Array 1 34603-31181 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRZK01000007.1 Bacteroides thetaiotaomicron strain AF14-20 AF14-20.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 34602 45 87.2 30 ...A.-...CA....T..-............................ CTTGCCGAAGTCGGAGATACCGTCCAAGCA A [34593] 34526 47 97.9 30 .........................G..................... TATAAAATTCAGCGTGCCAAACAGCACGAT 34449 47 100.0 31 ............................................... CGCACGTACAATATATTATCAAGTATATGGA 34371 47 100.0 30 ............................................... GGTAACGCCATCGGAGTTCATTGCGATTAA 34294 47 100.0 30 ............................................... AAGGTTTGAGGTTGACAATTTTTCCATTAA 34217 47 100.0 30 ............................................... CGTTGTAAGTACCATCGTCTACCCGTAACA 34140 47 100.0 29 ............................................... GCGCAAATCAGGTCGTTCATCTGTAGCCT 34064 47 100.0 30 ............................................... TGACTCATTACAGGCTATCAAGAATGCACC 33987 47 100.0 29 ............................................... CTTCTCAAAAACGACTGTAACCGAGCAAG 33911 47 100.0 30 ............................................... AACTACGGCTTGGGCGCTACTGCTATTTCG 33834 47 100.0 30 ............................................... TTTGGCGGCGGTGGATTTGTCGCGAATTGT 33757 47 100.0 29 ............................................... CTTCGTCCAGCAGCATGTTCTGGAAGTCA 33681 47 100.0 30 ............................................... AACCGCGTCCGTGTATTCTTCGAAGTCGGC 33604 47 100.0 29 ............................................... CTTTTATATTAAAACATTGCATCCAGTCT 33528 47 100.0 30 ............................................... AATGCGTAAAAAATTCAAATACTAATCTAC 33451 47 100.0 30 ............................................... CAAAGAGCGCATTTATTACAAGGGACAATC 33374 47 100.0 30 ............................................... TAGACCTATTTGATAAAACAACCTTTCAGC 33297 47 100.0 29 ............................................... AAATCTATACAAGCCGTGTACCCGCCCGT 33221 47 100.0 29 ............................................... CATTTTTACGGGAAGCAAGTATAAATGTA 33145 47 100.0 29 ............................................... GCATCTACTCCTAGCGTGTCCCAGTATGT 33069 47 100.0 30 ............................................... AACCGCGTCCGTGTATTCTTCGAAGTCGGC 32992 47 100.0 29 ............................................... GTGCTTGCAGGATCAACCACTCCACGCCA 32916 47 100.0 30 ............................................... GGTCTCTAGCAGAGGCGGTACGCGTTCCTC 32839 47 100.0 30 ............................................... CTGTCCAGTTTTGGCACGAAATGTAGTCCA 32762 47 100.0 30 ............................................... CACGGCTTAACTTGCTACGCAACTTAGTCA 32685 47 100.0 30 ............................................... CTACCCGAATGCGAGGAAATGCCCGTTCCG 32608 47 100.0 29 ............................................... GAGACCACGCGGGAATACGACCTACTGGC 32532 47 100.0 30 ............................................... CGTTCTTCAATTCGGCATTGCCGCCGATGG 32455 47 100.0 30 ............................................... CAGAAGGACAGCTACCTACAATACCTAATT 32378 47 100.0 30 ............................................... AACATTATTCCCGCAGAAGTTGCCGCAGCA 32301 47 100.0 30 ............................................... CCTTTTTAATAAGGTAGAGCGACAGAAGGT 32224 47 100.0 29 ............................................... GTTCAATAAAAAGTATTGCGGATGCCATA 32148 47 100.0 30 ............................................... AAAAAGAGGAGGTATAATCATGGCAGTTGT 32071 47 100.0 30 ............................................... TGAACCAAATCCAACTAGAGACAACTAGTC 31994 47 100.0 30 ............................................... TAATACAATCGAAGACCTGACCACATATAT 31917 47 100.0 30 ............................................... TTATCTGTATTTAAAGACAAAACAGCACGA 31840 47 100.0 30 ............................................... ACTACAACTGAAGCAGATAGAGGCGCAAAA 31763 47 100.0 29 ............................................... TAGATTCTATAAGCAAGTTCAAGCAAGCA 31687 47 100.0 30 ............................................... TGTCATACCTCCGATAAACACAGGTGTTTC 31610 47 100.0 30 ............................................... GGAGGAGGACAAGCGGCAAGTACAGCAGGA 31533 47 100.0 29 ............................................... AAAGAGGAGAAATAAATTATGACAGTCGT 31457 47 100.0 30 ............................................... TATGTAGAAGTAGAATGCGGACACTGCTTC 31380 47 100.0 29 ............................................... GCTCAAAAAGTAATCGACGCGACGGATTG 31304 47 100.0 30 ............................................... AACTTCATAACACGTTCATCATTTGGAAAT 31227 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 45 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : GTTCACAAGTTACATAGGTGGGGATTCCATAGTTGGCGATCTCCTGCATAGCAGCCGCACGTTCTTGAGGTACCAGAGTATTCCGCATTATATCCGGATAAAAACGGTTCGTCTCAATGGTCGTACAAAGAACGGATTTCTTCATAACCGGATGCTCCAGATATTTCAGAAAACGGGCGGGATTCTTTGACTGGAAGAGATACTTGTTATCAAAACCGTCACAATAGTCCAGTATCTGCTCAATCCATTCTGACGGGACATTAGCCGCCCATTCATCCGTACTGCTGCCTACAAAGATAAAGTTGCCTTCACCCAGATTCACTTTCAGTTCCTTCAGCTCCAGACGCAAGGGAGGCAGGAGAAGTTTACGTCTCATAAAACAATATGAACAAGAGTGTTCACATTCGCCTTTCATCGGGTTATATGTATGTGAAACGAAGGCATACATGTTCCCGGTACTTTTATTCAGTGCCATATATCATTATGCTTTTCACATCCAT # Right flank : ATATTTTATATAACAAAATGATTTCCAACAAGTTAAAAAGAAAATTAGAAAAGAAAAAAAGTCTGTTTCCAGCACAAAATCTCGCATTAATGCGAGATTTTGTTTTTTAAAATAACTCTAATTGTTGTCCAGGCGTATTAACATTCTGCATTTTCTTTCCATAAAAAAGTTCTATATTACCAAACTGTTTATCGGTAATACACATGATTCCGACATGTCCAAACTCCGGGAGGAAAGATTTAACTCTTTTTATATGTACTGTAGCATTTTCACTACTAGCACAGTGACGCACATAAATGGAAAATTGAAACATAGTAAAACCATCCTTTTGCAGATTCTTTCTAAAGTCCGCATAAGCCTTCTTTTCTTTCTTCGTCTCAGTCGGCAAATCAAAAAAAACAAGTACCCACATAATACGATATTCACTAAAGCGATCCATTATCGTTCAGGATAAGCTATTCGACGAATTTCTCCATTGAAACATTTGTAAAGTGAGGAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 141439-142177 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRZK01000005.1 Bacteroides thetaiotaomicron strain AF14-20 AF14-20.Scaf5, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 141439 47 100.0 29 ............................................... GGCTAGCAATGTAGGTTCTCCATCTACTG 141515 47 100.0 29 ............................................... GTAGGTGCTCACGATCTCGACCATTCCCG 141591 47 100.0 30 ............................................... CCAACCATCTGTTCTTGAATCAAATCTTGG 141668 47 100.0 30 ............................................... CATGTTCTCTGCGTAGTACGGGAAATAGAT 141745 47 100.0 30 ............................................... CATTCCGCGACTTTCTTTTCGGCTTCAGCA 141822 47 100.0 30 ............................................... ATTCCGGCACAGTCGTTTCGGATGTTCTCA 141899 47 100.0 30 ............................................... CGATAAGGCGAATGCTATTTTCACGTCAAC 141976 47 100.0 29 ............................................... TAGTCCGGCGTTTACTGTAGTGGTTCCGC 142052 47 100.0 29 ............................................... TCTGATATCTTCATTATTTTGATTTTATA 142128 47 85.1 0 .........G...A......A........A.....A.....T.T... | C,A,G [142168,142170,142173] ========== ====== ====== ====== =============================================== ============================== ================== 10 47 98.5 30 GTTGTGTCCAATGGTTCAAAGATACTAAATTGAAAGCAAATCACAAC # Left flank : GGCATCGCTTTATAAATGTTTCAGTGGGGAAGTTCGTCGAATTTCGTATCCTGAACGGTAATGGATCGATTTAGTGAATATCGAGTCATGTGGGTGCTTGTTCTTTTTGATTTGCCGACTGAAACAAAGAAAGATAAGAAGGCTTATGCGGATTTCAGAAAGAATTTGCAAAAGGATGGTTTTACGATGTTTCAGTTTTCTATTTACGTGCGTCATTGCGCTAGTAGTGAGAATGCAATGGTGCATATAAAAAGAGTTAAATCTTTTCTCCCTGAATTTGGGCAGATTGGAATTATGTGTATTACGGATAAACAATTTGGGGACATAGAGCTTTTTTATGGGAAGAAAATCCAAAATGTGAATTCACCAGGACAGCAATTAGAACTGTTTTAAAATAAAAATCCCGCATTGACGCGGGATTTTTTGATGGAAACAACTCTCTTTTTTCTTTTCTGAACTTCTTTGTAAATTGTTGATTCACAATGTGTAAGTGATAATTA # Right flank : CAAATTTTAGTTATATTTCTCTGCCTGTTATTTCTGCTGCCTCAAGTATTGTAGTTTGTTCATATGATGTTAAATTGCTAATGATGTGAGATTATACTTTGTCTATTACCCTTTCTTTATCTTTATCCAAGTCCATCGATGCCAAATGGTTTCCAATGGTCCTTGTTTATGCTTCGACAGCCACCATTTACAGAACTGTACCTGTAATAGGAACAGAATGATTCCGATAATCAGACTGAGCGTATATCCGCAATAGGGAGCCAGATAAAATCCGAATGGGAAGTAGATGATAGCTCCCATAATAGATTGTGTGATGTAGTTAGTCAGACTCATTTTTCCGTAAAAGCGCAGGTTGGAAACGGTTTTCTGGAACTTAGCCTTCTGATAAAGTAAGATGAAGGAAGCAATCAGTACGATAGTAAATGCGAATTTCTGCCACATATCAAAAGCTGTCCCTACGGTCTGTTGAATCAGGCTGCTGTCACTTTGCATGATCTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTCCAATGGTTCAAAGATACTAAATTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [4.5,4.5 Confidence: NA] # Array family : II-C [Matched known repeat from this family], //