Array 1 124662-128720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRP010000008.1 Streptococcus thermophilus strain Moz86 Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 124662 36 100.0 30 .................................... AAATCTATGGTACTGGTCAAAATAGGGAAA 124728 36 100.0 29 .................................... TAAATTGATTATTATATATACATAAAGTG 124793 36 100.0 30 .................................... CAACTTGAAAATTAGTAAAACATACTATAT 124859 36 100.0 30 .................................... GCTAAACAAAAAGCTGAAGCAGAACGCCTA 124925 36 100.0 30 .................................... TGCTACACCTAAAACCAATTCACTGCGAGA 124991 36 100.0 30 .................................... TGGGAAATTGGGAGAAGATTACAACACGTC 125057 36 100.0 30 .................................... CGTGTCGCTAAACAGACTAGCAAGACCTCT 125123 36 100.0 30 .................................... CCTATTATATACACATTTAAAACGACACTA 125189 36 100.0 30 .................................... CGTGTCGCTAAAGCTGCGAGTAAAACCTCT 125255 36 100.0 30 .................................... GAATCCACTTTGTTCTTTATAGTAGTTAGT 125321 36 100.0 30 .................................... CGTGCTGTCAGTCAATAAGACATGGGACTA 125387 36 100.0 30 .................................... TGAAAGTCTCACTAGTCCATTAGTGCGGTT 125453 36 100.0 30 .................................... TATTTATTACAAATAACAACCATATTCTTA 125519 36 100.0 30 .................................... ATTTGACCGTTTATTTAGACGTGCTAAAGT 125585 36 100.0 30 .................................... AGAAATTCATGGCTGAAAAACTTTGGCATA 125651 36 100.0 30 .................................... ATATATGTATTTAAGTACACAAAAGACCCT 125717 36 100.0 30 .................................... GATGAAACACGCATTAAGCGATTAAGTCCG 125783 36 100.0 29 .................................... CGACACAAGAACGTATGCAAGAGTTCAAG 125848 36 100.0 30 .................................... ACAATTCTTCATCCGGTAACTGCTCAAGTG 125914 36 100.0 30 .................................... TACCATCTTAGGATAGGTACTGGTCATGCC 125980 36 100.0 31 .................................... CGTGTCGCTAAACAGACTAGCAAGACCTCAG 126047 36 100.0 30 .................................... AGAAGTCACTCGTGAGAAACACTACTCAAA 126113 36 100.0 30 .................................... CTTTTTTGGCAATCCAACCTGAGAGCCAAG 126179 36 100.0 30 .................................... TGCAAACAAAACAGTGCGATCGCTTGCAAG 126245 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 126311 36 100.0 30 .................................... CGGACGAAGCAGCTAGGCTACTGCGCTTCG 126377 36 100.0 30 .................................... CGTGCTGTCAGTCAATAAGACATGGGACTA 126443 36 100.0 30 .................................... TGAAAGTCTCACTAGTCCATTAGTGCGGTT 126509 36 100.0 30 .................................... TATTTATTACAAATAACAACCATATTCTTA 126575 36 100.0 30 .................................... ATTTGACCGTTTATTTAGACGTGCTAAAGT 126641 36 100.0 30 .................................... AGAAATTCATGGCTGAAAAACTTTGGCATA 126707 36 100.0 30 .................................... ATATATGTATTTAAGTACACAAAAGACCCT 126773 36 100.0 30 .................................... GATGAAACACGCATTAAGCGATTAAGTCCG 126839 36 100.0 29 .................................... CGACACAAGAACGTATGCAAGAGTTCAAG 126904 36 100.0 30 .................................... ACAATTCTTCATCCGGTAACTGCTCAAGTG 126970 36 100.0 30 .................................... TACCATCTTAGGATAGGTACTGGTCATGCC 127036 36 100.0 31 .................................... CGTGTCGCTAAACAGACTAGCAAGACCTCAG 127103 36 100.0 30 .................................... AGAAGTCACTCGTGAGAAACACTACTCAAA 127169 36 100.0 30 .................................... CTTTTTTGGCAATCCAACCTGAGAGCCAAG 127235 36 100.0 30 .................................... TGCAAACAAAACAGTGCGATCGCTTGCAAG 127301 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 127367 36 100.0 30 .................................... TGCATCGAGCACGTTCGAGTTTACCGTTTC 127433 36 100.0 30 .................................... TCTATATCGAGGTCAACTAACAATTATGCT 127499 36 100.0 30 .................................... AATCGTTCAAATTCTGTTTTAGGTACATTT 127565 36 100.0 30 .................................... AATCAATACGACAAGAGTTAAAATGGTCTT 127631 36 100.0 30 .................................... GCTTAGCTGTCCAATCCACGAACGTGGATG 127697 36 100.0 30 .................................... GAGCGCCCTCTATTACTTAACATAAACGGT 127763 36 100.0 30 .................................... CAGATAGCTGTTAAGTCGCCTGGCTGATAA 127829 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 127895 36 100.0 30 .................................... AAATCTCGTAGTTAGTACAGTAGGTTTCAA 127961 36 100.0 30 .................................... ATAACTGAAGGATAGGAGCTTGTAAAGTCT 128027 36 100.0 30 .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 128093 36 100.0 30 .................................... GAAAAAGCATCCATGATAGTGCTTAGACCT 128159 36 100.0 30 .................................... TGGAAACTAAGAAATGCAATAGAGTGGAAG 128225 36 100.0 30 .................................... AAATCTCGTAGTTAGTACAGTAGGTTTCAA 128291 36 100.0 29 .................................... TCATAGCGGATTCGAACCGCTATAAGCCC 128356 36 100.0 29 .................................... CATGATTTACAACCACGCGCTAGACCAAG 128421 36 100.0 30 .................................... AAGTAGTTGATGACCTCTACAATGGTTTAT 128487 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 128553 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 128619 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 128685 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 62 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 75463-75715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRP010000014.1 Streptococcus thermophilus strain Moz86 Contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 75463 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 75535 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 75611 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 75686 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGACTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : CTTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 56241-54885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRP010000018.1 Streptococcus thermophilus strain Moz86 Contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 56240 36 100.0 30 .................................... CGCTTCATCAGGAGTTATGCCGCTTTACTT 56174 36 100.0 30 .................................... CTATGGGAGTTTCAAAGATTATCAAAGCAC 56108 36 100.0 30 .................................... AAAACCAAGTCGAGGCTGGTGGCTTGGTAA 56042 36 100.0 30 .................................... GTTCGTCTTTAAGAGCTTGAAAGGCTGCTA 55976 36 100.0 30 .................................... CTATTTGCAGACAAAGAATTCAGTAAATCA 55910 36 100.0 30 .................................... CGATGGAAATGATGGATTGCCTGGCAAAGA 55844 36 100.0 30 .................................... AATATGTTCAAGGTGCTAGAACCGAAAACA 55778 36 100.0 30 .................................... AGACGTCCATTTTGCTATCTAGTTCAGGTA 55712 36 100.0 30 .................................... AACGGTTAAATGGCATCTAACATTTAACTC 55646 36 100.0 30 .................................... ATTAGATGCTATTATCACCGATGTTAAAAT 55580 36 100.0 30 .................................... AGTTAAAGCTGATGCAGGTGTATTGACTGG 55514 36 100.0 30 .................................... ACCAGTCCACAATATATTAATTGAATTTGA 55448 36 100.0 30 .................................... AACGGTTAATTTCGATATTCCAAAGAGTTA 55382 36 100.0 30 .................................... TCTGCCGCCCCGGGAAACCCAAGTGGTCAG 55316 36 100.0 30 .................................... CAAACCATAACACTGACGACAATTCCAAGA 55250 36 100.0 30 .................................... TAGAGGTAATGACGGACTACCAGGTAAGGA 55184 36 100.0 30 .................................... AGTTGTGACTTCGCTTTCGCTTGGCATCCG 55118 36 100.0 30 .................................... TTTCCAATGCCGTGATGGTTTTCGTCAGGA 55052 36 100.0 30 .................................... CAAGGTATACGGCATCCCTGATAACGTAGT 54986 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 54920 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //