............................. GCTGATATAAGCGGATTGATAATCGCCAACCG 23454 29 100.0 32 ............................. ATCGTTGATTTCCTTCATTTTTTGCCTCCATT 23515 29 96.6 32 ............................C AACAGGTTAAGCGAGCCCAAACGCACGTGACG 23576 29 100.0 32 ............................. CTCACCGTCGGGGCCAATGACGTTGATCCGCG 23637 29 89.7 31 .............G.......A......C GACATGTGGAAGCGGCTGATCGCCATCCCCG 23697 29 82.8 31 .......T....A.....A..A...G... GCTTGCCGGGATCCCTGTCTCCGTGTGCCTC 23757 29 79.3 0 ...T.......TC.A........A....C | T [23760] ========== ====== ====== ====== ============================= ===================================== ================== 54 29 97.4 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCTACTGACGAAATAATATCGATAGGGGCAGTCAAGTCAACCAATGGGGAAGAGATAGAACGATTTTATCGAATCATTCAACCAGACAAGGTAATTTCTCCAAAAATTACTGATCTCACAGGACTCAGCCAACAAAAAGTTGAGCAAGAAGGAATTAGCCTTGAAGCCGCACTGACGGACCTGAGGGATTTTATAGGACGATTCATTGTAGTTGGTTACAACGTTGCATTTGACTGGGGATTTATAGAACGAGGGTATGATAAAGTAGGACAAGATCGCTTGGGGAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTCGAAACGGTTCTAAAATACTACCAGATTGAAAATCAGGATCAACATAATTCACTAGCGGACGCCGATGCAACGATCAAGCTTATGACCAAACTGATTGAAAAAGGGTTTTTGAAAATTTGAAAACCGCTTGGTTACAGGGATCTTTTACT # Right flank : CTACGCACTTCAGTCGCCAGAGGGACTTTAAAGTGCTCATGGGTGATCGCTAAGAAGTTAGCTCGAGCGTATACAACGAAAAAACAGGCAATTAATTTTGTCAGCGACATTTTACGTCCCTCGGGTGCGATAGACTAACTTTAGAGGGTACGTCGGAGCGGTGCCTTTGCCAAAGCCAGGGTCAAAATAGTTAAACGCAGTTCTTTTTCCGTATCTAACCATAAAGAAACCTTTTTAAAGGGAGGATGGTTAGATGCGCAAGAAAGTGCAACAGATTGGCAATCAACAGCGGCATCGGTTTCGGGCGAAATTTTGCCGACTAGGGTACAAGGTGAGCTACGGCCACTTCAAGCCAACGCTTTTACTGACCGAGGTGGAACTTATTGATGATATGGAAAAACCGCAAGTGGTGACTTCACACTTATGGTTTAACTACACGACGGGGTTTCAGCGCCTGGGTCAGTTACAACCGGGTGACGTCATTTTGTTTAACGCCAGGG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //