Array 1 57-269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOSH01000126.1 Escherichia coli 1-392-07_S4_C3 e139207S4C3.contig.125_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 119 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 180 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 241 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCGCCAGCGGGGATAAACCGACCTGGAGGCGAAAAAGGCGCTTCGACGTAAAG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63386-62380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOSH01000238.1 Escherichia coli 1-392-07_S4_C3 e139207S4C3.contig.238_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63385 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 63324 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 63263 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 63202 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 63141 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 63080 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 63019 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 62958 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 62896 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 62835 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 62774 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 62713 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 62652 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 62591 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 62530 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 62469 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 62408 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80807-78887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOSH01000238.1 Escherichia coli 1-392-07_S4_C3 e139207S4C3.contig.238_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80806 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 80745 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 80684 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 80623 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 80562 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 80501 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 80440 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 80379 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 80318 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 80257 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 80196 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 80135 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 80074 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 80013 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 79952 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 79891 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 79830 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 79769 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 79708 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 79647 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 79586 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 79525 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 79464 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 79403 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 79342 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 79281 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 79220 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 79159 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 79098 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 79037 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 78976 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 78915 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //